Wall clock time and date at job start Tue Mar 31 2020 00:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47263 * 2 1 4 4 H 1.08999 * 109.47041 * 185.34840 * 3 2 1 5 5 C 1.52997 * 109.46827 * 305.35007 * 3 2 1 6 6 C 1.52999 * 109.47332 * 293.04885 * 5 3 2 7 7 F 1.39904 * 109.46806 * 64.65945 * 6 5 3 8 8 F 1.39896 * 109.47750 * 184.65803 * 6 5 3 9 9 F 1.39901 * 109.47169 * 304.66562 * 6 5 3 10 10 C 1.50705 * 109.47003 * 65.34685 * 3 2 1 11 11 O 1.21287 * 120.00027 * 250.49625 * 10 3 2 12 12 N 1.34775 * 119.99625 * 70.49171 * 10 3 2 13 13 C 1.37101 * 119.99877 * 185.62706 * 12 10 3 14 14 H 1.08000 * 119.99890 * 326.46488 * 13 12 10 15 15 C 1.38946 * 119.99803 * 146.18059 * 13 12 10 16 16 N 1.31411 * 120.00365 * 3.22072 * 15 13 12 17 17 Si 1.86800 * 119.99775 * 183.21640 * 15 13 12 18 18 H 1.48504 * 109.47019 * 60.00716 * 17 15 13 19 19 H 1.48510 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47558 * 300.00378 * 17 15 13 21 21 C 1.46499 * 120.00531 * 5.63592 * 12 10 3 22 22 C 1.53000 * 117.50111 * 133.28919 * 21 12 10 23 23 C 1.53001 * 117.49677 * 64.63265 * 21 12 10 24 24 H 1.09001 * 109.47017 * 305.63491 * 1 2 3 25 25 H 1.09003 * 109.47601 * 65.63252 * 1 2 3 26 26 H 1.09004 * 109.47368 * 185.63838 * 1 2 3 27 27 H 1.09001 * 109.47098 * 240.00002 * 2 1 3 28 28 H 1.09004 * 109.47405 * 120.00146 * 2 1 3 29 29 H 1.08994 * 109.47598 * 53.05261 * 5 3 2 30 30 H 1.09006 * 109.46770 * 173.05466 * 5 3 2 31 31 H 0.96990 * 120.00296 * 184.99790 * 16 15 13 32 32 H 1.08995 * 115.54785 * 278.96694 * 21 12 10 33 33 H 1.09000 * 117.49932 * 0.02562 * 22 21 12 34 34 H 1.09004 * 117.49512 * 145.02211 * 22 21 12 35 35 H 1.09007 * 117.49966 * 214.98194 * 23 21 12 36 36 H 1.08996 * 117.50175 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1258 1.4440 -0.0958 5 6 1.4231 2.2015 -1.1765 6 6 1.9580 1.6279 -2.4902 7 9 1.5291 0.3035 -2.6297 8 9 1.4775 2.3888 -3.5613 9 9 3.3564 1.6666 -2.4809 10 6 1.6487 2.1137 1.2914 11 8 0.7990 2.9792 1.2918 12 7 2.2428 1.7520 2.4457 13 6 1.8079 2.2780 3.6347 14 1 1.4318 3.2898 3.6722 15 6 1.8454 1.5075 4.7904 16 7 2.3561 0.2972 4.7569 17 14 1.1698 2.1922 6.3917 18 1 -0.2696 2.5163 6.2233 19 1 1.3273 1.1810 7.4679 20 1 1.9150 3.4235 6.7572 21 6 3.3536 0.7970 2.4301 22 6 4.5958 1.1445 3.2529 23 6 4.6426 1.2240 1.7250 24 1 -0.3633 0.5987 0.8352 25 1 -0.3634 0.4240 -0.9361 26 1 -0.3634 -1.0227 0.1010 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.3387 2.0957 -1.1488 30 1 1.6872 3.2568 -1.1067 31 1 2.3170 -0.2677 5.5444 32 1 3.0696 -0.2534 2.3667 33 1 4.5865 2.0836 3.8063 34 1 5.1292 0.3226 3.7306 35 1 5.2068 0.4545 1.1981 36 1 4.6640 2.2154 1.2725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448789004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:31 Heat of formation + Delta-G solvation = -166.334101 kcal Electronic energy + Delta-G solvation = -23655.142215 eV Core-core repulsion = 19725.309772 eV Total energy + Delta-G solvation = -3929.832443 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.96079 -47.45922 -47.40070 -39.29363 -36.41211 -34.96192 -32.98162 -31.14648 -30.25047 -26.93582 -24.70860 -23.15616 -22.11583 -21.36631 -20.75234 -18.77925 -18.38722 -17.99218 -17.01886 -16.69981 -15.49162 -15.25094 -15.10582 -14.73696 -14.32423 -14.17102 -14.00397 -13.89073 -13.69346 -13.56125 -13.17225 -13.04848 -12.56450 -12.34243 -11.93070 -11.84676 -11.52529 -11.18199 -11.15624 -10.73817 -10.68522 -10.62050 -10.43932 -10.40066 -10.23938 -9.65617 -9.38013 -8.82066 -8.37654 -7.64910 -6.31808 -3.97735 2.97559 3.18348 3.23836 3.27493 3.80486 3.95845 4.14678 4.25336 4.29918 4.72435 4.81887 5.04780 5.10425 5.25732 5.43962 5.64411 5.77420 5.80131 5.84327 5.89770 6.03028 6.18895 6.24319 6.27545 6.30709 6.45641 6.59815 6.75438 6.79841 6.95643 7.18419 7.54566 8.16032 8.46056 9.14649 9.36579 9.92827 10.73623 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.005851 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.328118 B = 4784.751591 C = 5092.236073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.106 4.106 4 H 0.098 0.902 5 C -0.147 4.147 6 C 0.450 3.550 7 F -0.181 7.181 8 F -0.190 7.190 9 F -0.185 7.185 10 C 0.475 3.525 11 O -0.583 6.583 12 N -0.419 5.419 13 C -0.313 4.313 14 H 0.092 0.908 15 C 0.045 3.955 16 N -0.872 5.872 17 Si 0.919 3.081 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.274 1.274 21 C 0.132 3.868 22 C -0.132 4.132 23 C -0.231 4.231 24 H 0.064 0.936 25 H 0.049 0.951 26 H 0.051 0.949 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.117 0.883 30 H 0.110 0.890 31 H 0.267 0.733 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.257 -2.010 -9.576 10.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.128 4.128 4 H 0.116 0.884 5 C -0.186 4.186 6 C 0.396 3.604 7 F -0.162 7.162 8 F -0.171 7.171 9 F -0.167 7.167 10 C 0.263 3.737 11 O -0.468 6.468 12 N -0.137 5.137 13 C -0.440 4.440 14 H 0.110 0.890 15 C -0.160 4.160 16 N -0.509 5.509 17 Si 0.746 3.254 18 H -0.199 1.199 19 H -0.210 1.210 20 H -0.200 1.200 21 C 0.026 3.974 22 C -0.169 4.169 23 C -0.270 4.270 24 H 0.083 0.917 25 H 0.068 0.932 26 H 0.070 0.930 27 H 0.092 0.908 28 H 0.097 0.903 29 H 0.135 0.865 30 H 0.128 0.872 31 H 0.078 0.922 32 H 0.123 0.877 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 1.949 -1.737 -9.404 9.759 hybrid contribution -0.093 0.039 0.717 0.724 sum 1.855 -1.698 -8.686 9.043 Atomic orbital electron populations 1.21806 0.95582 1.01476 1.01944 1.21733 0.96836 0.94341 1.03450 1.21290 1.01852 0.96270 0.93372 0.88427 1.22759 1.04734 1.02631 0.88458 1.20823 0.75716 0.76083 0.87729 1.93121 1.89625 1.37143 1.96315 1.93157 1.88087 1.75936 1.59956 1.93159 1.30407 1.96268 1.96866 1.19644 0.83616 0.85901 0.84556 1.90527 1.35440 1.34330 1.86484 1.42946 1.26792 1.38721 1.05226 1.19414 1.41525 0.99061 0.84038 0.89029 1.25340 0.95876 0.95306 0.99454 1.69857 1.42289 1.08092 1.30671 0.86123 0.79813 0.78437 0.81049 1.19882 1.20981 1.19975 1.21148 0.81401 0.93096 1.01707 1.22636 1.00891 1.02497 0.90925 1.23608 1.04218 1.02058 0.97097 0.91661 0.93196 0.93010 0.90791 0.90326 0.86475 0.87195 0.92234 0.87694 0.89266 0.89752 0.89495 0.89874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.01 37.15 0.33 -2.13 16 2 C -0.13 -2.07 4.98 -26.73 -0.13 -2.20 16 3 C -0.11 -1.87 1.70 -91.77 -0.16 -2.03 16 4 H 0.10 1.65 5.27 -51.93 -0.27 1.37 16 5 C -0.15 -2.29 3.86 -26.73 -0.10 -2.40 16 6 C 0.45 6.34 3.14 37.16 0.12 6.46 16 7 F -0.18 -2.53 13.74 2.25 0.03 -2.49 16 8 F -0.19 -2.64 17.32 2.25 0.04 -2.60 16 9 F -0.19 -2.67 16.49 2.25 0.04 -2.63 16 10 C 0.47 10.81 5.70 -10.98 -0.06 10.74 16 11 O -0.58 -15.04 15.81 5.55 0.09 -14.95 16 12 N -0.42 -10.08 2.91 -107.73 -0.31 -10.39 16 13 C -0.31 -8.33 8.64 -14.93 -0.13 -8.46 16 14 H 0.09 2.57 7.55 -52.49 -0.40 2.18 16 15 C 0.04 1.14 5.14 -17.47 -0.09 1.05 16 16 N -0.87 -21.97 10.50 55.50 0.58 -21.39 16 17 Si 0.92 20.33 29.56 -169.99 -5.02 15.31 16 18 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 19 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 20 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 21 C 0.13 2.78 2.66 -67.93 -0.18 2.60 16 22 C -0.13 -2.64 8.66 -26.70 -0.23 -2.88 16 23 C -0.23 -4.09 8.54 -26.70 -0.23 -4.32 16 24 H 0.06 1.27 7.21 -51.93 -0.37 0.89 16 25 H 0.05 0.73 6.08 -51.93 -0.32 0.42 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.08 5.81 -51.93 -0.30 0.78 16 28 H 0.08 1.39 5.88 -51.93 -0.31 1.09 16 29 H 0.12 1.82 6.07 -51.93 -0.32 1.51 16 30 H 0.11 1.71 8.05 -51.93 -0.42 1.29 16 31 H 0.27 6.51 8.32 -40.82 -0.34 6.17 16 32 H 0.11 2.28 6.71 -51.93 -0.35 1.93 16 33 H 0.09 1.95 7.96 -51.93 -0.41 1.53 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 35 H 0.09 1.32 8.14 -51.92 -0.42 0.90 16 36 H 0.08 1.49 7.96 -51.93 -0.41 1.07 16 LS Contribution 296.99 15.07 4.48 4.48 Total: -1.00 -27.53 296.99 -5.23 -32.75 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.28 Total: 5.47 kcal Atomic # 6 Polarization: -2.69 SS G_CDS: -0.86 Total: -3.56 kcal Atomic # 7 Polarization: -32.05 SS G_CDS: 0.27 Total: -31.78 kcal Atomic # 8 Polarization: -15.04 SS G_CDS: 0.09 Total: -14.95 kcal Atomic # 9 Polarization: -7.83 SS G_CDS: 0.11 Total: -7.72 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 4.48 Total: 4.48 kcal Total: -27.53 -5.23 -32.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448789004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.581 kcal (2) G-P(sol) polarization free energy of solvation -27.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds