Wall clock time and date at job start Tue Mar 31 2020 01:27:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47239 * 2 1 4 4 C 1.53001 * 109.47273 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47521 * 169.49673 * 4 2 1 6 6 H 1.08006 * 119.99619 * 354.01021 * 5 4 2 7 7 C 1.37874 * 120.00242 * 174.01330 * 5 4 2 8 8 N 1.31513 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99802 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47265 * 60.00194 * 9 7 5 11 11 H 1.48508 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47334 * 300.00030 * 9 7 5 13 13 N 1.46903 * 109.47408 * 120.00036 * 2 1 3 14 14 C 1.47156 * 111.00340 * 195.82934 * 13 2 1 15 15 C 1.52897 * 108.66495 * 52.07487 * 14 13 2 16 16 C 1.51166 * 109.70262 * 50.40318 * 15 14 13 17 17 C 1.38690 * 118.38796 * 163.28020 * 16 15 14 18 18 C 1.38016 * 120.36297 * 179.63362 * 17 16 15 19 19 C 1.38379 * 119.81345 * 0.02562 * 18 17 16 20 20 Cl 1.73603 * 120.07750 * 180.11445 * 19 18 17 21 21 C 1.38126 * 119.84045 * 0.08993 * 19 18 17 22 22 C 1.37843 * 121.73691 * 343.08247 * 16 15 14 23 23 C 1.46622 * 110.99798 * 318.84205 * 13 2 1 24 24 H 1.09002 * 109.47456 * 187.39494 * 1 2 3 25 25 H 1.08998 * 109.46985 * 307.39384 * 1 2 3 26 26 H 1.09004 * 109.47200 * 67.39024 * 1 2 3 27 27 H 1.09011 * 109.46779 * 289.49062 * 4 2 1 28 28 H 1.08999 * 109.47005 * 49.49157 * 4 2 1 29 29 H 0.96994 * 119.99928 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.63299 * 171.87855 * 14 13 2 31 31 H 1.08996 * 109.63360 * 292.27012 * 14 13 2 32 32 H 1.09002 * 109.39267 * 170.70702 * 15 14 13 33 33 H 1.09001 * 109.39044 * 290.41265 * 15 14 13 34 34 H 1.08000 * 119.82131 * 359.61460 * 17 16 15 35 35 H 1.08000 * 120.09440 * 180.02562 * 18 17 16 36 36 H 1.08006 * 119.81234 * 179.97438 * 21 19 18 37 37 H 1.09000 * 109.27834 * 49.30944 * 23 13 2 38 38 H 1.08999 * 109.27224 * 168.82159 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5245 -0.5008 -1.3857 6 1 4.0348 0.1714 -0.7118 7 6 4.2313 -1.1574 -2.3708 8 7 3.6100 -1.9763 -3.1911 9 14 6.0713 -0.8837 -2.5402 10 1 6.7497 -1.2872 -1.2825 11 1 6.5913 -1.6990 -3.6673 12 1 6.3357 0.5533 -2.8061 13 7 2.0197 -0.6925 1.1994 14 6 3.4416 -0.3963 1.4359 15 6 3.6329 1.1207 1.4304 16 6 2.6246 1.7648 2.3541 17 6 2.8458 3.0713 2.7635 18 6 1.9476 3.7017 3.6006 19 6 0.8204 3.0261 4.0342 20 17 -0.3155 3.8134 5.0848 21 6 0.6010 1.7241 3.6285 22 6 1.5037 1.0899 2.7878 23 6 1.2232 -0.3318 2.3764 24 1 -0.3634 -1.0191 0.1323 25 1 -0.3633 0.6241 0.8165 26 1 -0.3634 0.3951 -0.9487 27 1 1.8378 -1.7887 -1.1606 28 1 1.5318 -0.3269 -2.1293 29 1 4.1072 -2.4379 -3.8843 30 1 3.7441 -0.8001 2.4020 31 1 4.0452 -0.8444 0.6466 32 1 4.6422 1.3594 1.7660 33 1 3.4905 1.4997 0.4184 34 1 3.7259 3.5983 2.4257 35 1 2.1239 4.7193 3.9164 36 1 -0.2788 1.1971 3.9675 37 1 0.1643 -0.4354 2.1399 38 1 1.4749 -1.0002 3.1998 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411410679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:34 Heat of formation + Delta-G solvation = 22.861886 kcal Electronic energy + Delta-G solvation = -20082.561823 eV Core-core repulsion = 17143.499439 eV Total energy + Delta-G solvation = -2939.062384 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.41473 -37.71908 -36.32331 -33.30049 -32.83290 -31.70966 -29.88114 -29.10867 -26.98539 -24.71100 -23.08988 -22.63989 -22.14809 -20.77298 -18.01806 -16.81553 -16.55872 -15.90821 -15.20105 -14.92654 -14.59768 -14.38648 -13.97009 -13.63199 -13.35922 -13.08168 -12.51486 -12.14365 -12.05265 -11.81944 -11.61513 -11.55976 -11.38007 -11.13781 -11.00614 -10.93361 -10.78513 -10.57429 -10.46559 -10.32341 -9.87598 -9.13191 -8.94641 -8.78829 -8.36324 -8.32532 -7.54172 -5.98546 -3.98055 1.20683 1.29797 2.09960 3.30738 3.36662 3.37552 3.63216 4.44583 4.58239 4.79290 4.87515 4.96319 5.22849 5.36735 5.37758 5.49622 5.59970 5.76521 5.81845 5.85973 5.90864 5.96256 6.02963 6.12444 6.16187 6.21842 6.29551 6.40304 6.62904 6.70644 6.78601 6.87558 7.01990 7.04973 7.52525 7.69925 7.80953 8.02971 8.12810 8.43505 9.05393 9.62123 11.12820 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.004731 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.980151 B = 5916.588848 C = 6446.563346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.076 3.924 3 H 0.040 0.960 4 C 0.032 3.968 5 C -0.520 4.520 6 H 0.066 0.934 7 C 0.060 3.940 8 N -0.892 5.892 9 Si 0.882 3.118 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.505 5.505 14 C 0.043 3.957 15 C -0.126 4.126 16 C -0.060 4.060 17 C -0.110 4.110 18 C -0.117 4.117 19 C -0.042 4.042 20 Cl -0.084 7.084 21 C -0.108 4.108 22 C -0.092 4.092 23 C 0.077 3.923 24 H 0.058 0.942 25 H 0.040 0.960 26 H 0.055 0.945 27 H 0.031 0.969 28 H 0.014 0.986 29 H 0.260 0.740 30 H 0.055 0.945 31 H 0.127 0.873 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.129 0.871 37 H 0.091 0.909 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.324 8.380 13.729 16.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 H 0.058 0.942 4 C -0.006 4.006 5 C -0.558 4.558 6 H 0.084 0.916 7 C -0.142 4.142 8 N -0.531 5.531 9 Si 0.710 3.290 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.226 5.226 14 C -0.084 4.084 15 C -0.164 4.164 16 C -0.060 4.060 17 C -0.128 4.128 18 C -0.136 4.136 19 C -0.068 4.068 20 Cl -0.055 7.055 21 C -0.127 4.127 22 C -0.094 4.094 23 C -0.051 4.051 24 H 0.077 0.923 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.050 0.950 28 H 0.032 0.968 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.144 0.856 32 H 0.092 0.908 33 H 0.118 0.882 34 H 0.146 0.854 35 H 0.146 0.854 36 H 0.147 0.853 37 H 0.109 0.891 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.453 7.780 13.554 16.250 hybrid contribution 0.998 1.283 0.163 1.633 sum -3.455 9.063 13.717 16.799 Atomic orbital electron populations 1.22041 0.96916 1.01245 1.00559 1.21977 0.92625 0.96526 0.91963 0.94202 1.19130 0.95422 0.96594 0.89430 1.21410 0.93702 1.25900 1.14804 0.91648 1.24983 0.97824 0.95400 0.95957 1.69947 1.35776 1.28664 1.18714 0.86824 0.86303 0.78109 0.77776 1.20149 1.21382 1.20408 1.62696 1.02329 1.56224 1.01337 1.22651 0.90801 0.92146 1.02831 1.21398 0.96595 0.99122 0.99256 1.20020 0.95433 0.93816 0.96751 1.21103 0.99422 0.94568 0.97725 1.20909 0.93517 1.00131 0.99018 1.20787 0.93291 0.94237 0.98483 1.98346 1.60910 1.80672 1.65586 1.20971 1.00202 0.92995 0.98579 1.20595 0.93750 0.98666 0.96401 1.21437 1.00208 0.88938 0.94563 0.92320 0.94081 0.92631 0.95026 0.96797 0.93042 0.92606 0.85556 0.90777 0.88174 0.85373 0.85437 0.85298 0.89093 0.90064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 7.97 37.16 0.30 -2.27 16 2 C 0.08 1.51 1.86 -67.71 -0.13 1.38 16 3 H 0.04 0.82 5.07 -51.93 -0.26 0.55 16 4 C 0.03 0.77 4.64 -27.88 -0.13 0.65 16 5 C -0.52 -13.38 6.94 -34.44 -0.24 -13.62 16 6 H 0.07 1.57 3.89 -52.48 -0.20 1.36 16 7 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 8 N -0.89 -25.89 13.29 55.43 0.74 -25.16 16 9 Si 0.88 20.58 29.54 -169.99 -5.02 15.56 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 13 N -0.50 -9.23 4.87 -228.21 -1.11 -10.34 16 14 C 0.04 0.77 5.34 -3.74 -0.02 0.75 16 15 C -0.13 -2.03 4.65 -27.71 -0.13 -2.16 16 16 C -0.06 -0.90 5.23 -104.37 -0.55 -1.44 16 17 C -0.11 -1.45 9.66 -39.50 -0.38 -1.83 16 18 C -0.12 -1.45 9.84 -39.61 -0.39 -1.84 16 19 C -0.04 -0.53 6.32 -39.57 -0.25 -0.78 16 20 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.47 16 21 C -0.11 -1.43 9.43 -39.45 -0.37 -1.80 16 22 C -0.09 -1.34 5.18 -104.63 -0.54 -1.88 16 23 C 0.08 1.16 5.05 -5.16 -0.03 1.13 16 24 H 0.06 0.99 8.06 -51.93 -0.42 0.57 16 25 H 0.04 0.63 6.47 -51.93 -0.34 0.29 16 26 H 0.05 0.94 8.07 -51.93 -0.42 0.52 16 27 H 0.03 0.86 8.14 -51.92 -0.42 0.43 16 28 H 0.01 0.36 8.05 -51.93 -0.42 -0.05 16 29 H 0.26 7.21 8.31 -40.82 -0.34 6.88 16 30 H 0.06 0.91 8.05 -51.93 -0.42 0.49 16 31 H 0.13 2.64 5.12 -51.93 -0.27 2.38 16 32 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.83 5.13 -51.93 -0.27 1.56 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.13 1.48 8.06 -52.48 -0.42 1.06 16 37 H 0.09 1.29 5.60 -51.93 -0.29 1.00 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 305.94 15.07 4.61 4.61 Total: -1.00 -27.74 305.94 -10.21 -37.95 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -4.97 Total: 2.04 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.95 Total: -22.20 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: -0.38 Total: -35.50 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.47 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -27.74 -10.21 -37.95 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411410679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.815 kcal (2) G-P(sol) polarization free energy of solvation -27.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.953 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds