Wall clock time and date at job start Tue Mar 31 2020 01:13:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.55934 * 2 1 4 4 C 1.52993 * 117.49924 * 145.69092 * 2 1 3 5 5 C 1.52996 * 60.00199 * 107.48873 * 4 2 1 6 6 H 1.08996 * 117.49934 * 252.49316 * 5 4 2 7 7 C 1.53003 * 117.50052 * 107.48369 * 5 4 2 8 8 C 1.50697 * 109.46624 * 116.39312 * 7 5 4 9 9 O 1.21283 * 120.00521 * 359.73045 * 8 7 5 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 5 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 C 1.50697 * 109.47293 * 90.00297 * 11 10 8 13 13 H 1.07997 * 120.00010 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00091 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00247 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47226 * 89.99205 * 16 14 12 18 18 H 1.48494 * 109.47051 * 209.99874 * 16 14 12 19 19 H 1.48508 * 109.46947 * 329.99558 * 16 14 12 20 20 C 1.46499 * 119.99971 * 359.72768 * 10 8 7 21 21 C 1.52999 * 109.47276 * 89.99654 * 20 10 8 22 22 F 1.39902 * 109.47007 * 60.00194 * 21 20 10 23 23 F 1.39898 * 109.47439 * 180.02562 * 21 20 10 24 24 F 1.39898 * 109.47483 * 300.00475 * 21 20 10 25 25 H 1.08999 * 109.47050 * 205.68861 * 1 2 3 26 26 H 1.08999 * 109.46952 * 325.68479 * 1 2 3 27 27 H 1.08991 * 109.47052 * 85.68463 * 1 2 3 28 28 H 1.09005 * 117.50274 * 359.97438 * 4 2 1 29 29 H 1.09003 * 117.51769 * 214.97109 * 4 2 1 30 30 H 1.09001 * 109.46782 * 356.40208 * 7 5 4 31 31 H 1.08993 * 109.47555 * 236.39765 * 7 5 4 32 32 H 1.08997 * 109.46865 * 210.00034 * 11 10 8 33 33 H 1.08998 * 109.47058 * 329.99547 * 11 10 8 34 34 H 0.96995 * 120.00744 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.47416 * 209.99869 * 20 10 8 36 36 H 1.09008 * 109.47058 * 330.00468 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2365 -1.1210 -0.7650 6 1 1.6115 -1.8586 -1.2683 7 6 3.5490 -0.7758 -1.4715 8 6 4.0215 -1.9675 -2.2637 9 8 3.3750 -2.9937 -2.2593 10 7 5.1657 -1.8950 -2.9723 11 6 5.6281 -3.0555 -3.7376 12 6 5.0574 -2.9980 -5.1311 13 1 4.4142 -2.1793 -5.4179 14 6 5.3556 -3.9914 -6.0396 15 7 6.1384 -4.9887 -5.6903 16 14 4.6476 -3.9206 -7.7668 17 1 5.5771 -3.1747 -8.6526 18 1 4.4695 -5.3005 -8.2856 19 1 3.3331 -3.2302 -7.7351 20 6 5.9469 -0.6557 -2.9772 21 6 6.9593 -0.6864 -1.8305 22 9 7.8173 -1.7792 -1.9951 23 9 7.7050 0.4973 -1.8348 24 9 6.2812 -0.8054 -0.6126 25 1 -0.3633 -0.9261 0.4455 26 1 -0.3633 0.8488 0.5793 27 1 -0.3633 0.0773 -1.0247 28 1 1.6113 -1.8583 1.2686 29 1 3.1717 -0.8755 1.2682 30 1 4.3022 -0.5110 -0.7295 31 1 3.3891 0.0671 -2.1438 32 1 6.7168 -3.0456 -3.7901 33 1 5.2964 -3.9702 -3.2464 34 1 6.3485 -5.6874 -6.3295 35 1 6.4754 -0.5630 -3.9260 36 1 5.2785 0.1957 -2.8488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361858705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:32 Heat of formation + Delta-G solvation = -175.874298 kcal Electronic energy + Delta-G solvation = -22799.022814 eV Core-core repulsion = 18868.776677 eV Total energy + Delta-G solvation = -3930.246137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.87271 -47.44652 -47.29469 -39.42353 -37.52230 -35.26513 -32.83068 -30.49331 -29.27315 -27.88996 -26.42006 -23.30638 -23.04337 -21.20495 -20.22191 -18.95016 -18.31256 -18.16286 -17.49808 -16.48564 -15.97143 -15.70695 -15.04459 -14.67277 -14.25681 -14.19821 -14.13689 -13.80880 -13.74848 -13.53039 -13.46658 -13.17936 -12.91022 -12.52356 -12.33546 -12.21797 -11.96022 -11.77396 -11.36435 -11.29387 -11.07884 -10.98035 -10.64903 -10.24055 -9.90407 -9.78187 -9.68604 -9.05139 -8.49633 -8.01978 -6.10621 -4.16485 2.83881 3.26364 3.29073 3.34244 3.38131 3.48187 3.84258 4.11819 4.22632 4.39283 4.43725 4.71761 4.87593 4.91904 5.13189 5.20747 5.25022 5.29029 5.52315 5.56196 5.66464 5.76018 5.79842 5.87051 5.90569 5.99761 6.26947 6.50769 6.87233 7.28790 7.36732 7.84062 8.09582 8.13401 8.77425 8.91263 9.48865 10.97750 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.006460 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.511809 B = 4333.265078 C = 5836.115058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.158 4.158 3 H 0.101 0.899 4 C -0.174 4.174 5 C -0.129 4.129 6 H 0.118 0.882 7 C -0.127 4.127 8 C 0.515 3.485 9 O -0.519 6.519 10 N -0.599 5.599 11 C 0.242 3.758 12 C -0.532 4.532 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.280 1.280 18 H -0.285 1.285 19 H -0.274 1.274 20 C 0.075 3.925 21 C 0.428 3.572 22 F -0.174 7.174 23 F -0.188 7.188 24 F -0.186 7.186 25 H 0.055 0.945 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.091 0.909 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.265 0.735 35 H 0.129 0.871 36 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 12.797 9.688 16.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.176 4.176 3 H 0.119 0.881 4 C -0.211 4.211 5 C -0.148 4.148 6 H 0.136 0.864 7 C -0.167 4.167 8 C 0.302 3.698 9 O -0.394 6.394 10 N -0.331 5.331 11 C 0.124 3.876 12 C -0.571 4.571 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.727 3.273 17 H -0.206 1.206 18 H -0.210 1.210 19 H -0.199 1.199 20 C -0.054 4.054 21 C 0.371 3.629 22 F -0.155 7.155 23 F -0.170 7.170 24 F -0.168 7.168 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.078 0.922 28 H 0.111 0.889 29 H 0.110 0.890 30 H 0.117 0.883 31 H 0.110 0.890 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.147 0.853 36 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -3.034 12.010 9.633 15.692 hybrid contribution 0.056 0.029 -0.793 0.796 sum -2.978 12.039 8.840 15.230 Atomic orbital electron populations 1.21343 0.92997 1.01667 1.01821 1.22407 0.95182 0.94489 1.05570 0.88063 1.23178 1.02354 1.01045 0.94520 1.22151 0.97704 1.01333 0.93606 0.86364 1.21552 0.97549 0.97576 0.99994 1.20391 0.80679 0.89555 0.79157 1.90674 1.54263 1.31908 1.62587 1.48226 1.22353 1.13672 1.48845 1.19486 0.95414 0.82511 0.90233 1.21384 1.30574 1.09051 0.96110 0.92273 1.24934 0.95023 0.94985 0.99020 1.69932 1.36000 1.11496 1.35534 0.86476 0.79449 0.77433 0.83940 1.20567 1.21049 1.19874 1.22601 0.94210 0.91569 0.96972 1.21773 0.82726 0.73461 0.84892 1.93224 1.72190 1.54736 1.95392 1.93155 1.78854 1.48236 1.96748 1.93086 1.79372 1.95765 1.48565 0.92570 0.92469 0.92192 0.88911 0.89001 0.88256 0.89049 0.94235 0.93343 0.92571 0.85296 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.19 10.19 37.16 0.38 -0.81 16 2 C -0.16 -1.76 6.13 -90.62 -0.56 -2.31 16 3 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 4 C -0.17 -2.12 9.82 -26.74 -0.26 -2.38 16 5 C -0.13 -1.83 5.13 -90.62 -0.47 -2.30 16 6 H 0.12 1.95 7.31 -51.93 -0.38 1.58 16 7 C -0.13 -1.84 4.47 -27.88 -0.12 -1.96 16 8 C 0.51 10.29 7.34 -10.98 -0.08 10.21 16 9 O -0.52 -12.68 15.14 5.56 0.08 -12.60 16 10 N -0.60 -12.03 2.37 -175.06 -0.42 -12.45 16 11 C 0.24 6.12 4.96 -5.20 -0.03 6.10 16 12 C -0.53 -14.55 9.39 -34.44 -0.32 -14.87 16 13 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 16 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 17 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.07 16 20 C 0.07 1.11 5.33 -4.04 -0.02 1.09 16 21 C 0.43 6.33 3.29 37.16 0.12 6.46 16 22 F -0.17 -3.07 16.23 2.25 0.04 -3.03 16 23 F -0.19 -2.50 17.32 2.25 0.04 -2.46 16 24 F -0.19 -2.76 14.28 2.25 0.03 -2.73 16 25 H 0.06 0.55 7.90 -51.93 -0.41 0.14 16 26 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.09 1.09 8.05 -51.93 -0.42 0.67 16 29 H 0.09 1.06 8.03 -51.93 -0.42 0.65 16 30 H 0.10 1.32 5.19 -51.93 -0.27 1.05 16 31 H 0.09 1.11 7.39 -51.93 -0.38 0.73 16 32 H 0.04 1.02 7.25 -51.93 -0.38 0.64 16 33 H 0.05 1.40 7.42 -51.93 -0.39 1.02 16 34 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 35 H 0.13 1.85 8.07 -51.93 -0.42 1.43 16 36 H 0.11 1.24 6.44 -51.92 -0.33 0.90 16 LS Contribution 314.59 15.07 4.74 4.74 Total: -1.00 -31.55 314.59 -5.83 -37.38 By element: Atomic # 1 Polarization: 3.89 SS G_CDS: -4.61 Total: -0.72 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.46 Total: 0.87 kcal Atomic # 7 Polarization: -38.10 SS G_CDS: 0.32 Total: -37.78 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 9 Polarization: -8.33 SS G_CDS: 0.11 Total: -8.23 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.55 -5.83 -37.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361858705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.494 kcal (2) G-P(sol) polarization free energy of solvation -31.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds