Wall clock time and date at job start Tue Mar 31 2020 01:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 115.54585 * 2 1 4 4 C 1.52997 * 117.50041 * 214.33169 * 2 1 3 5 5 C 1.52995 * 117.50008 * 145.66966 * 2 1 3 6 6 H 1.09000 * 117.49852 * 0.02562 * 5 2 1 7 7 C 1.52995 * 117.50193 * 214.98462 * 5 2 1 8 8 C 1.50698 * 109.47586 * 174.99943 * 7 5 2 9 9 O 1.21283 * 119.99725 * 359.97438 * 8 7 5 10 10 N 1.34778 * 120.00202 * 179.97438 * 8 7 5 11 11 C 1.46495 * 120.00003 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46831 * 90.00650 * 11 10 8 13 13 H 1.07998 * 119.99944 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99936 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99777 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47553 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46950 * 119.99811 * 16 14 12 19 19 H 1.48497 * 109.46755 * 239.99319 * 16 14 12 20 20 C 1.46495 * 119.99999 * 0.02562 * 10 8 7 21 21 C 1.53000 * 109.47680 * 89.99467 * 20 10 8 22 22 F 1.39906 * 109.46948 * 59.99579 * 21 20 10 23 23 F 1.39896 * 109.47473 * 180.02562 * 21 20 10 24 24 F 1.39900 * 109.47058 * 300.00392 * 21 20 10 25 25 H 1.09001 * 109.47002 * 154.41394 * 1 2 3 26 26 H 1.08993 * 109.46955 * 274.41831 * 1 2 3 27 27 H 1.09000 * 109.47050 * 34.41660 * 1 2 3 28 28 H 1.09005 * 117.49810 * 359.97438 * 4 2 1 29 29 H 1.08996 * 117.49899 * 144.99601 * 4 2 1 30 30 H 1.09005 * 109.46603 * 295.00004 * 7 5 2 31 31 H 1.09002 * 109.47487 * 54.99260 * 7 5 2 32 32 H 1.08996 * 109.47402 * 210.00211 * 11 10 8 33 33 H 1.09001 * 109.47501 * 330.00612 * 11 10 8 34 34 H 0.97010 * 119.99665 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.47355 * 209.99378 * 20 10 8 36 36 H 1.09005 * 109.46935 * 329.99618 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1207 0.7653 6 1 1.6113 -1.8582 1.2685 7 6 3.5490 -0.7754 1.4718 8 6 4.0217 -1.9670 2.2640 9 8 3.3725 -2.9914 2.2641 10 7 5.1659 -1.8943 2.9725 11 6 5.6251 -3.0524 3.7431 12 6 6.5112 -3.9118 2.8785 13 1 6.7117 -3.6241 1.8570 14 6 7.0649 -5.0657 3.3912 15 7 6.8202 -5.4162 4.6349 16 14 8.1637 -6.1305 2.3196 17 1 8.2806 -5.5208 0.9706 18 1 9.5107 -6.2299 2.9368 19 1 7.5729 -7.4876 2.1994 20 6 5.9498 -0.6567 2.9730 21 6 5.4830 0.2425 4.1195 22 9 5.6620 -0.4234 5.3368 23 9 6.2312 1.4245 4.1195 24 9 4.1284 0.5485 3.9503 25 1 -0.3633 -0.9269 -0.4438 26 1 -0.3633 0.0792 1.0246 27 1 -0.3633 0.8478 -0.5808 28 1 1.6113 -1.8583 -1.2686 29 1 3.1714 -0.8746 -1.2689 30 1 4.3022 -0.5105 0.7297 31 1 3.3890 0.0676 2.1440 32 1 6.1869 -2.7109 4.6125 33 1 4.7643 -3.6343 4.0725 34 1 7.2101 -6.2279 4.9957 35 1 7.0052 -0.8951 3.1049 36 1 5.8102 -0.1379 2.0245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361858704.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:28 Heat of formation + Delta-G solvation = -175.903969 kcal Electronic energy + Delta-G solvation = -22781.394521 eV Core-core repulsion = 18851.147098 eV Total energy + Delta-G solvation = -3930.247424 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -49.86647 -47.43913 -47.28997 -39.42634 -37.51957 -35.26739 -32.83100 -30.49496 -29.27120 -27.89227 -26.41566 -23.30305 -23.05451 -21.19300 -20.22091 -18.96516 -18.30411 -18.17715 -17.43778 -16.50014 -16.00261 -15.82829 -14.84442 -14.64448 -14.30584 -14.16117 -14.12587 -13.92189 -13.78333 -13.50770 -13.46034 -13.15546 -12.72907 -12.69231 -12.27524 -12.23997 -12.04050 -11.73000 -11.33222 -11.32975 -11.11461 -10.95185 -10.66556 -10.24269 -9.89935 -9.75679 -9.68399 -9.05400 -8.49982 -8.01894 -6.10854 -4.16491 2.84089 3.26333 3.27813 3.34807 3.38319 3.49537 3.84153 4.11764 4.23494 4.39198 4.43264 4.71834 4.87659 4.92877 5.11886 5.19704 5.24834 5.28830 5.52301 5.54692 5.64427 5.76029 5.82864 5.86711 5.90799 6.00073 6.26713 6.49387 6.87116 7.28579 7.36771 7.84070 8.09459 8.13332 8.77403 8.91348 9.48892 10.97555 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.006430 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.581786 B = 4353.288721 C = 5839.023029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.158 4.158 3 H 0.101 0.899 4 C -0.174 4.174 5 C -0.129 4.129 6 H 0.118 0.882 7 C -0.126 4.126 8 C 0.515 3.485 9 O -0.519 6.519 10 N -0.599 5.599 11 C 0.241 3.759 12 C -0.531 4.531 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.282 1.282 20 C 0.075 3.925 21 C 0.428 3.572 22 F -0.174 7.174 23 F -0.188 7.188 24 F -0.186 7.186 25 H 0.055 0.945 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.093 0.907 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.264 0.736 35 H 0.129 0.871 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.076 14.252 -6.135 16.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.177 4.177 3 H 0.119 0.881 4 C -0.211 4.211 5 C -0.147 4.147 6 H 0.136 0.864 7 C -0.166 4.166 8 C 0.302 3.698 9 O -0.394 6.394 10 N -0.331 5.331 11 C 0.123 3.877 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.208 1.208 20 C -0.053 4.053 21 C 0.371 3.629 22 F -0.155 7.155 23 F -0.170 7.170 24 F -0.167 7.167 25 H 0.074 0.926 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.411 13.520 -5.963 15.736 hybrid contribution 0.737 -0.416 -0.272 0.889 sum -4.674 13.103 -6.235 15.245 Atomic orbital electron populations 1.21343 0.93013 1.01669 1.01804 1.22414 0.95204 0.94506 1.05536 0.88062 1.23193 1.02355 1.01043 0.94520 1.22152 0.97731 1.01269 0.93575 0.86398 1.21544 0.96955 0.98223 0.99888 1.20389 0.80494 0.89299 0.79604 1.90674 1.54722 1.31847 1.62197 1.48220 1.22491 1.12794 1.49578 1.19494 0.96110 0.81446 0.90637 1.21423 1.29311 1.07630 0.98661 0.92235 1.24937 0.96627 0.97304 0.95118 1.69948 1.44300 1.24790 1.13921 0.86422 0.80008 0.80426 0.80433 1.19783 1.20906 1.20839 1.22596 1.00440 0.86872 0.95438 1.21765 0.75130 0.79882 0.86076 1.93225 1.94878 1.80076 1.47369 1.93155 1.76616 1.50380 1.96842 1.93092 1.34710 1.93717 1.95213 0.92567 0.92210 0.92462 0.88890 0.89027 0.89358 0.88003 0.94212 0.93343 0.92634 0.85309 0.87101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.19 37.16 0.38 -0.81 16 2 C -0.16 -1.76 6.12 -90.62 -0.55 -2.32 16 3 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 4 C -0.17 -2.11 9.83 -26.70 -0.26 -2.37 16 5 C -0.13 -1.82 5.14 -90.59 -0.47 -2.29 16 6 H 0.12 1.94 7.30 -51.93 -0.38 1.56 16 7 C -0.13 -1.83 4.47 -27.89 -0.12 -1.96 16 8 C 0.51 10.29 7.34 -10.99 -0.08 10.21 16 9 O -0.52 -12.68 15.14 5.56 0.08 -12.59 16 10 N -0.60 -12.03 2.37 -175.07 -0.42 -12.44 16 11 C 0.24 6.11 4.95 -5.19 -0.03 6.08 16 12 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 16 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.97 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 C 0.07 1.11 5.33 -4.04 -0.02 1.09 16 21 C 0.43 6.33 3.29 37.16 0.12 6.45 16 22 F -0.17 -3.06 16.22 2.25 0.04 -3.03 16 23 F -0.19 -2.50 17.32 2.25 0.04 -2.46 16 24 F -0.19 -2.75 14.29 2.25 0.03 -2.72 16 25 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 26 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 1.09 8.05 -51.93 -0.42 0.68 16 29 H 0.09 1.03 8.03 -51.93 -0.42 0.61 16 30 H 0.09 1.08 7.14 -51.93 -0.37 0.71 16 31 H 0.10 1.34 5.48 -51.93 -0.28 1.06 16 32 H 0.04 1.02 7.25 -51.93 -0.38 0.65 16 33 H 0.05 1.40 7.42 -51.93 -0.39 1.02 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.13 1.85 8.07 -51.93 -0.42 1.43 16 36 H 0.11 1.24 6.44 -51.93 -0.33 0.90 16 LS Contribution 314.63 15.07 4.74 4.74 Total: -1.00 -31.58 314.63 -5.83 -37.41 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -4.61 Total: -0.82 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.45 Total: 0.88 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.32 Total: -37.77 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.59 kcal Atomic # 9 Polarization: -8.32 SS G_CDS: 0.11 Total: -8.21 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.58 -5.83 -37.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361858704.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.496 kcal (2) G-P(sol) polarization free energy of solvation -31.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds