Wall clock time and date at job start Tue Mar 31 2020 01:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47239 * 2 1 4 4 C 1.53001 * 109.47273 * 240.00442 * 2 1 3 5 5 C 1.50698 * 109.47521 * 169.49673 * 4 2 1 6 6 H 1.08006 * 119.99619 * 354.01021 * 5 4 2 7 7 C 1.37874 * 120.00242 * 174.01330 * 5 4 2 8 8 N 1.31513 * 120.00055 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99802 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47265 * 60.00194 * 9 7 5 11 11 H 1.48508 * 109.46873 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47334 * 300.00030 * 9 7 5 13 13 N 1.46903 * 109.47408 * 120.00036 * 2 1 3 14 14 C 1.47156 * 111.00340 * 195.82934 * 13 2 1 15 15 C 1.52897 * 108.66495 * 52.07487 * 14 13 2 16 16 C 1.51166 * 109.70262 * 50.40318 * 15 14 13 17 17 C 1.38690 * 118.38796 * 163.28020 * 16 15 14 18 18 C 1.38016 * 120.36297 * 179.63362 * 17 16 15 19 19 C 1.38379 * 119.81345 * 0.02562 * 18 17 16 20 20 Cl 1.73603 * 120.07750 * 180.11445 * 19 18 17 21 21 C 1.38126 * 119.84045 * 0.08993 * 19 18 17 22 22 C 1.37843 * 121.73691 * 343.08247 * 16 15 14 23 23 C 1.46622 * 110.99798 * 318.84205 * 13 2 1 24 24 H 1.09002 * 109.47456 * 187.39494 * 1 2 3 25 25 H 1.08998 * 109.46985 * 307.39384 * 1 2 3 26 26 H 1.09004 * 109.47200 * 67.39024 * 1 2 3 27 27 H 1.09011 * 109.46779 * 289.49062 * 4 2 1 28 28 H 1.08999 * 109.47005 * 49.49157 * 4 2 1 29 29 H 0.96994 * 119.99928 * 179.97438 * 8 7 5 30 30 H 1.08997 * 109.63299 * 171.87855 * 14 13 2 31 31 H 1.08996 * 109.63360 * 292.27012 * 14 13 2 32 32 H 1.09002 * 109.39267 * 170.70702 * 15 14 13 33 33 H 1.09001 * 109.39044 * 290.41265 * 15 14 13 34 34 H 1.08000 * 119.82131 * 359.61460 * 17 16 15 35 35 H 1.08000 * 120.09440 * 180.02562 * 18 17 16 36 36 H 1.08006 * 119.81234 * 179.97438 * 21 19 18 37 37 H 1.09000 * 109.27834 * 49.30944 * 23 13 2 38 38 H 1.08999 * 109.27224 * 168.82159 * 23 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 3.5245 -0.5008 -1.3857 6 1 4.0348 0.1714 -0.7118 7 6 4.2313 -1.1574 -2.3708 8 7 3.6100 -1.9763 -3.1911 9 14 6.0713 -0.8837 -2.5402 10 1 6.7497 -1.2872 -1.2825 11 1 6.5913 -1.6990 -3.6673 12 1 6.3357 0.5533 -2.8061 13 7 2.0197 -0.6925 1.1994 14 6 3.4416 -0.3963 1.4359 15 6 3.6329 1.1207 1.4304 16 6 2.6246 1.7648 2.3541 17 6 2.8458 3.0713 2.7635 18 6 1.9476 3.7017 3.6006 19 6 0.8204 3.0261 4.0342 20 17 -0.3155 3.8134 5.0848 21 6 0.6010 1.7241 3.6285 22 6 1.5037 1.0899 2.7878 23 6 1.2232 -0.3318 2.3764 24 1 -0.3634 -1.0191 0.1323 25 1 -0.3633 0.6241 0.8165 26 1 -0.3634 0.3951 -0.9487 27 1 1.8378 -1.7887 -1.1606 28 1 1.5318 -0.3269 -2.1293 29 1 4.1072 -2.4379 -3.8843 30 1 3.7441 -0.8001 2.4020 31 1 4.0452 -0.8444 0.6466 32 1 4.6422 1.3594 1.7660 33 1 3.4905 1.4997 0.4184 34 1 3.7259 3.5983 2.4257 35 1 2.1239 4.7193 3.9164 36 1 -0.2788 1.1971 3.9675 37 1 0.1643 -0.4354 2.1399 38 1 1.4749 -1.0002 3.1998 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411410679.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:27:27 Heat of formation + Delta-G solvation = 8.028033 kcal Electronic energy + Delta-G solvation = -20083.205067 eV Core-core repulsion = 17143.499439 eV Total energy + Delta-G solvation = -2939.705628 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 6.14 seconds Orbital eigenvalues (eV) -41.61356 -38.92920 -37.32551 -35.12130 -34.10794 -33.19557 -31.11723 -30.48704 -28.62195 -26.13087 -24.55123 -24.11972 -23.25247 -22.17856 -19.40947 -18.59515 -17.77349 -17.16449 -16.58826 -16.35057 -16.12496 -15.65737 -15.31956 -14.87964 -14.49703 -14.31428 -13.90789 -13.56949 -13.42704 -13.40789 -13.10457 -13.00329 -12.73689 -12.59533 -12.49934 -12.33487 -12.18567 -11.96187 -11.88862 -11.78905 -11.36154 -10.89786 -10.87346 -10.42862 -9.79359 -9.42650 -8.97022 -8.07510 -6.11982 0.17174 0.29709 1.14636 1.44568 1.45837 1.52388 2.47641 2.60443 3.18910 3.29366 3.76412 3.79649 3.93438 4.14767 4.25947 4.28172 4.35443 4.39323 4.55919 4.60922 4.67526 4.69698 4.86952 4.89552 4.96822 4.99619 5.21198 5.22139 5.23967 5.28112 5.35397 5.50092 5.56380 5.66374 5.69665 5.85329 5.96230 6.31698 6.43395 6.55079 7.00550 7.52047 9.04903 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.029812 B = 0.004731 C = 0.004342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.980151 B = 5916.588848 C = 6446.563346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.089 3.911 3 H 0.036 0.964 4 C 0.037 3.963 5 C -0.518 4.518 6 H 0.083 0.917 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.947 3.053 10 H -0.263 1.263 11 H -0.293 1.293 12 H -0.269 1.269 13 N -0.522 5.522 14 C 0.044 3.956 15 C -0.117 4.117 16 C -0.078 4.078 17 C -0.111 4.111 18 C -0.115 4.115 19 C -0.046 4.046 20 Cl -0.071 7.071 21 C -0.109 4.109 22 C -0.102 4.102 23 C 0.081 3.919 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.051 0.949 27 H -0.004 1.004 28 H -0.015 1.015 29 H 0.257 0.743 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.145 0.855 35 H 0.150 0.850 36 H 0.145 0.855 37 H 0.100 0.900 38 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.157 10.150 16.024 19.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.019 4.019 3 H 0.054 0.946 4 C 0.000 4.000 5 C -0.556 4.556 6 H 0.101 0.899 7 C -0.197 4.197 8 N -0.579 5.579 9 Si 0.773 3.227 10 H -0.188 1.188 11 H -0.219 1.219 12 H -0.194 1.194 13 N -0.244 5.244 14 C -0.083 4.083 15 C -0.155 4.155 16 C -0.079 4.079 17 C -0.129 4.129 18 C -0.133 4.133 19 C -0.072 4.072 20 Cl -0.042 7.042 21 C -0.128 4.128 22 C -0.104 4.104 23 C -0.047 4.047 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.070 0.930 27 H 0.014 0.986 28 H 0.004 0.996 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.093 0.907 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.163 0.837 37 H 0.118 0.882 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.287 9.568 15.877 19.026 hybrid contribution 0.878 0.759 -0.469 1.252 sum -3.409 10.327 15.407 18.859 Atomic orbital electron populations 1.21966 0.94862 1.01852 1.01389 1.21650 0.94208 0.95359 0.90686 0.94633 1.18998 0.95240 0.94732 0.91068 1.21870 0.94396 1.25119 1.14234 0.89924 1.25846 1.02518 0.95402 0.95899 1.70109 1.37572 1.30385 1.19800 0.85764 0.80837 0.78227 0.77869 1.18775 1.21921 1.19389 1.62545 1.03008 1.56681 1.02125 1.22478 0.90208 0.93437 1.02204 1.21208 0.98195 0.97640 0.98440 1.19983 0.95572 0.94827 0.97475 1.21283 1.00196 0.93912 0.97497 1.21178 0.92923 1.01039 0.98182 1.20935 0.93627 0.94271 0.98383 1.98355 1.60427 1.80360 1.65092 1.21096 1.00339 0.93279 0.98081 1.20516 0.94213 0.98334 0.97318 1.21446 1.00049 0.89894 0.93349 0.92225 0.91619 0.92973 0.98570 0.99629 0.93376 0.90933 0.89130 0.89147 0.90701 0.83724 0.83257 0.83693 0.88159 0.88769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.81 7.97 71.98 0.57 -4.24 16 2 C 0.09 3.53 1.86 44.91 0.08 3.62 16 3 H 0.04 1.46 5.07 -2.39 -0.01 1.45 16 4 C 0.04 1.90 4.64 29.85 0.14 2.04 16 5 C -0.52 -27.38 6.94 25.60 0.18 -27.20 16 6 H 0.08 4.00 3.89 -2.91 -0.01 3.99 16 7 C 0.00 0.01 5.46 84.65 0.46 0.47 16 8 N -0.94 -56.54 13.29 21.45 0.28 -56.25 16 9 Si 0.95 42.86 29.54 68.60 2.03 44.89 16 10 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 N -0.52 -18.87 4.87 -875.93 -4.27 -23.14 16 14 C 0.04 1.57 5.34 86.22 0.46 2.03 16 15 C -0.12 -3.64 4.65 29.96 0.14 -3.50 16 16 C -0.08 -2.18 5.23 -19.70 -0.10 -2.28 16 17 C -0.11 -2.61 9.66 22.33 0.22 -2.40 16 18 C -0.11 -2.46 9.84 22.25 0.22 -2.24 16 19 C -0.05 -1.02 6.32 22.28 0.14 -0.88 16 20 Cl -0.07 -1.42 28.96 -2.72 -0.08 -1.50 16 21 C -0.11 -2.54 9.43 22.36 0.21 -2.33 16 22 C -0.10 -2.73 5.18 -19.87 -0.10 -2.83 16 23 C 0.08 2.27 5.05 85.59 0.43 2.70 16 24 H 0.06 1.97 8.06 -2.39 -0.02 1.95 16 25 H 0.06 1.88 6.47 -2.39 -0.02 1.86 16 26 H 0.05 1.76 8.07 -2.39 -0.02 1.74 16 27 H 0.00 -0.24 8.14 -2.38 -0.02 -0.26 16 28 H -0.01 -0.81 8.05 -2.39 -0.02 -0.83 16 29 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 30 H 0.07 2.27 8.05 -2.39 -0.02 2.25 16 31 H 0.09 3.84 5.12 -2.39 -0.01 3.82 16 32 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 33 H 0.07 2.70 5.13 -2.39 -0.01 2.69 16 34 H 0.15 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 36 H 0.15 2.84 8.06 -2.91 -0.02 2.82 16 37 H 0.10 2.60 5.60 -2.39 -0.01 2.59 16 38 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 Total: -1.00 -61.07 305.94 2.08 -58.99 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: 1.07 Total: 14.05 kcal Atomic # 6 Polarization: -40.10 SS G_CDS: 3.05 Total: -37.05 kcal Atomic # 7 Polarization: -75.40 SS G_CDS: -3.98 Total: -79.39 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -61.07 2.08 -58.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411410679.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.017 kcal (2) G-P(sol) polarization free energy of solvation -61.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.14 seconds