Wall clock time and date at job start Tue Mar 31 2020 01:31:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 109.46797 * 2 1 4 4 C 1.50702 * 109.46736 * 119.99518 * 2 1 3 5 5 O 1.21281 * 120.00076 * 88.70355 * 4 2 1 6 6 N 1.34775 * 119.99980 * 268.42327 * 4 2 1 7 7 C 1.46503 * 120.00082 * 355.01305 * 6 4 2 8 8 C 1.50698 * 109.46978 * 91.68353 * 7 6 4 9 9 H 1.08001 * 119.99936 * 0.02562 * 8 7 6 10 10 C 1.37873 * 120.00041 * 179.97438 * 8 7 6 11 11 N 1.31517 * 120.00209 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00088 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47236 * 89.99941 * 12 10 8 14 14 H 1.48500 * 109.47232 * 210.00644 * 12 10 8 15 15 H 1.48504 * 109.46988 * 330.00119 * 12 10 8 16 16 C 1.46499 * 120.00246 * 175.01881 * 6 4 2 17 17 C 1.52997 * 109.47417 * 94.12105 * 16 6 4 18 18 C 1.52999 * 117.50082 * 244.71284 * 17 16 6 19 19 C 1.53008 * 117.49891 * 176.05051 * 17 16 6 20 20 C 1.52999 * 109.47160 * 239.99425 * 2 1 3 21 21 F 1.39892 * 109.47435 * 299.99639 * 20 2 1 22 22 F 1.39895 * 109.47035 * 60.00406 * 20 2 1 23 23 F 1.39902 * 109.46774 * 179.97438 * 20 2 1 24 24 H 1.08994 * 109.47234 * 304.84618 * 1 2 3 25 25 H 1.09002 * 109.46860 * 64.85081 * 1 2 3 26 26 H 1.09009 * 109.46738 * 184.84729 * 1 2 3 27 27 H 1.08997 * 109.47453 * 211.68045 * 7 6 4 28 28 H 1.08998 * 109.47244 * 331.68375 * 7 6 4 29 29 H 0.96996 * 120.00210 * 179.97438 * 11 10 8 30 30 H 1.09000 * 109.47486 * 214.12701 * 16 6 4 31 31 H 1.09002 * 109.47029 * 334.12291 * 16 6 4 32 32 H 1.08993 * 115.55138 * 30.38232 * 17 16 6 33 33 H 1.09004 * 117.49713 * 359.97438 * 18 17 16 34 34 H 1.08995 * 117.49985 * 145.02038 * 18 17 16 35 35 H 1.08998 * 117.49986 * 214.98104 * 19 17 16 36 36 H 1.08997 * 117.49481 * 0.02562 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.2120 -1.9095 1.2076 6 7 2.2872 -0.0121 2.3548 7 6 2.1812 1.4491 2.3496 8 6 0.7883 1.8532 2.7588 9 1 0.0554 1.0972 2.9992 10 6 0.4498 3.1880 2.8273 11 7 1.3424 4.1086 2.5350 12 14 -1.2770 3.6889 3.3339 13 1 -1.3318 3.8550 4.8085 14 1 -1.6327 4.9726 2.6775 15 1 -2.2395 2.6371 2.9181 16 6 2.6702 -0.7143 3.5822 17 6 4.1959 -0.7688 3.6836 18 6 4.8592 -2.1462 3.6221 19 6 4.7983 -1.3841 4.9484 20 6 2.0401 -0.7214 -1.2492 21 9 1.5739 -2.0403 -1.2491 22 9 1.5738 -0.0619 -2.3914 23 9 3.4391 -0.7208 -1.2494 24 1 -0.3633 0.5871 0.8433 25 1 -0.3633 0.4367 -0.9303 26 1 -0.3633 -1.0241 0.0868 27 1 2.9020 1.8682 3.0515 28 1 2.3890 1.8248 1.3477 29 1 1.1042 5.0476 2.5829 30 1 2.2675 -0.1839 4.4451 31 1 2.2711 -1.7283 3.5603 32 1 4.7275 0.0665 3.2280 33 1 4.2086 -3.0135 3.5098 34 1 5.8273 -2.2169 3.1264 35 1 5.7264 -0.9538 5.3245 36 1 4.1077 -1.7504 5.7079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361821758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:31:55 Heat of formation + Delta-G solvation = -185.895710 kcal Electronic energy + Delta-G solvation = -23285.929958 eV Core-core repulsion = 19355.249260 eV Total energy + Delta-G solvation = -3930.680698 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -51.13705 -48.65564 -48.54920 -41.08214 -38.31941 -36.56331 -34.75564 -34.43300 -29.66777 -28.15194 -27.35667 -25.03223 -24.07162 -23.18454 -21.67807 -20.46542 -19.67274 -19.41461 -18.56680 -18.30103 -17.96472 -17.03625 -16.41766 -16.07905 -15.74137 -15.50807 -15.43963 -15.03560 -14.93780 -14.77760 -14.72785 -14.56576 -14.32841 -14.14128 -13.62257 -13.35779 -13.24479 -13.05884 -12.80462 -12.62860 -12.53086 -12.34594 -12.17416 -12.01951 -11.72606 -11.32712 -10.91221 -10.77384 -10.53121 -9.54757 -8.18351 -6.31949 1.37919 1.44978 1.48983 1.56264 1.70413 2.12039 2.43338 2.71329 2.90365 3.03625 3.11972 3.13540 3.63509 3.83234 3.95538 4.01684 4.03501 4.13810 4.39596 4.64744 4.70199 4.73378 4.77510 4.82134 4.90245 5.02063 5.19831 5.21553 5.26853 5.28775 5.64142 5.77826 6.04282 6.45872 6.78719 7.12447 7.40015 8.87616 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.011745 B = 0.008510 C = 0.005554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2383.483901 B = 3289.358783 C = 5040.263623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 H 0.138 0.862 4 C 0.522 3.478 5 O -0.571 6.571 6 N -0.584 5.584 7 C 0.246 3.754 8 C -0.539 4.539 9 H 0.062 0.938 10 C 0.027 3.973 11 N -0.918 5.918 12 Si 0.951 3.049 13 H -0.280 1.280 14 H -0.285 1.285 15 H -0.264 1.264 16 C 0.151 3.849 17 C -0.185 4.185 18 C -0.174 4.174 19 C -0.153 4.153 20 C 0.471 3.529 21 F -0.175 7.175 22 F -0.175 7.175 23 F -0.189 7.189 24 H 0.090 0.910 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.025 0.975 28 H 0.031 0.969 29 H 0.267 0.733 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.727 -6.711 -1.548 7.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.178 4.178 3 H 0.156 0.844 4 C 0.308 3.692 5 O -0.452 6.452 6 N -0.313 5.313 7 C 0.126 3.874 8 C -0.578 4.578 9 H 0.080 0.920 10 C -0.174 4.174 11 N -0.557 5.557 12 Si 0.777 3.223 13 H -0.206 1.206 14 H -0.211 1.211 15 H -0.189 1.189 16 C 0.028 3.972 17 C -0.204 4.204 18 C -0.211 4.211 19 C -0.191 4.191 20 C 0.417 3.583 21 F -0.156 7.156 22 F -0.156 7.156 23 F -0.171 7.171 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.087 0.913 27 H 0.043 0.957 28 H 0.049 0.951 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.862 -7.137 -1.576 7.542 hybrid contribution -0.559 0.662 -0.014 0.867 sum 1.302 -6.475 -1.590 6.793 Atomic orbital electron populations 1.21764 0.87941 1.03945 1.05944 1.22619 1.02804 1.02705 0.89659 0.84406 1.19895 0.77490 0.86756 0.85014 1.90671 1.54923 1.15149 1.84495 1.48087 1.64540 1.09087 1.09590 1.19255 0.96851 0.73728 0.97580 1.21586 0.97244 0.92008 1.46924 0.92005 1.25577 1.00560 0.96431 0.94868 1.70002 1.35713 1.01253 1.48753 0.85654 0.80552 0.77846 0.78267 1.20551 1.21068 1.18854 1.20975 0.92633 0.97208 0.86363 1.22622 0.95210 0.97789 1.04793 1.22999 1.02143 0.94528 1.01410 1.23033 1.03003 1.02507 0.90529 1.20033 0.75126 0.77811 0.85368 1.93184 1.88245 1.37473 1.96716 1.93168 1.88393 1.80722 1.53327 1.93158 1.30612 1.96475 1.96832 0.89151 0.88779 0.91336 0.95656 0.95078 0.92365 0.89882 0.90832 0.89093 0.89267 0.88639 0.87325 0.87595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.43 8.93 71.98 0.64 -3.79 16 2 C -0.16 -5.54 2.22 -11.54 -0.03 -5.56 16 3 H 0.14 5.00 5.73 -2.39 -0.01 4.99 16 4 C 0.52 20.84 6.44 87.66 0.56 21.41 16 5 O -0.57 -24.75 14.87 -3.03 -0.05 -24.79 16 6 N -0.58 -23.30 2.46 -826.16 -2.03 -25.33 16 7 C 0.25 10.91 4.97 85.63 0.43 11.34 16 8 C -0.54 -25.40 8.07 25.60 0.21 -25.19 16 9 H 0.06 2.91 7.58 -2.91 -0.02 2.89 16 10 C 0.03 1.29 5.46 84.65 0.46 1.75 16 11 N -0.92 -47.68 13.29 21.45 0.28 -47.40 16 12 Si 0.95 39.00 29.54 68.60 2.03 41.03 16 13 H -0.28 -11.45 7.11 99.48 0.71 -10.74 16 14 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 15 H -0.26 -10.45 7.11 99.48 0.71 -9.74 16 16 C 0.15 5.32 5.70 86.38 0.49 5.81 16 17 C -0.18 -5.79 6.01 -10.79 -0.06 -5.86 16 18 C -0.17 -4.78 10.18 30.62 0.31 -4.47 16 19 C -0.15 -3.69 10.26 30.62 0.31 -3.38 16 20 C 0.47 16.12 2.53 71.98 0.18 16.30 16 21 F -0.17 -6.28 15.49 44.97 0.70 -5.58 16 22 F -0.17 -5.40 16.71 44.97 0.75 -4.65 16 23 F -0.19 -6.81 17.03 44.97 0.77 -6.04 16 24 H 0.09 3.19 6.49 -2.39 -0.02 3.17 16 25 H 0.09 2.55 7.67 -2.39 -0.02 2.53 16 26 H 0.07 2.12 7.94 -2.38 -0.02 2.10 16 27 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 28 H 0.03 1.43 5.80 -2.39 -0.01 1.42 16 29 H 0.27 13.29 8.31 -92.71 -0.77 12.52 16 30 H 0.08 2.89 8.10 -2.39 -0.02 2.87 16 31 H 0.07 2.61 7.11 -2.39 -0.02 2.59 16 32 H 0.09 3.09 8.14 -2.39 -0.02 3.07 16 33 H 0.09 2.55 8.03 -2.38 -0.02 2.54 16 34 H 0.10 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.11 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -54.10 314.88 7.06 -47.04 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 1.10 Total: 17.36 kcal Atomic # 6 Polarization: 4.85 SS G_CDS: 3.51 Total: 8.36 kcal Atomic # 7 Polarization: -70.98 SS G_CDS: -1.74 Total: -72.72 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.05 Total: -24.79 kcal Atomic # 9 Polarization: -18.48 SS G_CDS: 2.21 Total: -16.27 kcal Atomic # 14 Polarization: 39.00 SS G_CDS: 2.03 Total: 41.03 kcal Total: -54.10 7.06 -47.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361821758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.855 kcal (2) G-P(sol) polarization free energy of solvation -54.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds