Wall clock time and date at job start Tue Mar 31 2020 01:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 115.54585 * 2 1 4 4 C 1.52997 * 117.50041 * 214.33169 * 2 1 3 5 5 C 1.52995 * 117.50008 * 145.66966 * 2 1 3 6 6 H 1.09000 * 117.49852 * 0.02562 * 5 2 1 7 7 C 1.52995 * 117.50193 * 214.98462 * 5 2 1 8 8 C 1.50698 * 109.47586 * 174.99943 * 7 5 2 9 9 O 1.21283 * 119.99725 * 359.97438 * 8 7 5 10 10 N 1.34778 * 120.00202 * 179.97438 * 8 7 5 11 11 C 1.46495 * 120.00003 * 179.97438 * 10 8 7 12 12 C 1.50704 * 109.46831 * 90.00650 * 11 10 8 13 13 H 1.07998 * 119.99944 * 359.97438 * 12 11 10 14 14 C 1.37882 * 119.99936 * 180.02562 * 12 11 10 15 15 N 1.31512 * 119.99777 * 359.97438 * 14 12 11 16 16 Si 1.86800 * 119.99770 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47553 * 359.97438 * 16 14 12 18 18 H 1.48501 * 109.46950 * 119.99811 * 16 14 12 19 19 H 1.48497 * 109.46755 * 239.99319 * 16 14 12 20 20 C 1.46495 * 119.99999 * 0.02562 * 10 8 7 21 21 C 1.53000 * 109.47680 * 89.99467 * 20 10 8 22 22 F 1.39906 * 109.46948 * 59.99579 * 21 20 10 23 23 F 1.39896 * 109.47473 * 180.02562 * 21 20 10 24 24 F 1.39900 * 109.47058 * 300.00392 * 21 20 10 25 25 H 1.09001 * 109.47002 * 154.41394 * 1 2 3 26 26 H 1.08993 * 109.46955 * 274.41831 * 1 2 3 27 27 H 1.09000 * 109.47050 * 34.41660 * 1 2 3 28 28 H 1.09005 * 117.49810 * 359.97438 * 4 2 1 29 29 H 1.08996 * 117.49899 * 144.99601 * 4 2 1 30 30 H 1.09005 * 109.46603 * 295.00004 * 7 5 2 31 31 H 1.09002 * 109.47487 * 54.99260 * 7 5 2 32 32 H 1.08996 * 109.47402 * 210.00211 * 11 10 8 33 33 H 1.09001 * 109.47501 * 330.00612 * 11 10 8 34 34 H 0.97010 * 119.99665 * 180.02562 * 15 14 12 35 35 H 1.09000 * 109.47355 * 209.99378 * 20 10 8 36 36 H 1.09005 * 109.46935 * 329.99618 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 2.0001 0.9835 0.0000 4 6 2.2365 -1.1207 -0.7654 5 6 2.2365 -1.1207 0.7653 6 1 1.6113 -1.8582 1.2685 7 6 3.5490 -0.7754 1.4718 8 6 4.0217 -1.9670 2.2640 9 8 3.3725 -2.9914 2.2641 10 7 5.1659 -1.8943 2.9725 11 6 5.6251 -3.0524 3.7431 12 6 6.5112 -3.9118 2.8785 13 1 6.7117 -3.6241 1.8570 14 6 7.0649 -5.0657 3.3912 15 7 6.8202 -5.4162 4.6349 16 14 8.1637 -6.1305 2.3196 17 1 8.2806 -5.5208 0.9706 18 1 9.5107 -6.2299 2.9368 19 1 7.5729 -7.4876 2.1994 20 6 5.9498 -0.6567 2.9730 21 6 5.4830 0.2425 4.1195 22 9 5.6620 -0.4234 5.3368 23 9 6.2312 1.4245 4.1195 24 9 4.1284 0.5485 3.9503 25 1 -0.3633 -0.9269 -0.4438 26 1 -0.3633 0.0792 1.0246 27 1 -0.3633 0.8478 -0.5808 28 1 1.6113 -1.8583 -1.2686 29 1 3.1714 -0.8746 -1.2689 30 1 4.3022 -0.5105 0.7297 31 1 3.3890 0.0676 2.1440 32 1 6.1869 -2.7109 4.6125 33 1 4.7643 -3.6343 4.0725 34 1 7.2101 -6.2279 4.9957 35 1 7.0052 -0.8951 3.1049 36 1 5.8102 -0.1379 2.0245 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361858704.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:28 Heat of formation + Delta-G solvation = -194.394751 kcal Electronic energy + Delta-G solvation = -22782.196342 eV Core-core repulsion = 18851.147098 eV Total energy + Delta-G solvation = -3931.049244 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.08309 -48.61757 -48.55961 -40.93637 -38.59998 -36.91754 -34.87687 -31.79395 -30.72586 -29.12940 -27.95535 -24.95851 -24.55759 -22.28933 -21.22976 -20.35825 -19.53516 -19.44125 -18.99679 -18.29116 -17.55509 -17.30068 -16.43490 -16.01159 -15.66011 -15.48907 -15.41699 -15.10715 -14.99519 -14.77968 -14.70975 -14.43614 -14.15973 -13.93032 -13.66056 -13.52792 -13.37492 -13.09028 -12.93339 -12.80583 -12.61040 -12.24447 -12.22167 -12.14165 -11.73254 -10.91868 -10.79471 -10.65338 -10.49665 -9.76519 -8.23508 -6.37905 1.38467 1.40842 1.49663 1.52286 1.86165 2.05187 2.39812 2.85092 2.89290 3.04668 3.08118 3.23106 3.63023 3.74284 3.96487 4.02428 4.13240 4.35315 4.47573 4.51600 4.58614 4.77236 4.94196 4.95772 4.98509 5.04430 5.20366 5.22800 5.33990 5.43053 5.51586 5.73879 6.01823 6.47986 6.71760 7.22393 7.36514 8.84983 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.013725 B = 0.006430 C = 0.004794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2039.581786 B = 4353.288721 C = 5839.023029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.133 4.133 3 H 0.125 0.875 4 C -0.174 4.174 5 C -0.162 4.162 6 H 0.083 0.917 7 C -0.109 4.109 8 C 0.505 3.495 9 O -0.577 6.577 10 N -0.605 5.605 11 C 0.258 3.742 12 C -0.542 4.542 13 H 0.062 0.938 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.262 1.262 18 H -0.271 1.271 19 H -0.285 1.285 20 C 0.071 3.929 21 C 0.434 3.566 22 F -0.195 7.195 23 F -0.173 7.173 24 F -0.184 7.184 25 H 0.050 0.950 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.107 0.893 30 H 0.123 0.877 31 H 0.119 0.881 32 H 0.030 0.970 33 H -0.002 1.002 34 H 0.267 0.733 35 H 0.135 0.865 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.213 16.435 -8.342 18.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.151 4.151 3 H 0.143 0.857 4 C -0.210 4.210 5 C -0.180 4.180 6 H 0.101 0.899 7 C -0.148 4.148 8 C 0.296 3.704 9 O -0.456 6.456 10 N -0.336 5.336 11 C 0.137 3.863 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.794 3.206 17 H -0.186 1.186 18 H -0.196 1.196 19 H -0.212 1.212 20 C -0.055 4.055 21 C 0.378 3.622 22 F -0.177 7.177 23 F -0.155 7.155 24 F -0.166 7.166 25 H 0.069 0.931 26 H 0.075 0.925 27 H 0.098 0.902 28 H 0.108 0.892 29 H 0.125 0.875 30 H 0.141 0.859 31 H 0.137 0.863 32 H 0.048 0.952 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -4.536 15.764 -8.178 18.329 hybrid contribution 0.412 -1.054 0.447 1.217 sum -4.124 14.709 -7.731 17.121 Atomic orbital electron populations 1.21409 0.92355 1.02419 1.02046 1.22551 0.95753 0.94536 1.02212 0.85706 1.23306 1.03279 1.01572 0.92889 1.22048 0.97987 1.03162 0.94841 0.89893 1.21533 0.97783 0.95500 0.99985 1.21480 0.79564 0.90286 0.79096 1.90645 1.56317 1.34539 1.64095 1.48101 1.23310 1.13275 1.48905 1.18895 0.93563 0.82931 0.90864 1.21725 1.29280 1.08194 0.98844 0.91988 1.25874 0.98148 0.98749 0.96385 1.70076 1.45561 1.25459 1.15767 0.85338 0.78266 0.78029 0.78981 1.18645 1.19603 1.21154 1.22962 0.99983 0.84918 0.97667 1.21627 0.75268 0.80187 0.85117 1.93192 1.95010 1.80691 1.48809 1.93187 1.76224 1.49371 1.96708 1.93094 1.34708 1.93694 1.95110 0.93093 0.92492 0.90249 0.89227 0.87475 0.85949 0.86283 0.95228 0.98375 0.92436 0.84659 0.82316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 10.19 71.98 0.73 -1.45 16 2 C -0.13 -2.55 6.12 -10.79 -0.07 -2.62 16 3 H 0.13 1.87 8.14 -2.38 -0.02 1.85 16 4 C -0.17 -3.82 9.83 30.62 0.30 -3.52 16 5 C -0.16 -4.40 5.14 -10.77 -0.06 -4.46 16 6 H 0.08 2.85 7.30 -2.39 -0.02 2.84 16 7 C -0.11 -2.91 4.47 29.85 0.13 -2.78 16 8 C 0.51 20.30 7.34 87.66 0.64 20.94 16 9 O -0.58 -29.55 15.14 -3.04 -0.05 -29.60 16 10 N -0.61 -24.30 2.37 -826.17 -1.96 -26.26 16 11 C 0.26 13.57 4.95 85.64 0.42 14.00 16 12 C -0.54 -30.09 9.39 25.60 0.24 -29.85 16 13 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 14 C 0.01 0.43 5.46 84.66 0.46 0.89 16 15 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 16 Si 0.97 43.93 29.54 68.60 2.03 45.96 16 17 H -0.26 -11.33 7.11 99.48 0.71 -10.62 16 18 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 19 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 20 C 0.07 1.94 5.33 86.38 0.46 2.40 16 21 C 0.43 12.06 3.29 71.98 0.24 12.30 16 22 F -0.20 -6.87 16.22 44.97 0.73 -6.15 16 23 F -0.17 -4.11 17.32 44.97 0.78 -3.33 16 24 F -0.18 -5.10 14.29 44.97 0.64 -4.46 16 25 H 0.05 0.93 7.90 -2.39 -0.02 0.91 16 26 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.09 2.01 8.05 -2.38 -0.02 1.99 16 29 H 0.11 2.02 8.03 -2.39 -0.02 2.00 16 30 H 0.12 2.44 7.14 -2.38 -0.02 2.42 16 31 H 0.12 2.77 5.48 -2.39 -0.01 2.76 16 32 H 0.03 1.60 7.25 -2.39 -0.02 1.58 16 33 H 0.00 -0.12 7.42 -2.39 -0.02 -0.13 16 34 H 0.27 15.02 8.31 -92.70 -0.77 14.25 16 35 H 0.14 3.60 8.07 -2.39 -0.02 3.58 16 36 H 0.16 2.83 6.44 -2.38 -0.02 2.81 16 Total: -1.00 -72.23 314.63 7.06 -65.17 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: 1.09 Total: 8.32 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 3.51 Total: 5.85 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.68 Total: -81.76 kcal Atomic # 8 Polarization: -29.55 SS G_CDS: -0.05 Total: -29.60 kcal Atomic # 9 Polarization: -16.09 SS G_CDS: 2.15 Total: -13.94 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Total: -72.23 7.06 -65.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361858704.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.228 kcal (2) G-P(sol) polarization free energy of solvation -72.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds