Wall clock time and date at job start Tue Mar 31 2020 01:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 115.56307 * 2 1 4 4 C 1.53066 * 117.51504 * 145.70016 * 2 1 3 5 5 C 1.52996 * 117.49754 * 214.31026 * 2 1 3 6 6 H 1.09008 * 117.49579 * 145.00210 * 5 2 1 7 7 C 1.52997 * 117.50163 * 0.02562 * 5 2 1 8 8 C 1.50701 * 109.47212 * 175.08603 * 7 5 2 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 5 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 5 11 11 C 1.46497 * 119.99566 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47162 * 90.00410 * 11 10 8 13 13 H 1.07998 * 119.99576 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00057 * 179.97438 * 12 11 10 15 15 N 1.31516 * 119.99930 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 119.99982 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47235 * 59.99855 * 16 14 12 18 18 H 1.48500 * 109.47168 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47142 * 299.99797 * 16 14 12 20 20 C 1.46490 * 120.00111 * 0.02562 * 10 8 7 21 21 C 1.53001 * 109.47305 * 89.99580 * 20 10 8 22 22 F 1.39899 * 109.47079 * 60.00371 * 21 20 10 23 23 F 1.39899 * 109.46978 * 179.97438 * 21 20 10 24 24 F 1.39897 * 109.47363 * 300.00072 * 21 20 10 25 25 H 1.08997 * 109.47131 * 205.68758 * 1 2 3 26 26 H 1.09004 * 109.47190 * 325.69046 * 1 2 3 27 27 H 1.09000 * 109.47123 * 85.69114 * 1 2 3 28 28 H 1.09000 * 117.51137 * 0.02562 * 4 2 1 29 29 H 1.09001 * 117.51860 * 214.95544 * 4 2 1 30 30 H 1.09002 * 109.47153 * 55.08604 * 7 5 2 31 31 H 1.09001 * 109.46832 * 295.08795 * 7 5 2 32 32 H 1.09000 * 109.47018 * 209.99971 * 11 10 8 33 33 H 1.09000 * 109.47828 * 330.00266 * 11 10 8 34 34 H 0.97001 * 119.99961 * 180.02562 * 15 14 12 35 35 H 1.09006 * 109.47028 * 209.99878 * 20 10 8 36 36 H 1.09002 * 109.47109 * 329.99455 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1215 0.7650 5 6 2.2364 -1.1210 -0.7650 6 1 3.1714 -0.8750 -1.2686 7 6 1.3588 -2.1558 -1.4719 8 6 2.2303 -3.0978 -2.2620 9 8 3.4347 -2.9558 -2.2594 10 7 1.6712 -4.0988 -2.9705 11 6 2.5185 -5.0149 -3.7381 12 6 2.9080 -6.1844 -2.8711 13 1 2.5596 -6.2395 -1.8504 14 6 3.7091 -7.1840 -3.3811 15 7 4.1328 -7.1170 -4.6243 16 14 4.1913 -8.6340 -2.3068 17 1 2.9679 -9.3475 -1.8600 18 1 5.0492 -9.5631 -3.0851 19 1 4.9396 -8.1444 -1.1212 20 6 0.2164 -4.2707 -2.9731 21 6 -0.3907 -3.4621 -4.1214 22 9 0.1342 -3.9125 -5.3374 23 9 -1.7800 -3.6268 -4.1241 24 9 -0.0814 -2.1082 -3.9528 25 1 -0.3633 -0.9261 0.4454 26 1 -0.3634 0.8489 0.5793 27 1 -0.3633 0.0772 -1.0248 28 1 1.6123 -1.8595 1.2680 29 1 3.1725 -0.8760 1.2680 30 1 0.6689 -1.6477 -2.1457 31 1 0.7931 -2.7198 -0.7303 32 1 1.9694 -5.3746 -4.6082 33 1 3.4162 -4.4909 -4.0662 34 1 4.6961 -7.8205 -4.9833 35 1 -0.0245 -5.3257 -3.1044 36 1 -0.1926 -3.9198 -2.0256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361858706.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:34 Heat of formation + Delta-G solvation = -193.530429 kcal Electronic energy + Delta-G solvation = -22977.409821 eV Core-core repulsion = 19046.398057 eV Total energy + Delta-G solvation = -3931.011764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.08341 -48.61999 -48.55693 -40.96629 -38.68108 -36.92434 -34.87136 -31.49868 -30.58445 -29.20337 -28.28040 -24.98567 -24.56334 -22.47504 -21.05773 -19.93835 -19.53102 -19.44745 -19.02857 -18.38203 -17.64785 -17.28990 -16.48734 -16.04017 -15.90449 -15.48094 -15.42358 -14.99852 -14.85707 -14.72285 -14.61166 -14.45473 -14.35383 -13.89452 -13.62869 -13.52044 -13.34865 -13.11769 -12.94420 -12.73388 -12.57646 -12.34676 -12.20913 -12.03755 -11.78593 -10.84907 -10.76370 -10.63931 -10.55283 -9.76771 -8.23015 -6.37684 1.38900 1.42945 1.49218 1.50253 1.85879 2.05017 2.40127 2.85488 2.89242 3.04543 3.08354 3.23481 3.64398 3.74202 3.96293 4.02912 4.05480 4.35011 4.49012 4.50207 4.62141 4.75385 4.95062 4.99281 5.04087 5.08031 5.20182 5.27727 5.34021 5.43159 5.51749 5.73804 6.01967 6.47733 6.71431 7.22205 7.36492 8.85054 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.014631 B = 0.006596 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.315730 B = 4244.133677 C = 5589.911356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 H 0.109 0.891 4 C -0.174 4.174 5 C -0.162 4.162 6 H 0.083 0.917 7 C -0.106 4.106 8 C 0.505 3.495 9 O -0.577 6.577 10 N -0.605 5.605 11 C 0.259 3.741 12 C -0.544 4.544 13 H 0.062 0.938 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.257 1.257 18 H -0.282 1.282 19 H -0.278 1.278 20 C 0.070 3.930 21 C 0.434 3.566 22 F -0.195 7.195 23 F -0.173 7.173 24 F -0.184 7.184 25 H 0.065 0.935 26 H 0.073 0.927 27 H 0.063 0.937 28 H 0.106 0.894 29 H 0.090 0.910 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.030 0.970 33 H -0.002 1.002 34 H 0.267 0.733 35 H 0.136 0.864 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.820 10.338 8.253 19.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 H 0.127 0.873 4 C -0.211 4.211 5 C -0.181 4.181 6 H 0.101 0.899 7 C -0.145 4.145 8 C 0.295 3.705 9 O -0.456 6.456 10 N -0.335 5.335 11 C 0.138 3.862 12 C -0.583 4.583 13 H 0.080 0.920 14 C -0.191 4.191 15 N -0.568 5.568 16 Si 0.793 3.207 17 H -0.181 1.181 18 H -0.208 1.208 19 H -0.204 1.204 20 C -0.056 4.056 21 C 0.378 3.622 22 F -0.177 7.177 23 F -0.155 7.155 24 F -0.166 7.166 25 H 0.084 0.916 26 H 0.092 0.908 27 H 0.082 0.918 28 H 0.124 0.876 29 H 0.109 0.891 30 H 0.137 0.863 31 H 0.138 0.862 32 H 0.048 0.952 33 H 0.016 0.984 34 H 0.076 0.924 35 H 0.154 0.846 36 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -13.081 10.330 8.082 18.524 hybrid contribution 0.866 -0.736 -0.407 1.207 sum -12.215 9.594 7.675 17.325 Atomic orbital electron populations 1.21424 0.91160 1.03073 1.02478 1.22527 0.96550 0.93864 1.02225 0.87327 1.23268 1.02831 1.02123 0.92873 1.22012 1.00767 1.00431 0.94887 0.89869 1.21483 0.97762 0.95383 0.99908 1.21492 0.88983 0.80914 0.79075 1.90644 1.17759 1.73150 1.64051 1.48095 1.05959 1.30508 1.48984 1.18887 0.89341 0.87059 0.90899 1.21672 1.31922 1.05789 0.98902 0.91978 1.25869 0.95421 1.01419 0.96395 1.70060 1.35669 1.35240 1.15847 0.85452 0.78774 0.78269 0.78221 1.18105 1.20756 1.20355 1.22961 0.81427 1.03540 0.97632 1.21615 0.76497 0.78932 0.85143 1.93191 1.86629 1.88977 1.48893 1.93188 1.30266 1.95289 1.96716 1.93093 1.92805 1.35567 1.95120 0.91551 0.90765 0.91819 0.87573 0.89127 0.86309 0.86176 0.95213 0.98394 0.92419 0.84647 0.82384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.20 71.98 0.66 -1.15 16 2 C -0.13 -2.61 6.41 -10.77 -0.07 -2.68 16 3 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 4 C -0.17 -3.87 9.83 30.62 0.30 -3.57 16 5 C -0.16 -4.45 5.41 -10.80 -0.06 -4.51 16 6 H 0.08 2.85 7.31 -2.38 -0.02 2.84 16 7 C -0.11 -2.87 3.55 29.85 0.11 -2.76 16 8 C 0.51 20.34 7.34 87.66 0.64 20.99 16 9 O -0.58 -29.62 15.14 -3.03 -0.05 -29.67 16 10 N -0.60 -24.30 2.37 -826.16 -1.96 -26.26 16 11 C 0.26 13.61 4.95 85.64 0.42 14.04 16 12 C -0.54 -30.24 9.39 25.60 0.24 -30.00 16 13 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 14 C 0.01 0.46 5.46 84.65 0.46 0.93 16 15 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 16 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 17 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 19 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 20 C 0.07 1.94 5.33 86.38 0.46 2.40 16 21 C 0.43 12.05 3.29 71.98 0.24 12.29 16 22 F -0.20 -6.86 16.23 44.97 0.73 -6.13 16 23 F -0.17 -4.09 17.32 44.97 0.78 -3.31 16 24 F -0.18 -5.08 14.30 44.97 0.64 -4.44 16 25 H 0.07 0.85 7.90 -2.39 -0.02 0.84 16 26 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.06 0.92 7.83 -2.39 -0.02 0.90 16 28 H 0.11 2.06 7.94 -2.39 -0.02 2.04 16 29 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 30 H 0.12 2.81 5.11 -2.39 -0.01 2.79 16 31 H 0.12 2.46 7.14 -2.39 -0.02 2.45 16 32 H 0.03 1.60 7.25 -2.39 -0.02 1.59 16 33 H 0.00 -0.13 7.42 -2.39 -0.02 -0.15 16 34 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.14 3.61 8.07 -2.38 -0.02 3.59 16 36 H 0.16 2.83 6.44 -2.39 -0.02 2.82 16 Total: -1.00 -72.03 312.62 6.96 -65.07 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: 1.10 Total: 8.38 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 3.41 Total: 5.98 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.68 Total: -81.77 kcal Atomic # 8 Polarization: -29.62 SS G_CDS: -0.05 Total: -29.67 kcal Atomic # 9 Polarization: -16.03 SS G_CDS: 2.15 Total: -13.88 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -72.03 6.96 -65.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361858706.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.462 kcal (2) G-P(sol) polarization free energy of solvation -72.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds