Wall clock time and date at job start Tue Mar 31 2020 01:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47489 * 2 1 4 4 C 1.50704 * 109.46759 * 240.00384 * 2 1 3 5 5 O 1.21277 * 120.00246 * 275.70128 * 4 2 1 6 6 N 1.34779 * 119.99738 * 95.70115 * 4 2 1 7 7 C 1.46501 * 120.00135 * 4.48554 * 6 4 2 8 8 C 1.50703 * 109.46442 * 274.58497 * 7 6 4 9 9 H 1.07997 * 120.00675 * 0.02562 * 8 7 6 10 10 C 1.37882 * 119.99490 * 179.97438 * 8 7 6 11 11 N 1.31514 * 120.00422 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 119.99656 * 180.02562 * 10 8 7 13 13 H 1.48493 * 109.47196 * 90.00137 * 12 10 8 14 14 H 1.48504 * 109.46981 * 210.00273 * 12 10 8 15 15 H 1.48498 * 109.47233 * 329.99923 * 12 10 8 16 16 C 1.46504 * 119.99852 * 184.47707 * 6 4 2 17 17 C 1.52995 * 109.46877 * 84.63756 * 16 6 4 18 18 C 1.52997 * 117.50226 * 116.25147 * 17 16 6 19 19 C 1.53002 * 117.49630 * 184.91484 * 17 16 6 20 20 C 1.52996 * 109.47087 * 120.00737 * 2 1 3 21 21 F 1.39905 * 109.46845 * 179.97438 * 20 2 1 22 22 F 1.39892 * 109.47145 * 299.99352 * 20 2 1 23 23 F 1.39902 * 109.47314 * 59.99997 * 20 2 1 24 24 H 1.09001 * 109.47151 * 66.62338 * 1 2 3 25 25 H 1.08992 * 109.47595 * 186.62966 * 1 2 3 26 26 H 1.09002 * 109.47013 * 306.62754 * 1 2 3 27 27 H 1.08992 * 109.47282 * 34.58273 * 7 6 4 28 28 H 1.09004 * 109.47198 * 154.59068 * 7 6 4 29 29 H 0.96999 * 120.00118 * 179.97438 * 11 10 8 30 30 H 1.09001 * 109.47295 * 324.63515 * 16 6 4 31 31 H 1.09003 * 109.46785 * 204.63544 * 16 6 4 32 32 H 1.09002 * 115.55034 * 330.57903 * 17 16 6 33 33 H 1.08998 * 117.50292 * 214.99591 * 18 17 16 34 34 H 1.09004 * 117.49690 * 0.02562 * 18 17 16 35 35 H 1.08993 * 117.49948 * 359.97073 * 19 17 16 36 36 H 1.08998 * 117.49990 * 144.99613 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 2.1360 -1.9187 -1.2334 6 7 2.3661 -0.0028 -2.3280 7 6 2.3349 1.4615 -2.2930 8 6 0.9388 1.9414 -2.5960 9 1 0.1533 1.2272 -2.7943 10 6 0.6640 3.2923 -2.6190 11 7 1.6203 4.1621 -2.3770 12 14 -1.0667 3.8872 -2.9938 13 1 -1.8345 4.0051 -1.7283 14 1 -1.0012 5.2135 -3.6585 15 1 -1.7402 2.9158 -3.8927 16 6 2.7605 -0.6979 -3.5558 17 6 1.5099 -1.0777 -4.3510 18 6 1.3269 -0.4375 -5.7285 19 6 1.7045 -1.9167 -5.6156 20 6 2.0400 -0.7214 1.2491 21 9 3.4390 -0.7219 1.2488 22 9 1.5738 -0.0620 2.3914 23 9 1.5736 -2.0404 1.2490 24 1 -0.3633 0.4078 -0.9433 25 1 -0.3634 -1.0207 0.1186 26 1 -0.3633 0.6131 0.8247 27 1 2.6312 1.8077 -1.3030 28 1 3.0249 1.8576 -3.0382 29 1 1.4270 5.1125 -2.3936 30 1 3.3164 -1.6000 -3.3001 31 1 3.3892 -0.0423 -4.1585 32 1 0.6137 -1.2612 -3.7583 33 1 0.3105 -0.1998 -6.0421 34 1 2.0979 0.2540 -6.0684 35 1 2.7236 -2.1976 -5.8813 36 1 0.9364 -2.6521 -5.8549 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361821757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:52 Heat of formation + Delta-G solvation = -184.850749 kcal Electronic energy + Delta-G solvation = -23405.334875 eV Core-core repulsion = 19474.699490 eV Total energy + Delta-G solvation = -3930.635385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -51.13833 -48.65662 -48.55243 -41.09054 -38.29863 -36.51033 -34.75464 -34.41487 -29.70334 -28.09196 -27.33326 -25.08518 -23.95063 -23.15613 -21.80607 -20.39560 -19.61866 -19.38744 -18.56786 -18.31441 -17.89612 -17.10235 -16.45997 -16.01399 -15.82494 -15.50760 -15.36451 -15.03714 -14.88326 -14.78404 -14.71718 -14.43448 -14.31944 -14.08951 -13.64887 -13.47500 -13.23830 -13.07563 -12.81233 -12.67237 -12.53270 -12.30790 -12.17577 -12.04246 -11.59956 -11.29858 -10.85921 -10.74177 -10.49486 -9.55073 -8.15847 -6.27300 1.36662 1.44453 1.48876 1.55203 1.68996 2.14503 2.44256 2.72370 3.00190 3.03823 3.09368 3.16749 3.61439 3.87257 3.98180 4.05694 4.08774 4.16567 4.39975 4.66852 4.71570 4.74063 4.75415 4.82867 4.92681 5.07634 5.15639 5.21076 5.30392 5.31100 5.68563 5.81149 6.07965 6.44058 6.82593 7.12709 7.43665 8.90538 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.013002 B = 0.008397 C = 0.005898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2153.072422 B = 3333.779978 C = 4746.062809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.155 4.155 3 H 0.139 0.861 4 C 0.523 3.477 5 O -0.573 6.573 6 N -0.585 5.585 7 C 0.246 3.754 8 C -0.525 4.525 9 H 0.061 0.939 10 C 0.028 3.972 11 N -0.920 5.920 12 Si 0.945 3.055 13 H -0.272 1.272 14 H -0.289 1.289 15 H -0.271 1.271 16 C 0.151 3.849 17 C -0.171 4.171 18 C -0.170 4.170 19 C -0.160 4.160 20 C 0.470 3.530 21 F -0.189 7.189 22 F -0.175 7.175 23 F -0.175 7.175 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.093 0.907 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.266 0.734 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.108 0.892 36 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.589 -6.640 0.458 6.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.177 4.177 3 H 0.157 0.843 4 C 0.309 3.691 5 O -0.454 6.454 6 N -0.314 5.314 7 C 0.125 3.875 8 C -0.564 4.564 9 H 0.079 0.921 10 C -0.173 4.173 11 N -0.560 5.560 12 Si 0.771 3.229 13 H -0.198 1.198 14 H -0.215 1.215 15 H -0.196 1.196 16 C 0.029 3.971 17 C -0.190 4.190 18 C -0.207 4.207 19 C -0.197 4.197 20 C 0.416 3.584 21 F -0.171 7.171 22 F -0.156 7.156 23 F -0.156 7.156 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.112 0.888 27 H 0.046 0.954 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.105 0.895 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.460 -7.066 0.470 7.096 hybrid contribution -0.695 0.734 0.057 1.013 sum -1.155 -6.332 0.527 6.458 Atomic orbital electron populations 1.21722 0.88045 1.03685 1.05804 1.22603 1.02714 1.02807 0.89558 0.84336 1.19884 0.77450 0.86763 0.84955 1.90674 1.55938 1.14525 1.84290 1.48135 1.63750 1.08845 1.10671 1.19295 0.97258 0.73456 0.97457 1.21523 0.95134 0.91609 1.48116 0.92062 1.25507 0.99993 0.96881 0.94914 1.69997 1.33787 1.02392 1.49799 0.85747 0.81029 0.77507 0.78605 1.19792 1.21502 1.19554 1.21032 0.94919 0.96857 0.84330 1.22453 0.99369 1.06486 0.90711 1.22980 1.02697 0.96003 0.99021 1.23043 1.03551 0.93695 0.99411 1.20061 0.75137 0.77807 0.85433 1.93159 1.30584 1.96479 1.96838 1.93171 1.88393 1.80715 1.53315 1.93188 1.88246 1.37475 1.96714 0.89689 0.91150 0.88842 0.95382 0.95345 0.92514 0.90661 0.89521 0.90341 0.89276 0.88560 0.87366 0.88013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.34 8.94 71.98 0.64 -3.69 16 2 C -0.15 -5.52 2.14 -11.54 -0.02 -5.55 16 3 H 0.14 5.10 5.71 -2.39 -0.01 5.09 16 4 C 0.52 20.84 6.32 87.66 0.55 21.39 16 5 O -0.57 -24.92 15.02 -3.02 -0.05 -24.96 16 6 N -0.59 -23.11 2.48 -826.14 -2.05 -25.15 16 7 C 0.25 10.76 4.89 85.63 0.42 11.18 16 8 C -0.53 -24.41 8.27 25.60 0.21 -24.20 16 9 H 0.06 2.87 6.99 -2.91 -0.02 2.85 16 10 C 0.03 1.33 5.46 84.66 0.46 1.79 16 11 N -0.92 -47.63 13.29 21.45 0.28 -47.35 16 12 Si 0.94 39.13 29.54 68.60 2.03 41.15 16 13 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 14 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 15 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 16 C 0.15 5.22 5.72 86.38 0.49 5.72 16 17 C -0.17 -5.59 5.97 -10.80 -0.06 -5.65 16 18 C -0.17 -4.90 10.18 30.62 0.31 -4.59 16 19 C -0.16 -4.02 10.26 30.62 0.31 -3.71 16 20 C 0.47 16.12 2.58 71.98 0.19 16.30 16 21 F -0.19 -6.77 17.02 44.97 0.77 -6.00 16 22 F -0.17 -5.44 16.92 44.97 0.76 -4.68 16 23 F -0.17 -6.28 15.28 44.97 0.69 -5.59 16 24 H 0.08 2.98 6.30 -2.39 -0.02 2.96 16 25 H 0.07 2.15 7.62 -2.39 -0.02 2.13 16 26 H 0.09 2.59 7.99 -2.39 -0.02 2.57 16 27 H 0.03 1.29 6.11 -2.39 -0.01 1.27 16 28 H 0.03 1.32 7.80 -2.38 -0.02 1.31 16 29 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 30 H 0.08 2.57 7.53 -2.39 -0.02 2.56 16 31 H 0.09 2.78 7.53 -2.39 -0.02 2.76 16 32 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.09 2.55 8.14 -2.39 -0.02 2.53 16 34 H 0.10 2.71 8.03 -2.39 -0.02 2.69 16 35 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 36 H 0.10 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -53.92 314.08 7.04 -46.88 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 1.10 Total: 16.71 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: 3.51 Total: 9.00 kcal Atomic # 7 Polarization: -70.74 SS G_CDS: -1.76 Total: -72.50 kcal Atomic # 8 Polarization: -24.92 SS G_CDS: -0.05 Total: -24.96 kcal Atomic # 9 Polarization: -18.49 SS G_CDS: 2.21 Total: -16.27 kcal Atomic # 14 Polarization: 39.13 SS G_CDS: 2.03 Total: 41.15 kcal Total: -53.92 7.04 -46.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361821757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.971 kcal (2) G-P(sol) polarization free energy of solvation -53.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds