Wall clock time and date at job start Tue Mar 31 2020 01:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 115.55934 * 2 1 4 4 C 1.52993 * 117.49924 * 145.69092 * 2 1 3 5 5 C 1.52996 * 60.00199 * 107.48873 * 4 2 1 6 6 H 1.08996 * 117.49934 * 252.49316 * 5 4 2 7 7 C 1.53003 * 117.50052 * 107.48369 * 5 4 2 8 8 C 1.50697 * 109.46624 * 116.39312 * 7 5 4 9 9 O 1.21283 * 120.00521 * 359.73045 * 8 7 5 10 10 N 1.34784 * 119.99774 * 180.02562 * 8 7 5 11 11 C 1.46499 * 119.99893 * 179.72962 * 10 8 7 12 12 C 1.50697 * 109.47293 * 90.00297 * 11 10 8 13 13 H 1.07997 * 120.00010 * 359.97438 * 12 11 10 14 14 C 1.37875 * 120.00091 * 180.02562 * 12 11 10 15 15 N 1.31517 * 120.00149 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 120.00247 * 179.97438 * 14 12 11 17 17 H 1.48497 * 109.47226 * 89.99205 * 16 14 12 18 18 H 1.48494 * 109.47051 * 209.99874 * 16 14 12 19 19 H 1.48508 * 109.46947 * 329.99558 * 16 14 12 20 20 C 1.46499 * 119.99971 * 359.72768 * 10 8 7 21 21 C 1.52999 * 109.47276 * 89.99654 * 20 10 8 22 22 F 1.39902 * 109.47007 * 60.00194 * 21 20 10 23 23 F 1.39898 * 109.47439 * 180.02562 * 21 20 10 24 24 F 1.39898 * 109.47483 * 300.00475 * 21 20 10 25 25 H 1.08999 * 109.47050 * 205.68861 * 1 2 3 26 26 H 1.08999 * 109.46952 * 325.68479 * 1 2 3 27 27 H 1.08991 * 109.47052 * 85.68463 * 1 2 3 28 28 H 1.09005 * 117.50274 * 359.97438 * 4 2 1 29 29 H 1.09003 * 117.51769 * 214.97109 * 4 2 1 30 30 H 1.09001 * 109.46782 * 356.40208 * 7 5 4 31 31 H 1.08993 * 109.47555 * 236.39765 * 7 5 4 32 32 H 1.08997 * 109.46865 * 210.00034 * 11 10 8 33 33 H 1.08998 * 109.47058 * 329.99547 * 11 10 8 34 34 H 0.96995 * 120.00744 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.47416 * 209.99869 * 20 10 8 36 36 H 1.09008 * 109.47058 * 330.00468 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9833 0.0000 4 6 2.2365 -1.1210 0.7649 5 6 2.2365 -1.1210 -0.7650 6 1 1.6115 -1.8586 -1.2683 7 6 3.5490 -0.7758 -1.4715 8 6 4.0215 -1.9675 -2.2637 9 8 3.3750 -2.9937 -2.2593 10 7 5.1657 -1.8950 -2.9723 11 6 5.6281 -3.0555 -3.7376 12 6 5.0574 -2.9980 -5.1311 13 1 4.4142 -2.1793 -5.4179 14 6 5.3556 -3.9914 -6.0396 15 7 6.1384 -4.9887 -5.6903 16 14 4.6476 -3.9206 -7.7668 17 1 5.5771 -3.1747 -8.6526 18 1 4.4695 -5.3005 -8.2856 19 1 3.3331 -3.2302 -7.7351 20 6 5.9469 -0.6557 -2.9772 21 6 6.9593 -0.6864 -1.8305 22 9 7.8173 -1.7792 -1.9951 23 9 7.7050 0.4973 -1.8348 24 9 6.2812 -0.8054 -0.6126 25 1 -0.3633 -0.9261 0.4455 26 1 -0.3633 0.8488 0.5793 27 1 -0.3633 0.0773 -1.0247 28 1 1.6113 -1.8583 1.2686 29 1 3.1717 -0.8755 1.2682 30 1 4.3022 -0.5110 -0.7295 31 1 3.3891 0.0671 -2.1438 32 1 6.7168 -3.0456 -3.7901 33 1 5.2964 -3.9702 -3.2464 34 1 6.3485 -5.6874 -6.3295 35 1 6.4754 -0.5630 -3.9260 36 1 5.2785 0.1957 -2.8488 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361858705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:31 Heat of formation + Delta-G solvation = -194.347970 kcal Electronic energy + Delta-G solvation = -22799.823892 eV Core-core repulsion = 18868.776677 eV Total energy + Delta-G solvation = -3931.047215 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.08854 -48.62473 -48.56281 -40.93581 -38.60850 -36.91680 -34.87731 -31.79381 -30.72788 -29.12588 -27.96315 -24.95425 -24.55831 -22.31174 -21.22998 -20.34584 -19.54309 -19.42837 -19.03581 -18.30482 -17.55617 -17.17919 -16.43142 -16.23627 -15.60110 -15.46731 -15.39089 -15.01589 -14.99666 -14.81781 -14.71502 -14.47360 -14.26388 -13.91547 -13.62524 -13.53879 -13.26527 -13.08164 -12.94962 -12.87520 -12.57060 -12.26125 -12.22572 -12.12353 -11.76818 -10.91880 -10.81388 -10.64285 -10.49505 -9.76788 -8.23360 -6.37985 1.38575 1.41519 1.49498 1.51453 1.86441 2.04344 2.39907 2.84765 2.89190 3.03641 3.07815 3.23106 3.62462 3.73860 3.96170 4.02499 4.14392 4.36449 4.46674 4.53402 4.57634 4.74492 4.93600 4.95573 4.99165 5.04142 5.20102 5.23044 5.33956 5.42921 5.52129 5.73750 6.01794 6.47949 6.71496 7.22348 7.36463 8.84910 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.006460 C = 0.004797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.511809 B = 4333.265078 C = 5836.115058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.130 4.130 3 H 0.126 0.874 4 C -0.177 4.177 5 C -0.160 4.160 6 H 0.084 0.916 7 C -0.110 4.110 8 C 0.505 3.495 9 O -0.577 6.577 10 N -0.605 5.605 11 C 0.259 3.741 12 C -0.544 4.544 13 H 0.062 0.938 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.262 1.262 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.070 3.930 21 C 0.434 3.566 22 F -0.195 7.195 23 F -0.173 7.173 24 F -0.185 7.185 25 H 0.049 0.951 26 H 0.079 0.921 27 H 0.058 0.942 28 H 0.090 0.910 29 H 0.101 0.899 30 H 0.118 0.882 31 H 0.125 0.875 32 H 0.030 0.970 33 H -0.002 1.002 34 H 0.267 0.733 35 H 0.135 0.865 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.332 15.871 9.663 18.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.148 4.148 3 H 0.144 0.856 4 C -0.214 4.214 5 C -0.179 4.179 6 H 0.103 0.897 7 C -0.149 4.149 8 C 0.296 3.704 9 O -0.456 6.456 10 N -0.336 5.336 11 C 0.138 3.862 12 C -0.582 4.582 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.211 1.211 19 H -0.195 1.195 20 C -0.056 4.056 21 C 0.378 3.622 22 F -0.177 7.177 23 F -0.155 7.155 24 F -0.166 7.166 25 H 0.068 0.932 26 H 0.098 0.902 27 H 0.077 0.923 28 H 0.109 0.891 29 H 0.120 0.880 30 H 0.136 0.864 31 H 0.143 0.857 32 H 0.048 0.952 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -3.574 15.141 9.626 18.294 hybrid contribution 0.239 -0.926 -0.716 1.195 sum -3.334 14.215 8.910 17.105 Atomic orbital electron populations 1.21408 0.92228 1.02396 1.02153 1.22547 0.95769 0.94464 1.01990 0.85632 1.23277 1.03146 1.01880 0.93125 1.22044 0.97941 1.03235 0.94682 0.89726 1.21548 0.97862 0.95447 1.00044 1.21481 0.79773 0.90528 0.78643 1.90645 1.55936 1.34520 1.64498 1.48106 1.23135 1.14133 1.48225 1.18886 0.94431 0.83074 0.89810 1.21697 1.30398 1.09140 0.96968 0.91995 1.25872 0.95290 0.94536 1.03429 1.70064 1.37376 1.12318 1.37078 0.85387 0.78904 0.77462 0.78879 1.18702 1.21080 1.19534 1.22969 0.94684 0.90462 0.97442 1.21627 0.82441 0.73268 0.84848 1.93192 1.72922 1.56073 1.95513 1.93188 1.78490 1.47123 1.96688 1.93087 1.79284 1.95768 1.48488 0.93162 0.90246 0.92304 0.89139 0.88015 0.86395 0.85730 0.95247 0.98379 0.92421 0.84656 0.82274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.14 10.19 71.98 0.73 -1.41 16 2 C -0.13 -2.49 6.13 -10.79 -0.07 -2.56 16 3 H 0.13 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.18 -4.03 9.82 30.59 0.30 -3.72 16 5 C -0.16 -4.37 5.13 -10.79 -0.06 -4.42 16 6 H 0.08 2.90 7.31 -2.39 -0.02 2.88 16 7 C -0.11 -2.94 4.47 29.85 0.13 -2.81 16 8 C 0.51 20.32 7.34 87.65 0.64 20.96 16 9 O -0.58 -29.58 15.14 -3.04 -0.05 -29.62 16 10 N -0.61 -24.32 2.37 -826.16 -1.96 -26.28 16 11 C 0.26 13.61 4.96 85.63 0.42 14.03 16 12 C -0.54 -30.21 9.39 25.60 0.24 -29.97 16 13 H 0.06 3.33 7.81 -2.91 -0.02 3.30 16 14 C 0.01 0.45 5.46 84.65 0.46 0.91 16 15 N -0.93 -55.80 13.29 21.45 0.28 -55.51 16 16 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 17 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.29 -12.85 7.11 99.48 0.71 -12.14 16 19 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 20 C 0.07 1.93 5.33 86.38 0.46 2.40 16 21 C 0.43 12.04 3.29 71.98 0.24 12.28 16 22 F -0.20 -6.87 16.23 44.97 0.73 -6.14 16 23 F -0.17 -4.11 17.32 44.97 0.78 -3.33 16 24 F -0.18 -5.07 14.28 44.97 0.64 -4.43 16 25 H 0.05 0.91 7.90 -2.39 -0.02 0.90 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.09 2.06 8.05 -2.38 -0.02 2.04 16 29 H 0.10 2.10 8.03 -2.39 -0.02 2.08 16 30 H 0.12 2.74 5.19 -2.39 -0.01 2.72 16 31 H 0.12 2.49 7.39 -2.39 -0.02 2.47 16 32 H 0.03 1.59 7.25 -2.39 -0.02 1.57 16 33 H 0.00 -0.12 7.42 -2.39 -0.02 -0.14 16 34 H 0.27 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.14 3.60 8.07 -2.39 -0.02 3.58 16 36 H 0.16 2.83 6.44 -2.38 -0.02 2.82 16 Total: -1.00 -72.18 314.59 7.06 -65.11 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: 1.09 Total: 8.56 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 3.51 Total: 5.69 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -1.68 Total: -81.79 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 9 Polarization: -16.05 SS G_CDS: 2.15 Total: -13.90 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.18 7.06 -65.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361858705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -129.235 kcal (2) G-P(sol) polarization free energy of solvation -72.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds