Wall clock time and date at job start Tue Mar 31 2020 01:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 115.55923 * 2 1 4 4 C 1.52998 * 117.49961 * 214.31449 * 2 1 3 5 5 C 1.52997 * 117.50146 * 145.68812 * 2 1 3 6 6 H 1.08994 * 117.51783 * 214.97375 * 5 2 1 7 7 C 1.53002 * 117.49616 * 359.97438 * 5 2 1 8 8 C 1.50706 * 109.46771 * 185.01216 * 7 5 2 9 9 O 1.21270 * 120.00190 * 359.97438 * 8 7 5 10 10 N 1.34774 * 119.99638 * 180.02562 * 8 7 5 11 11 C 1.46496 * 120.00119 * 180.02562 * 10 8 7 12 12 C 1.50707 * 109.47188 * 270.00028 * 11 10 8 13 13 H 1.07994 * 119.99863 * 359.97438 * 12 11 10 14 14 C 1.37875 * 119.99908 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00198 * 359.97438 * 14 12 11 16 16 Si 1.86805 * 119.99704 * 179.97438 * 14 12 11 17 17 H 1.48491 * 109.47026 * 0.02562 * 16 14 12 18 18 H 1.48505 * 109.46805 * 120.00118 * 16 14 12 19 19 H 1.48501 * 109.47244 * 239.99866 * 16 14 12 20 20 C 1.46505 * 120.00261 * 359.97438 * 10 8 7 21 21 C 1.52997 * 109.47212 * 270.00136 * 20 10 8 22 22 F 1.39900 * 109.47010 * 59.99634 * 21 20 10 23 23 F 1.39897 * 109.47422 * 179.97438 * 21 20 10 24 24 F 1.39905 * 109.47157 * 300.00025 * 21 20 10 25 25 H 1.08998 * 109.46924 * 274.31036 * 1 2 3 26 26 H 1.09000 * 109.47173 * 34.30901 * 1 2 3 27 27 H 1.09004 * 109.46723 * 154.30954 * 1 2 3 28 28 H 1.08998 * 117.49907 * 145.01963 * 4 2 1 29 29 H 1.09000 * 117.49845 * 359.97438 * 4 2 1 30 30 H 1.09004 * 109.47389 * 65.01745 * 7 5 2 31 31 H 1.08993 * 109.47428 * 305.01173 * 7 5 2 32 32 H 1.09006 * 109.47349 * 29.99742 * 11 10 8 33 33 H 1.09003 * 109.47665 * 149.99907 * 11 10 8 34 34 H 0.97004 * 120.00297 * 179.97438 * 15 14 12 35 35 H 1.09002 * 109.47068 * 30.00196 * 20 10 8 36 36 H 1.09001 * 109.47372 * 150.00283 * 20 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0003 0.9834 0.0000 4 6 2.2365 -1.1209 -0.7651 5 6 2.2365 -1.1209 0.7650 6 1 3.1716 -0.8754 1.2683 7 6 1.3589 -2.1558 1.4720 8 6 2.2303 -3.0963 2.2640 9 8 3.4345 -2.9533 2.2627 10 7 1.6712 -4.0969 2.9729 11 6 2.5181 -5.0109 3.7433 12 6 2.9108 -6.1811 2.8786 13 1 2.5638 -6.2385 1.8576 14 6 3.7130 -7.1785 3.3912 15 7 4.1360 -7.1084 4.6345 16 14 4.1991 -8.6293 2.3196 17 1 3.5981 -8.4718 0.9709 18 1 5.6783 -8.6819 2.1989 19 1 3.7079 -9.8874 2.9372 20 6 0.2164 -4.2701 2.9740 21 6 -0.3926 -3.4608 4.1208 22 9 -0.0842 -2.1068 3.9512 23 9 -1.7818 -3.6257 4.1215 24 9 0.1314 -3.9096 5.3379 25 1 -0.3633 0.0772 1.0247 26 1 -0.3633 0.8489 -0.5792 27 1 -0.3633 -0.9261 -0.4455 28 1 3.1715 -0.8751 -1.2683 29 1 1.6113 -1.8586 -1.2680 30 1 0.7946 -2.7211 0.7303 31 1 0.6679 -1.6476 2.1444 32 1 3.4147 -4.4853 4.0723 33 1 1.9679 -5.3702 4.6130 34 1 4.7001 -7.8102 4.9953 35 1 -0.1918 -3.9204 2.0257 36 1 -0.0239 -5.3250 3.1061 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361858707.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:37 Heat of formation + Delta-G solvation = -193.626464 kcal Electronic energy + Delta-G solvation = -22977.770559 eV Core-core repulsion = 19046.754631 eV Total energy + Delta-G solvation = -3931.015929 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -51.08304 -48.61769 -48.55856 -40.96734 -38.68448 -36.92464 -34.87379 -31.49975 -30.58498 -29.20325 -28.28294 -24.98935 -24.56309 -22.47397 -21.05807 -19.93869 -19.53082 -19.44757 -19.03091 -18.38607 -17.65025 -17.29093 -16.48350 -16.04187 -15.89881 -15.48127 -15.42418 -14.99850 -14.85786 -14.72377 -14.61409 -14.46248 -14.35672 -13.89841 -13.62879 -13.52211 -13.34932 -13.12574 -12.92243 -12.73391 -12.60797 -12.34696 -12.22291 -12.03629 -11.73317 -10.84927 -10.76457 -10.65380 -10.55281 -9.76636 -8.23518 -6.37962 1.38396 1.40788 1.49426 1.52221 1.85987 2.05041 2.39758 2.85595 2.89249 3.04492 3.08083 3.23463 3.64369 3.74265 3.96379 4.03053 4.05479 4.35026 4.49039 4.50259 4.62159 4.75419 4.95025 4.99250 5.04115 5.08077 5.20197 5.27756 5.34154 5.43370 5.51749 5.73842 6.01774 6.47732 6.71728 7.22193 7.36401 8.84981 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.014637 B = 0.006594 C = 0.005007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.493671 B = 4245.004449 C = 5590.547266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.134 4.134 3 H 0.109 0.891 4 C -0.174 4.174 5 C -0.162 4.162 6 H 0.083 0.917 7 C -0.106 4.106 8 C 0.505 3.495 9 O -0.577 6.577 10 N -0.605 5.605 11 C 0.258 3.742 12 C -0.542 4.542 13 H 0.062 0.938 14 C 0.008 3.992 15 N -0.929 5.929 16 Si 0.969 3.031 17 H -0.263 1.263 18 H -0.285 1.285 19 H -0.271 1.271 20 C 0.070 3.930 21 C 0.434 3.566 22 F -0.184 7.184 23 F -0.173 7.173 24 F -0.195 7.195 25 H 0.063 0.937 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.120 0.880 31 H 0.119 0.881 32 H -0.002 1.002 33 H 0.030 0.970 34 H 0.267 0.733 35 H 0.159 0.841 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.805 10.350 -8.294 19.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.152 4.152 3 H 0.127 0.873 4 C -0.211 4.211 5 C -0.181 4.181 6 H 0.101 0.899 7 C -0.145 4.145 8 C 0.295 3.705 9 O -0.456 6.456 10 N -0.336 5.336 11 C 0.137 3.863 12 C -0.580 4.580 13 H 0.080 0.920 14 C -0.192 4.192 15 N -0.569 5.569 16 Si 0.794 3.206 17 H -0.187 1.187 18 H -0.212 1.212 19 H -0.196 1.196 20 C -0.056 4.056 21 C 0.378 3.622 22 F -0.166 7.166 23 F -0.155 7.155 24 F -0.177 7.177 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.084 0.916 28 H 0.109 0.891 29 H 0.124 0.876 30 H 0.138 0.862 31 H 0.137 0.863 32 H 0.016 0.984 33 H 0.048 0.952 34 H 0.076 0.924 35 H 0.176 0.824 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.067 10.348 -8.132 18.546 hybrid contribution 0.866 -0.748 0.431 1.222 sum -12.201 9.600 -7.701 17.331 Atomic orbital electron populations 1.21426 0.91168 1.03071 1.02474 1.22518 0.96552 0.93877 1.02230 0.87328 1.23258 1.02838 1.02120 0.92864 1.22012 1.00770 1.00435 0.94888 0.89851 1.21484 0.97767 0.95405 0.99884 1.21486 0.88982 0.80892 0.79098 1.90640 1.17757 1.73096 1.64091 1.48097 1.05972 1.30591 1.48892 1.18899 0.89363 0.87124 0.90867 1.21725 1.31690 1.05759 0.98876 0.91987 1.25872 0.95462 1.01438 0.96385 1.70072 1.35748 1.35254 1.15795 0.85342 0.77737 0.78576 0.78982 1.18653 1.21152 1.19579 1.22963 0.81416 1.03530 0.97658 1.21615 0.76518 0.78945 0.85110 1.93094 1.92828 1.35568 1.95106 1.93188 1.30267 1.95291 1.96709 1.93192 1.86653 1.89031 1.48806 0.91825 0.90766 0.91554 0.89115 0.87577 0.86189 0.86314 0.98369 0.95199 0.92428 0.82394 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.81 9.19 71.98 0.66 -1.15 16 2 C -0.13 -2.61 6.41 -10.79 -0.07 -2.68 16 3 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 4 C -0.17 -3.86 9.82 30.60 0.30 -3.56 16 5 C -0.16 -4.45 5.41 -10.79 -0.06 -4.51 16 6 H 0.08 2.86 7.30 -2.39 -0.02 2.84 16 7 C -0.11 -2.87 3.55 29.85 0.11 -2.76 16 8 C 0.51 20.34 7.34 87.66 0.64 20.98 16 9 O -0.58 -29.57 15.14 -3.00 -0.05 -29.62 16 10 N -0.60 -24.30 2.37 -826.14 -1.96 -26.26 16 11 C 0.26 13.57 4.95 85.64 0.42 13.99 16 12 C -0.54 -30.10 9.39 25.60 0.24 -29.86 16 13 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 14 C 0.01 0.43 5.46 84.65 0.46 0.89 16 15 N -0.93 -55.79 13.29 21.45 0.28 -55.51 16 16 Si 0.97 43.92 29.54 68.60 2.03 45.95 16 17 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 18 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 19 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 20 C 0.07 1.94 5.33 86.38 0.46 2.40 16 21 C 0.43 12.05 3.29 71.98 0.24 12.28 16 22 F -0.18 -5.09 14.29 44.97 0.64 -4.44 16 23 F -0.17 -4.08 17.32 44.97 0.78 -3.31 16 24 F -0.20 -6.85 16.22 44.97 0.73 -6.13 16 25 H 0.06 0.92 7.83 -2.39 -0.02 0.90 16 26 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.07 0.85 7.90 -2.38 -0.02 0.84 16 28 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 29 H 0.11 2.05 7.94 -2.39 -0.02 2.03 16 30 H 0.12 2.46 7.14 -2.38 -0.02 2.45 16 31 H 0.12 2.80 5.11 -2.39 -0.01 2.79 16 32 H 0.00 -0.11 7.42 -2.38 -0.02 -0.13 16 33 H 0.03 1.61 7.25 -2.39 -0.02 1.59 16 34 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 35 H 0.16 2.84 6.44 -2.39 -0.02 2.82 16 36 H 0.14 3.61 8.07 -2.39 -0.02 3.59 16 Total: -1.00 -72.04 312.59 6.96 -65.08 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: 1.10 Total: 8.20 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: 3.41 Total: 6.02 kcal Atomic # 7 Polarization: -80.09 SS G_CDS: -1.68 Total: -81.76 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -0.05 Total: -29.62 kcal Atomic # 9 Polarization: -16.02 SS G_CDS: 2.15 Total: -13.87 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.95 kcal Total: -72.04 6.96 -65.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361858707.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.545 kcal (2) G-P(sol) polarization free energy of solvation -72.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds