Wall clock time and date at job start Tue Mar 31 2020 01:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46797 * 2 1 4 4 C 1.50702 * 109.46736 * 119.99518 * 2 1 3 5 5 O 1.21281 * 120.00076 * 88.70355 * 4 2 1 6 6 N 1.34775 * 119.99980 * 268.42327 * 4 2 1 7 7 C 1.46503 * 120.00082 * 355.01305 * 6 4 2 8 8 C 1.50698 * 109.46978 * 91.68353 * 7 6 4 9 9 H 1.08001 * 119.99936 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00041 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00209 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00088 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47236 * 89.99941 * 12 10 8 14 14 H 1.48500 * 109.47232 * 210.00644 * 12 10 8 15 15 H 1.48504 * 109.46988 * 330.00119 * 12 10 8 16 16 C 1.46499 * 120.00246 * 175.01881 * 6 4 2 17 17 C 1.52997 * 109.47417 * 94.12105 * 16 6 4 18 18 C 1.52999 * 117.50082 * 244.71284 * 17 16 6 19 19 C 1.53008 * 117.49891 * 176.05051 * 17 16 6 20 20 C 1.52999 * 109.47160 * 239.99425 * 2 1 3 21 21 F 1.39892 * 109.47435 * 299.99639 * 20 2 1 22 22 F 1.39895 * 109.47035 * 60.00406 * 20 2 1 23 23 F 1.39902 * 109.46774 * 179.97438 * 20 2 1 24 24 H 1.08994 * 109.47234 * 304.84618 * 1 2 3 25 25 H 1.09002 * 109.46860 * 64.85081 * 1 2 3 26 26 H 1.09009 * 109.46738 * 184.84729 * 1 2 3 27 27 H 1.08997 * 109.47453 * 211.68045 * 7 6 4 28 28 H 1.08998 * 109.47244 * 331.68375 * 7 6 4 29 29 H 0.96996 * 120.00210 * 179.97438 * 11 10 8 30 30 H 1.09000 * 109.47486 * 214.12701 * 16 6 4 31 31 H 1.09002 * 109.47029 * 334.12291 * 16 6 4 32 32 H 1.08993 * 115.55138 * 30.38232 * 17 16 6 33 33 H 1.09004 * 117.49713 * 359.97438 * 18 17 16 34 34 H 1.08995 * 117.49985 * 145.02038 * 18 17 16 35 35 H 1.08998 * 117.49986 * 214.98104 * 19 17 16 36 36 H 1.08997 * 117.49481 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.2120 -1.9095 1.2076 6 7 2.2872 -0.0121 2.3548 7 6 2.1812 1.4491 2.3496 8 6 0.7883 1.8532 2.7588 9 1 0.0554 1.0972 2.9992 10 6 0.4498 3.1880 2.8273 11 7 1.3424 4.1086 2.5350 12 14 -1.2770 3.6889 3.3339 13 1 -1.3318 3.8550 4.8085 14 1 -1.6327 4.9726 2.6775 15 1 -2.2395 2.6371 2.9181 16 6 2.6702 -0.7143 3.5822 17 6 4.1959 -0.7688 3.6836 18 6 4.8592 -2.1462 3.6221 19 6 4.7983 -1.3841 4.9484 20 6 2.0401 -0.7214 -1.2492 21 9 1.5739 -2.0403 -1.2491 22 9 1.5738 -0.0619 -2.3914 23 9 3.4391 -0.7208 -1.2494 24 1 -0.3633 0.5871 0.8433 25 1 -0.3633 0.4367 -0.9303 26 1 -0.3633 -1.0241 0.0868 27 1 2.9020 1.8682 3.0515 28 1 2.3890 1.8248 1.3477 29 1 1.1042 5.0476 2.5829 30 1 2.2675 -0.1839 4.4451 31 1 2.2711 -1.7283 3.5603 32 1 4.7275 0.0665 3.2280 33 1 4.2086 -3.0135 3.5098 34 1 5.8273 -2.2169 3.1264 35 1 5.7264 -0.9538 5.3245 36 1 4.1077 -1.7504 5.7079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361821758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:57 Heat of formation + Delta-G solvation = -173.737778 kcal Electronic energy + Delta-G solvation = -23285.402751 eV Core-core repulsion = 19355.249260 eV Total energy + Delta-G solvation = -3930.153490 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.70912 -47.24516 -47.10169 -39.49814 -37.03933 -34.91042 -33.30668 -32.60089 -27.97441 -26.59777 -25.93896 -23.23980 -22.60984 -22.08070 -20.36307 -18.94213 -18.21249 -17.96726 -16.87642 -16.60381 -16.43289 -15.56961 -14.76345 -14.54275 -14.34179 -14.06467 -14.05023 -13.61469 -13.56572 -13.33967 -13.28882 -13.07047 -12.68170 -12.52955 -12.08817 -11.87162 -11.68374 -11.55409 -11.27908 -11.19880 -11.00806 -10.99646 -10.64274 -10.32044 -10.16995 -9.82840 -9.61848 -9.21507 -8.65812 -7.89227 -6.29502 -4.37921 2.90482 3.15742 3.19873 3.24325 3.27904 3.62588 4.10571 4.16068 4.22511 4.47863 4.58640 5.03045 5.05368 5.12113 5.23308 5.31335 5.38546 5.48410 5.73938 5.83749 5.97299 6.06398 6.11962 6.13436 6.17935 6.35174 6.50887 6.58057 6.67587 7.03244 7.35296 7.63891 7.90705 8.12729 8.62493 8.78380 9.30327 10.77108 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.008510 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.483901 B = 3289.358783 C = 5040.263623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.156 4.156 3 H 0.141 0.859 4 C 0.525 3.475 5 O -0.553 6.553 6 N -0.583 5.583 7 C 0.232 3.768 8 C -0.542 4.542 9 H 0.064 0.936 10 C 0.068 3.932 11 N -0.887 5.887 12 Si 0.895 3.105 13 H -0.279 1.279 14 H -0.284 1.284 15 H -0.272 1.272 16 C 0.151 3.849 17 C -0.161 4.161 18 C -0.174 4.174 19 C -0.180 4.180 20 C 0.466 3.534 21 F -0.171 7.171 22 F -0.186 7.186 23 F -0.184 7.184 24 H 0.105 0.895 25 H 0.071 0.929 26 H 0.063 0.937 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.267 0.733 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.104 0.896 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.164 -6.343 -1.846 6.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 H 0.159 0.841 4 C 0.311 3.689 5 O -0.432 6.432 6 N -0.313 5.313 7 C 0.113 3.887 8 C -0.580 4.580 9 H 0.082 0.918 10 C -0.136 4.136 11 N -0.525 5.525 12 Si 0.723 3.277 13 H -0.205 1.205 14 H -0.210 1.210 15 H -0.196 1.196 16 C 0.028 3.972 17 C -0.180 4.180 18 C -0.211 4.211 19 C -0.217 4.217 20 C 0.411 3.589 21 F -0.152 7.152 22 F -0.167 7.167 23 F -0.166 7.166 24 H 0.123 0.877 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.077 0.923 30 H 0.102 0.898 31 H 0.094 0.906 32 H 0.122 0.878 33 H 0.113 0.887 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.299 -6.755 -1.881 7.379 hybrid contribution -0.729 0.579 0.079 0.934 sum 1.570 -6.176 -1.803 6.623 Atomic orbital electron populations 1.21790 0.89220 1.03752 1.05410 1.22615 1.01778 1.03184 0.90241 0.84111 1.19604 0.77865 0.86892 0.84536 1.90687 1.54008 1.14416 1.84112 1.48081 1.64629 1.09823 1.08722 1.19566 0.97966 0.72625 0.98559 1.21436 0.96782 0.92070 1.47719 0.91767 1.24940 0.97598 0.96338 0.94747 1.69910 1.34108 1.01030 1.47448 0.86533 0.84107 0.78217 0.78882 1.20486 1.21001 1.19622 1.20889 0.91179 0.97775 0.87332 1.22754 0.96557 0.97111 1.01583 1.22972 1.02182 0.95813 1.00173 1.22917 1.02610 1.04841 0.91363 1.20181 0.75388 0.78033 0.85276 1.93191 1.88222 1.37121 1.96679 1.93147 1.88573 1.80992 1.53993 1.93166 1.30160 1.96468 1.96793 0.87656 0.91040 0.91758 0.94048 0.94425 0.92337 0.89763 0.90599 0.87761 0.88725 0.89469 0.89125 0.88924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.40 8.93 37.16 0.33 -2.07 16 2 C -0.16 -2.83 2.22 -91.77 -0.20 -3.03 16 3 H 0.14 2.57 5.73 -51.93 -0.30 2.27 16 4 C 0.53 10.56 6.44 -10.99 -0.07 10.49 16 5 O -0.55 -12.07 14.87 5.56 0.08 -11.99 16 6 N -0.58 -11.61 2.46 -175.06 -0.43 -12.04 16 7 C 0.23 5.11 4.97 -5.19 -0.03 5.08 16 8 C -0.54 -12.84 8.07 -34.44 -0.28 -13.12 16 9 H 0.06 1.53 7.58 -52.49 -0.40 1.14 16 10 C 0.07 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -23.06 13.29 55.43 0.74 -22.32 16 12 Si 0.90 19.32 29.54 -169.99 -5.02 14.30 16 13 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 16 C 0.15 2.69 5.70 -4.04 -0.02 2.66 16 17 C -0.16 -2.57 6.01 -90.62 -0.54 -3.11 16 18 C -0.17 -2.51 10.18 -26.69 -0.27 -2.78 16 19 C -0.18 -2.35 10.26 -26.69 -0.27 -2.63 16 20 C 0.47 8.22 2.53 37.16 0.09 8.31 16 21 F -0.17 -3.16 15.49 2.25 0.03 -3.13 16 22 F -0.19 -3.02 16.71 2.25 0.04 -2.98 16 23 F -0.18 -3.38 17.03 2.25 0.04 -3.34 16 24 H 0.10 1.91 6.49 -51.93 -0.34 1.57 16 25 H 0.07 1.04 7.67 -51.93 -0.40 0.64 16 26 H 0.06 1.04 7.94 -51.92 -0.41 0.63 16 27 H 0.04 0.97 8.08 -51.93 -0.42 0.55 16 28 H 0.04 0.85 5.80 -51.93 -0.30 0.55 16 29 H 0.27 6.65 8.31 -40.82 -0.34 6.31 16 30 H 0.08 1.47 8.10 -51.93 -0.42 1.05 16 31 H 0.08 1.36 7.11 -51.93 -0.37 0.99 16 32 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 33 H 0.09 1.40 8.03 -51.93 -0.42 0.99 16 34 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 36 H 0.09 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 314.88 15.07 4.75 4.75 Total: -1.00 -26.33 314.88 -5.73 -32.06 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -4.60 Total: 3.33 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.36 Total: 1.38 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: 0.31 Total: -34.36 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 9 Polarization: -9.57 SS G_CDS: 0.11 Total: -9.46 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.02 Total: 14.30 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -26.33 -5.73 -32.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361821758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.675 kcal (2) G-P(sol) polarization free energy of solvation -26.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds