Wall clock time and date at job start Tue Mar 31 2020 01:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50695 * 119.99909 * 2 1 4 4 N 1.46897 * 109.47230 * 125.88282 * 3 2 1 5 5 C 1.46894 * 111.00404 * 162.69451 * 4 3 2 6 6 C 1.50703 * 109.47081 * 296.15011 * 5 4 3 7 7 H 1.07998 * 119.99806 * 354.94025 * 6 5 4 8 8 C 1.37880 * 119.99779 * 174.65960 * 6 5 4 9 9 N 1.31522 * 119.99635 * 179.97438 * 8 6 5 10 10 Si 1.86794 * 120.00359 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47476 * 89.99287 * 10 8 6 12 12 H 1.48501 * 109.47081 * 209.99662 * 10 8 6 13 13 H 1.48510 * 109.47046 * 329.99464 * 10 8 6 14 14 C 1.46903 * 110.99843 * 286.64815 * 4 3 2 15 15 H 1.08994 * 109.47077 * 188.85671 * 14 4 3 16 16 C 1.52998 * 109.47343 * 308.86078 * 14 4 3 17 17 C 1.50701 * 109.47097 * 68.86274 * 14 4 3 18 18 C 1.38239 * 120.00736 * 231.79954 * 17 14 4 19 19 C 1.38222 * 120.01485 * 180.02562 * 18 17 14 20 20 C 1.38253 * 120.02607 * 359.97438 * 19 18 17 21 21 C 1.38198 * 120.01593 * 359.97438 * 20 19 18 22 22 C 1.38332 * 120.00637 * 51.52041 * 17 14 4 23 23 Cl 1.73598 * 120.01644 * 359.97438 * 22 17 14 24 24 H 1.08001 * 120.00016 * 179.97438 * 1 2 3 25 25 H 1.07993 * 120.00219 * 0.02562 * 1 2 3 26 26 H 1.08002 * 119.99890 * 180.02562 * 2 1 3 27 27 H 1.09002 * 109.47104 * 5.87963 * 3 2 1 28 28 H 1.09003 * 109.47115 * 245.88363 * 3 2 1 29 29 H 1.09000 * 109.47381 * 176.14740 * 5 4 3 30 30 H 1.09004 * 109.46840 * 56.14821 * 5 4 3 31 31 H 0.96999 * 119.99619 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.47319 * 179.97438 * 16 14 4 33 33 H 1.08999 * 109.47151 * 300.00557 * 16 14 4 34 34 H 1.09003 * 109.46795 * 59.99721 * 16 14 4 35 35 H 1.07999 * 119.99181 * 359.97438 * 18 17 14 36 36 H 1.07997 * 119.98228 * 179.97438 * 19 18 17 37 37 H 1.08001 * 119.99372 * 179.97438 * 20 19 18 38 38 H 1.07998 * 120.00728 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 3.0113 1.3233 1.1221 5 6 4.0329 2.3615 0.9316 6 6 4.8564 2.0380 -0.2884 7 1 4.6967 1.1099 -0.8171 8 6 5.8097 2.9295 -0.7328 9 7 6.5287 2.6470 -1.7972 10 14 6.0810 4.5379 0.1775 11 1 7.1109 4.3437 1.2296 12 1 6.5402 5.5768 -0.7791 13 1 4.8073 4.9720 0.8059 14 6 2.3103 1.5029 2.4005 15 1 3.0386 1.6701 3.1939 16 6 1.3749 2.7099 2.3041 17 6 1.5053 0.2670 2.7100 18 6 0.1640 0.3767 3.0258 19 6 -0.5743 -0.7566 3.3102 20 6 0.0280 -2.0007 3.2784 21 6 1.3686 -2.1118 2.9618 22 6 2.1072 -0.9779 2.6724 23 17 3.7896 -1.1173 2.2680 24 1 -0.5400 -0.9353 -0.0004 25 1 -0.5400 0.9352 -0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3598 2.1309 0.1053 28 1 2.6088 1.4098 -0.9380 29 1 4.6805 2.3992 1.8076 30 1 3.5477 3.3282 0.7966 31 1 7.1996 3.2740 -2.1097 32 1 0.8544 2.8428 3.2525 33 1 1.9571 3.6037 2.0802 34 1 0.6466 2.5426 1.5106 35 1 -0.3070 1.3483 3.0512 36 1 -1.6221 -0.6703 3.5573 37 1 -0.5493 -2.8859 3.5011 38 1 1.8388 -3.0837 2.9366 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428847102.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:56 Heat of formation + Delta-G solvation = 43.807927 kcal Electronic energy + Delta-G solvation = -20397.915678 eV Core-core repulsion = 17459.761582 eV Total energy + Delta-G solvation = -2938.154096 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.94063 -38.60206 -36.94324 -34.96665 -34.41211 -33.00962 -31.44966 -29.96515 -28.87522 -26.70558 -24.90792 -23.10756 -22.60360 -21.12176 -20.08286 -19.05687 -17.89379 -16.94130 -16.69483 -16.27803 -15.90955 -15.68757 -15.16268 -14.71522 -14.62946 -14.52817 -14.37540 -13.98649 -13.54860 -13.34894 -12.82472 -12.76894 -12.64570 -12.47151 -12.30696 -12.14887 -12.00427 -11.81907 -11.64008 -11.56341 -11.44919 -11.22345 -10.76422 -10.29960 -9.52373 -9.22058 -8.77536 -8.24678 -6.26025 0.44398 0.47667 1.34467 1.35048 1.45110 1.60248 1.65379 2.35481 2.86324 3.09059 3.37391 3.78227 4.02718 4.21674 4.24623 4.27197 4.32368 4.43697 4.56711 4.65306 4.74670 4.79975 4.80677 4.89357 4.94164 5.02084 5.14095 5.17501 5.22277 5.35955 5.52137 5.56274 5.64499 5.66819 5.87035 5.98364 6.06487 6.10546 6.49920 6.75396 6.81558 7.36897 8.92043 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024279 B = 0.006217 C = 0.005906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.989612 B = 4503.032133 C = 4740.173183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.131 4.131 3 C 0.084 3.916 4 N -0.510 5.510 5 C 0.175 3.825 6 C -0.501 4.501 7 H 0.037 0.963 8 C 0.008 3.992 9 N -0.950 5.950 10 Si 0.941 3.059 11 H -0.270 1.270 12 H -0.284 1.284 13 H -0.248 1.248 14 C 0.111 3.889 15 H 0.074 0.926 16 C -0.180 4.180 17 C -0.064 4.064 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.109 4.109 21 C -0.131 4.131 22 C -0.028 4.028 23 Cl -0.074 7.074 24 H 0.105 0.895 25 H 0.100 0.900 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.054 0.946 29 H 0.020 0.980 30 H -0.007 1.007 31 H 0.264 0.736 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.070 0.930 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.607 -5.466 12.624 22.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.149 4.149 3 C -0.044 4.044 4 N -0.233 5.233 5 C 0.048 3.952 6 C -0.540 4.540 7 H 0.055 0.945 8 C -0.189 4.189 9 N -0.592 5.592 10 Si 0.765 3.235 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.172 1.172 14 C 0.002 3.998 15 H 0.092 0.908 16 C -0.239 4.239 17 C -0.065 4.065 18 C -0.124 4.124 19 C -0.131 4.131 20 C -0.127 4.127 21 C -0.149 4.149 22 C -0.055 4.055 23 Cl -0.045 7.045 24 H 0.123 0.877 25 H 0.119 0.881 26 H 0.104 0.896 27 H 0.065 0.935 28 H 0.072 0.928 29 H 0.038 0.962 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.104 0.896 33 H 0.064 0.936 34 H 0.089 0.911 35 H 0.161 0.839 36 H 0.171 0.829 37 H 0.170 0.830 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.050 -5.854 12.488 21.930 hybrid contribution 0.930 1.305 -0.334 1.637 sum -16.120 -4.548 12.153 20.694 Atomic orbital electron populations 1.23661 0.94601 1.01946 1.01677 1.22648 0.95886 0.97272 0.99124 1.21161 0.93631 0.94983 0.94585 1.62087 1.12717 1.47978 1.00500 1.19884 0.90553 0.89316 0.95410 1.21205 1.17932 1.04247 1.10587 0.94500 1.25791 0.95468 1.01969 0.95692 1.70062 1.24697 1.38312 1.26094 0.85802 0.79618 0.79348 0.78687 1.19528 1.21018 1.17152 1.20591 0.94385 0.92074 0.92708 0.90777 1.22476 1.00403 0.97541 1.03457 1.19639 0.94724 0.92660 0.99469 1.21256 0.91706 1.00449 0.98955 1.21445 1.01019 0.91700 0.98910 1.21344 0.93292 0.99077 0.99015 1.21224 0.95298 0.97079 1.01341 1.20985 0.86358 0.95236 1.02951 1.98414 1.15845 1.98169 1.92101 0.87688 0.88144 0.89556 0.93492 0.92761 0.96185 0.98986 0.92691 0.89560 0.93589 0.91090 0.83900 0.82910 0.82974 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.61 12.56 67.78 0.85 -3.75 16 2 C -0.13 -4.27 6.60 25.64 0.17 -4.10 16 3 C 0.08 3.22 4.98 85.56 0.43 3.64 16 4 N -0.51 -20.54 2.51 -884.49 -2.22 -22.76 16 5 C 0.18 8.35 3.50 85.56 0.30 8.65 16 6 C -0.50 -29.06 8.68 25.60 0.22 -28.84 16 7 H 0.04 2.41 7.57 -2.91 -0.02 2.39 16 8 C 0.01 0.44 5.47 84.65 0.46 0.90 16 9 N -0.95 -60.29 13.96 21.45 0.30 -59.99 16 10 Si 0.94 44.61 27.58 68.60 1.89 46.50 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 12 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 13 H -0.25 -10.85 6.39 99.48 0.64 -10.22 16 14 C 0.11 3.58 2.16 44.17 0.10 3.67 16 15 H 0.07 2.55 7.90 -2.39 -0.02 2.53 16 16 C -0.18 -4.82 7.14 71.98 0.51 -4.30 16 17 C -0.06 -1.76 3.34 -19.84 -0.07 -1.83 16 18 C -0.11 -2.19 7.49 22.27 0.17 -2.02 16 19 C -0.11 -1.88 10.05 22.27 0.22 -1.65 16 20 C -0.11 -1.92 10.05 22.26 0.22 -1.70 16 21 C -0.13 -3.08 9.83 22.29 0.22 -2.86 16 22 C -0.03 -0.83 4.68 22.33 0.10 -0.73 16 23 Cl -0.07 -2.70 26.53 -2.72 -0.07 -2.77 16 24 H 0.10 2.33 8.06 -2.91 -0.02 2.31 16 25 H 0.10 2.30 7.84 -2.91 -0.02 2.28 16 26 H 0.09 3.15 7.65 -2.91 -0.02 3.13 16 27 H 0.05 1.64 5.08 -2.39 -0.01 1.63 16 28 H 0.05 2.55 6.51 -2.39 -0.02 2.53 16 29 H 0.02 0.97 7.63 -2.39 -0.02 0.95 16 30 H -0.01 -0.35 5.74 -2.38 -0.01 -0.36 16 31 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 32 H 0.09 1.77 7.13 -2.39 -0.02 1.75 16 33 H 0.05 1.37 6.97 -2.39 -0.02 1.35 16 34 H 0.07 1.81 5.78 -2.39 -0.01 1.80 16 35 H 0.14 2.48 5.92 -2.91 -0.02 2.46 16 36 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 37 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 38 H 0.13 2.82 8.06 -2.91 -0.02 2.80 16 Total: -1.00 -67.48 309.97 4.78 -62.70 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.98 Total: 11.24 kcal Atomic # 6 Polarization: -38.82 SS G_CDS: 3.91 Total: -34.91 kcal Atomic # 7 Polarization: -80.83 SS G_CDS: -1.92 Total: -82.76 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.89 Total: 46.50 kcal Atomic # 17 Polarization: -2.70 SS G_CDS: -0.07 Total: -2.77 kcal Total: -67.48 4.78 -62.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428847102.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.509 kcal (2) G-P(sol) polarization free energy of solvation -67.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds