Wall clock time and date at job start Tue Mar 31 2020 01:13:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 115.55923 * 2 1 4 4 C 1.52998 * 117.49961 * 214.31449 * 2 1 3 5 5 C 1.52997 * 117.50146 * 145.68812 * 2 1 3 6 6 H 1.08994 * 117.51783 * 214.97375 * 5 2 1 7 7 C 1.53002 * 117.49616 * 359.97438 * 5 2 1 8 8 C 1.50706 * 109.46771 * 185.01216 * 7 5 2 9 9 O 1.21270 * 120.00190 * 359.97438 * 8 7 5 10 10 N 1.34774 * 119.99638 * 180.02562 * 8 7 5 11 11 C 1.46496 * 120.00119 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47188 * 270.00028 * 11 10 8 13 13 H 1.07994 * 119.99863 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99908 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00198 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99704 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47026 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46805 * 120.00118 * 16 14 12 19 19 H 1.48501 * 109.47244 * 239.99866 * 16 14 12 20 20 C 1.46505 * 120.00261 * 359.97438 * 10 8 7 21 21 C 1.52997 * 109.47212 * 270.00136 * 20 10 8 22 22 F 1.39900 * 109.47010 * 59.99634 * 21 20 10 23 23 F 1.39897 * 109.47422 * 179.97438 * 21 20 10 24 24 F 1.39905 * 109.47157 * 300.00025 * 21 20 10 25 25 H 1.08998 * 109.46924 * 274.31036 * 1 2 3 26 26 H 1.09000 * 109.47173 * 34.30901 * 1 2 3 27 27 H 1.09004 * 109.46723 * 154.30954 * 1 2 3 28 28 H 1.08998 * 117.49907 * 145.01963 * 4 2 1 29 29 H 1.09000 * 117.49845 * 359.97438 * 4 2 1 30 30 H 1.09004 * 109.47389 * 65.01745 * 7 5 2 31 31 H 1.08993 * 109.47428 * 305.01173 * 7 5 2 32 32 H 1.09006 * 109.47349 * 29.99742 * 11 10 8 33 33 H 1.09003 * 109.47665 * 149.99907 * 11 10 8 34 34 H 0.97004 * 120.00297 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47068 * 30.00196 * 20 10 8 36 36 H 1.09001 * 109.47372 * 150.00283 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1209 0.7650 6 1 3.1716 -0.8754 1.2683 7 6 1.3589 -2.1558 1.4720 8 6 2.2303 -3.0963 2.2640 9 8 3.4345 -2.9533 2.2627 10 7 1.6712 -4.0969 2.9729 11 6 2.5181 -5.0109 3.7433 12 6 2.9108 -6.1811 2.8786 13 1 2.5638 -6.2385 1.8576 14 6 3.7130 -7.1785 3.3912 15 7 4.1360 -7.1084 4.6345 16 14 4.1991 -8.6293 2.3196 17 1 3.5981 -8.4718 0.9709 18 1 5.6783 -8.6819 2.1989 19 1 3.7079 -9.8874 2.9372 20 6 0.2164 -4.2701 2.9740 21 6 -0.3926 -3.4608 4.1208 22 9 -0.0842 -2.1068 3.9512 23 9 -1.7818 -3.6257 4.1215 24 9 0.1314 -3.9096 5.3379 25 1 -0.3633 0.0772 1.0247 26 1 -0.3633 0.8489 -0.5792 27 1 -0.3633 -0.9261 -0.4455 28 1 3.1715 -0.8751 -1.2683 29 1 1.6113 -1.8586 -1.2680 30 1 0.7946 -2.7211 0.7303 31 1 0.6679 -1.6476 2.1444 32 1 3.4147 -4.4853 4.0723 33 1 1.9679 -5.3702 4.6130 34 1 4.7001 -7.8102 4.9953 35 1 -0.1918 -3.9204 2.0257 36 1 -0.0239 -5.3250 3.1061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361858707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:38 Heat of formation + Delta-G solvation = -175.121359 kcal Electronic energy + Delta-G solvation = -22976.968118 eV Core-core repulsion = 19046.754631 eV Total energy + Delta-G solvation = -3930.213487 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.86780 -47.44042 -47.29106 -39.46894 -37.58653 -35.26993 -32.82327 -30.05131 -29.21502 -28.26645 -26.57882 -23.30356 -23.06670 -21.44471 -19.81777 -18.71594 -18.29931 -18.18516 -17.51250 -16.65344 -16.13526 -15.72413 -15.00299 -14.66956 -14.25395 -14.20220 -14.15854 -13.78702 -13.71985 -13.49358 -13.42414 -13.22395 -12.90321 -12.56736 -12.41263 -12.14146 -12.00813 -11.70242 -11.44417 -11.31772 -11.04872 -10.95539 -10.66027 -10.24313 -9.83333 -9.75607 -9.70218 -9.06318 -8.49980 -8.01772 -6.10802 -4.16487 2.84088 3.26318 3.28106 3.34800 3.38346 3.49843 3.84705 4.11694 4.23376 4.39203 4.45196 4.72267 4.83160 4.94236 5.09698 5.17360 5.24539 5.28489 5.51785 5.57457 5.62919 5.75634 5.81264 5.87104 5.96413 5.99134 6.27545 6.45899 6.87253 7.28705 7.36814 7.84109 8.09598 8.13382 8.77589 8.91476 9.48927 10.97610 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.006594 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.493671 B = 4245.004449 C = 5590.547266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.159 4.159 3 H 0.102 0.898 4 C -0.174 4.174 5 C -0.129 4.129 6 H 0.118 0.882 7 C -0.125 4.125 8 C 0.514 3.486 9 O -0.520 6.520 10 N -0.599 5.599 11 C 0.241 3.759 12 C -0.531 4.531 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.899 3.101 17 H -0.273 1.273 18 H -0.282 1.282 19 H -0.283 1.283 20 C 0.075 3.925 21 C 0.428 3.572 22 F -0.186 7.186 23 F -0.188 7.188 24 F -0.174 7.174 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.049 0.951 33 H 0.040 0.960 34 H 0.264 0.736 35 H 0.111 0.889 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.436 10.262 -6.122 16.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.177 4.177 3 H 0.120 0.880 4 C -0.211 4.211 5 C -0.148 4.148 6 H 0.136 0.864 7 C -0.164 4.164 8 C 0.302 3.698 9 O -0.395 6.395 10 N -0.331 5.331 11 C 0.123 3.877 12 C -0.570 4.570 13 H 0.078 0.922 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.727 3.273 17 H -0.198 1.198 18 H -0.208 1.208 19 H -0.209 1.209 20 C -0.054 4.054 21 C 0.371 3.629 22 F -0.167 7.167 23 F -0.170 7.170 24 F -0.155 7.155 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.110 0.890 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.120 0.880 32 H 0.067 0.933 33 H 0.058 0.942 34 H 0.074 0.926 35 H 0.129 0.871 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -10.637 10.244 -5.951 15.921 hybrid contribution 0.142 -0.790 -0.276 0.849 sum -10.494 9.454 -6.226 15.436 Atomic orbital electron populations 1.21353 0.93092 1.01706 1.01830 1.22401 0.95223 0.94502 1.05550 0.88015 1.23144 1.02293 1.01196 0.94510 1.22114 1.01056 0.97980 0.93606 0.86448 1.21511 0.98639 0.96441 0.99844 1.20410 0.88958 0.80861 0.79600 1.90670 1.14913 1.71679 1.62199 1.48219 1.03918 1.31358 1.49578 1.19495 0.90316 0.87240 0.90639 1.21422 1.31679 1.05227 0.98690 0.92233 1.24935 0.95542 0.98391 0.95116 1.69944 1.34969 1.34105 1.13952 0.86425 0.78496 0.81950 0.80436 1.19785 1.20836 1.20900 1.22596 0.84762 1.02563 0.95430 1.21763 0.75985 0.79022 0.86080 1.93091 1.92750 1.35683 1.95209 1.93155 1.31624 1.95365 1.96844 1.93225 1.86191 1.88746 1.47381 0.92098 0.92449 0.92542 0.88956 0.88954 0.89407 0.87969 0.93345 0.94212 0.92630 0.87121 0.85314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.19 37.16 0.34 -0.80 16 2 C -0.16 -1.76 6.41 -90.62 -0.58 -2.34 16 3 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 4 C -0.17 -2.12 9.82 -26.73 -0.26 -2.38 16 5 C -0.13 -1.83 5.41 -90.62 -0.49 -2.32 16 6 H 0.12 1.92 7.30 -51.93 -0.38 1.54 16 7 C -0.12 -1.81 3.55 -27.88 -0.10 -1.91 16 8 C 0.51 10.28 7.34 -10.98 -0.08 10.20 16 9 O -0.52 -12.68 15.14 5.57 0.08 -12.60 16 10 N -0.60 -12.02 2.37 -175.05 -0.42 -12.44 16 11 C 0.24 6.11 4.95 -5.19 -0.03 6.08 16 12 C -0.53 -14.54 9.39 -34.44 -0.32 -14.86 16 13 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 14 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 16 Si 0.90 21.38 29.54 -169.99 -5.02 16.36 16 17 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 18 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.07 1.11 5.33 -4.04 -0.02 1.09 16 21 C 0.43 6.31 3.29 37.16 0.12 6.44 16 22 F -0.19 -2.74 14.29 2.25 0.03 -2.71 16 23 F -0.19 -2.49 17.32 2.25 0.04 -2.45 16 24 F -0.17 -3.06 16.22 2.25 0.04 -3.02 16 25 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 28 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.05 7.94 -51.93 -0.41 0.64 16 30 H 0.09 1.09 7.14 -51.93 -0.37 0.72 16 31 H 0.10 1.35 5.11 -51.93 -0.27 1.09 16 32 H 0.05 1.40 7.42 -51.93 -0.39 1.02 16 33 H 0.04 1.02 7.25 -51.93 -0.38 0.65 16 34 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 35 H 0.11 1.24 6.44 -51.93 -0.33 0.90 16 36 H 0.13 1.85 8.07 -51.93 -0.42 1.43 16 LS Contribution 312.59 15.07 4.71 4.71 Total: -1.00 -31.57 312.59 -5.89 -37.46 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.57 Total: -0.84 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -1.52 Total: 0.86 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.32 Total: -37.77 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.08 Total: -12.60 kcal Atomic # 9 Polarization: -8.29 SS G_CDS: 0.11 Total: -8.18 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.57 -5.89 -37.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361858707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.665 kcal (2) G-P(sol) polarization free energy of solvation -31.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds