Wall clock time and date at job start Tue Mar 31 2020 01:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99909 * 2 1 4 4 N 1.46897 * 109.47230 * 125.88282 * 3 2 1 5 5 C 1.46894 * 111.00404 * 162.69451 * 4 3 2 6 6 C 1.50703 * 109.47081 * 296.15011 * 5 4 3 7 7 H 1.07998 * 119.99806 * 354.94025 * 6 5 4 8 8 C 1.37880 * 119.99779 * 174.65960 * 6 5 4 9 9 N 1.31522 * 119.99635 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00359 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47476 * 89.99287 * 10 8 6 12 12 H 1.48501 * 109.47081 * 209.99662 * 10 8 6 13 13 H 1.48510 * 109.47046 * 329.99464 * 10 8 6 14 14 C 1.46903 * 110.99843 * 286.64815 * 4 3 2 15 15 H 1.08994 * 109.47077 * 188.85671 * 14 4 3 16 16 C 1.52998 * 109.47343 * 308.86078 * 14 4 3 17 17 C 1.50701 * 109.47097 * 68.86274 * 14 4 3 18 18 C 1.38239 * 120.00736 * 231.79954 * 17 14 4 19 19 C 1.38222 * 120.01485 * 180.02562 * 18 17 14 20 20 C 1.38253 * 120.02607 * 359.97438 * 19 18 17 21 21 C 1.38198 * 120.01593 * 359.97438 * 20 19 18 22 22 C 1.38332 * 120.00637 * 51.52041 * 17 14 4 23 23 Cl 1.73598 * 120.01644 * 359.97438 * 22 17 14 24 24 H 1.08001 * 120.00016 * 179.97438 * 1 2 3 25 25 H 1.07993 * 120.00219 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99890 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47104 * 5.87963 * 3 2 1 28 28 H 1.09003 * 109.47115 * 245.88363 * 3 2 1 29 29 H 1.09000 * 109.47381 * 176.14740 * 5 4 3 30 30 H 1.09004 * 109.46840 * 56.14821 * 5 4 3 31 31 H 0.96999 * 119.99619 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47319 * 179.97438 * 16 14 4 33 33 H 1.08999 * 109.47151 * 300.00557 * 16 14 4 34 34 H 1.09003 * 109.46795 * 59.99721 * 16 14 4 35 35 H 1.07999 * 119.99181 * 359.97438 * 18 17 14 36 36 H 1.07997 * 119.98228 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.99372 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.00728 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0113 1.3233 1.1221 5 6 4.0329 2.3615 0.9316 6 6 4.8564 2.0380 -0.2884 7 1 4.6967 1.1099 -0.8171 8 6 5.8097 2.9295 -0.7328 9 7 6.5287 2.6470 -1.7972 10 14 6.0810 4.5379 0.1775 11 1 7.1109 4.3437 1.2296 12 1 6.5402 5.5768 -0.7791 13 1 4.8073 4.9720 0.8059 14 6 2.3103 1.5029 2.4005 15 1 3.0386 1.6701 3.1939 16 6 1.3749 2.7099 2.3041 17 6 1.5053 0.2670 2.7100 18 6 0.1640 0.3767 3.0258 19 6 -0.5743 -0.7566 3.3102 20 6 0.0280 -2.0007 3.2784 21 6 1.3686 -2.1118 2.9618 22 6 2.1072 -0.9779 2.6724 23 17 3.7896 -1.1173 2.2680 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3598 2.1309 0.1053 28 1 2.6088 1.4098 -0.9380 29 1 4.6805 2.3992 1.8076 30 1 3.5477 3.3282 0.7966 31 1 7.1996 3.2740 -2.1097 32 1 0.8544 2.8428 3.2525 33 1 1.9571 3.6037 2.0802 34 1 0.6466 2.5426 1.5106 35 1 -0.3070 1.3483 3.0512 36 1 -1.6221 -0.6703 3.5573 37 1 -0.5493 -2.8859 3.5011 38 1 1.8388 -3.0837 2.9366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428847102.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:57 Heat of formation + Delta-G solvation = 59.540987 kcal Electronic energy + Delta-G solvation = -20397.233441 eV Core-core repulsion = 17459.761582 eV Total energy + Delta-G solvation = -2937.471859 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.79595 -37.30192 -35.74332 -33.18731 -32.95674 -31.46732 -30.45651 -28.68091 -27.19758 -25.30243 -23.48205 -22.13024 -21.01598 -19.85098 -18.74918 -17.18629 -16.68337 -15.45478 -15.35414 -15.02996 -14.55663 -14.26306 -13.72614 -13.55162 -13.34148 -13.20581 -12.86497 -12.40783 -12.14873 -11.88477 -11.57636 -11.38089 -11.22402 -11.05145 -10.97151 -10.85365 -10.63566 -10.24588 -10.18908 -10.01938 -9.81651 -9.33695 -9.10814 -8.56304 -8.47913 -8.11306 -7.24809 -6.03380 -4.00014 1.42751 1.44161 2.77974 2.84794 3.28735 3.36247 3.37150 3.84394 4.42804 4.74758 4.88107 5.03714 5.11210 5.28531 5.35305 5.48451 5.50124 5.57791 5.63383 5.73219 5.88437 5.91842 6.06606 6.11739 6.17902 6.31525 6.43139 6.51657 6.57090 6.58026 6.68186 6.90110 6.98632 7.01054 7.14750 7.28407 7.63511 7.93675 8.09642 8.68173 9.07187 9.58684 11.09662 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.006217 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.989612 B = 4503.032133 C = 4740.173183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.111 4.111 3 C 0.074 3.926 4 N -0.501 5.501 5 C 0.162 3.838 6 C -0.504 4.504 7 H 0.082 0.918 8 C 0.069 3.931 9 N -0.900 5.900 10 Si 0.871 3.129 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.267 1.267 14 C 0.112 3.888 15 H 0.088 0.912 16 C -0.188 4.188 17 C -0.049 4.049 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.118 4.118 21 C -0.123 4.123 22 C -0.011 4.011 23 Cl -0.036 7.036 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.105 0.895 27 H 0.034 0.966 28 H 0.100 0.900 29 H 0.024 0.976 30 H -0.009 1.009 31 H 0.263 0.737 32 H 0.055 0.945 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.121 0.879 38 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.964 -5.876 10.420 18.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.130 4.130 3 C -0.053 4.053 4 N -0.223 5.223 5 C 0.036 3.964 6 C -0.542 4.542 7 H 0.100 0.900 8 C -0.133 4.133 9 N -0.540 5.540 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.192 1.192 14 C 0.003 3.997 15 H 0.106 0.894 16 C -0.247 4.247 17 C -0.050 4.050 18 C -0.124 4.124 19 C -0.141 4.141 20 C -0.137 4.137 21 C -0.142 4.142 22 C -0.038 4.038 23 Cl -0.006 7.006 24 H 0.104 0.896 25 H 0.103 0.897 26 H 0.123 0.877 27 H 0.052 0.948 28 H 0.118 0.882 29 H 0.042 0.958 30 H 0.009 0.991 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.139 0.861 38 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.378 -6.250 10.266 17.983 hybrid contribution -0.056 1.591 0.340 1.628 sum -13.433 -4.659 10.605 17.738 Atomic orbital electron populations 1.23494 0.95847 1.00441 1.05764 1.23035 0.95191 0.99328 0.95405 1.21334 0.94047 0.92992 0.96936 1.62225 1.12131 1.49331 0.98628 1.20197 0.89963 0.88265 0.97968 1.21015 1.17518 1.06086 1.09595 0.89962 1.24888 0.95727 0.97846 0.94806 1.69897 1.23505 1.36604 1.23951 0.86926 0.78877 0.84335 0.79984 1.20247 1.21353 1.19237 1.20588 0.94094 0.89795 0.95185 0.89415 1.22552 1.00928 0.99528 1.01671 1.19764 0.93723 0.93912 0.97649 1.21051 0.92955 0.98871 0.99525 1.21043 0.99568 0.92593 1.00864 1.20955 0.94248 0.97559 1.00898 1.21026 0.94319 0.97491 1.01343 1.20834 0.87926 0.93942 1.01090 1.98430 1.12569 1.98067 1.91558 0.89588 0.89653 0.87734 0.94771 0.88171 0.95792 0.99108 0.92753 0.92599 0.91989 0.91596 0.85599 0.86374 0.86137 0.85732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.10 12.56 29.01 0.36 -2.74 16 2 C -0.11 -1.84 6.60 -36.03 -0.24 -2.08 16 3 C 0.07 1.40 4.98 -4.98 -0.02 1.37 16 4 N -0.50 -9.83 2.51 -230.92 -0.58 -10.41 16 5 C 0.16 3.76 3.50 -4.98 -0.02 3.74 16 6 C -0.50 -13.85 8.68 -34.44 -0.30 -14.15 16 7 H 0.08 2.49 7.57 -52.49 -0.40 2.09 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 10 Si 0.87 21.25 27.58 -169.99 -4.69 16.57 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 13 H -0.27 -6.25 6.39 56.52 0.36 -5.89 16 14 C 0.11 1.86 2.16 -68.86 -0.15 1.71 16 15 H 0.09 1.51 7.90 -51.93 -0.41 1.10 16 16 C -0.19 -2.74 7.14 37.16 0.27 -2.47 16 17 C -0.05 -0.73 3.34 -104.59 -0.35 -1.08 16 18 C -0.11 -1.31 7.49 -39.59 -0.30 -1.61 16 19 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 20 C -0.12 -1.30 10.05 -39.59 -0.40 -1.70 16 21 C -0.12 -1.58 9.83 -39.54 -0.39 -1.97 16 22 C -0.01 -0.16 4.68 -39.49 -0.18 -0.35 16 23 Cl -0.04 -0.62 26.53 -51.86 -1.38 -2.00 16 24 H 0.09 1.14 8.06 -52.49 -0.42 0.72 16 25 H 0.09 1.16 7.84 -52.49 -0.41 0.75 16 26 H 0.10 1.86 7.65 -52.49 -0.40 1.46 16 27 H 0.03 0.61 5.08 -51.93 -0.26 0.35 16 28 H 0.10 2.20 6.51 -51.93 -0.34 1.86 16 29 H 0.02 0.57 7.63 -51.93 -0.40 0.17 16 30 H -0.01 -0.20 5.74 -51.93 -0.30 -0.50 16 31 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.06 0.68 7.13 -51.93 -0.37 0.31 16 33 H 0.06 0.98 6.97 -51.93 -0.36 0.62 16 34 H 0.07 0.94 5.78 -51.93 -0.30 0.64 16 35 H 0.13 1.42 5.92 -52.49 -0.31 1.11 16 36 H 0.12 1.02 8.06 -52.49 -0.42 0.59 16 37 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 38 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 309.97 15.07 4.67 4.67 Total: -1.00 -29.14 309.97 -8.54 -37.68 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -5.13 Total: 1.25 kcal Atomic # 6 Polarization: -19.00 SS G_CDS: -2.21 Total: -21.21 kcal Atomic # 7 Polarization: -37.15 SS G_CDS: 0.19 Total: -36.96 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.69 Total: 16.57 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.38 Total: -2.00 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -29.14 -8.54 -37.68 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428847102.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.216 kcal (2) G-P(sol) polarization free energy of solvation -29.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds