Wall clock time and date at job start Tue Mar 31 2020 00:52:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53003 * 109.47263 * 2 1 4 4 H 1.08999 * 109.47041 * 185.34840 * 3 2 1 5 5 C 1.52997 * 109.46827 * 305.35007 * 3 2 1 6 6 C 1.52999 * 109.47332 * 293.04885 * 5 3 2 7 7 F 1.39904 * 109.46806 * 64.65945 * 6 5 3 8 8 F 1.39896 * 109.47750 * 184.65803 * 6 5 3 9 9 F 1.39901 * 109.47169 * 304.66562 * 6 5 3 10 10 C 1.50705 * 109.47003 * 65.34685 * 3 2 1 11 11 O 1.21287 * 120.00027 * 250.49625 * 10 3 2 12 12 N 1.34775 * 119.99625 * 70.49171 * 10 3 2 13 13 C 1.37101 * 119.99877 * 185.62706 * 12 10 3 14 14 H 1.08000 * 119.99890 * 326.46488 * 13 12 10 15 15 C 1.38946 * 119.99803 * 146.18059 * 13 12 10 16 16 N 1.31411 * 120.00365 * 3.22072 * 15 13 12 17 17 Si 1.86800 * 119.99775 * 183.21640 * 15 13 12 18 18 H 1.48504 * 109.47019 * 60.00716 * 17 15 13 19 19 H 1.48510 * 109.46988 * 180.02562 * 17 15 13 20 20 H 1.48493 * 109.47558 * 300.00378 * 17 15 13 21 21 C 1.46499 * 120.00531 * 5.63592 * 12 10 3 22 22 C 1.53000 * 117.50111 * 133.28919 * 21 12 10 23 23 C 1.53001 * 117.49677 * 64.63265 * 21 12 10 24 24 H 1.09001 * 109.47017 * 305.63491 * 1 2 3 25 25 H 1.09003 * 109.47601 * 65.63252 * 1 2 3 26 26 H 1.09004 * 109.47368 * 185.63838 * 1 2 3 27 27 H 1.09001 * 109.47098 * 240.00002 * 2 1 3 28 28 H 1.09004 * 109.47405 * 120.00146 * 2 1 3 29 29 H 1.08994 * 109.47598 * 53.05261 * 5 3 2 30 30 H 1.09006 * 109.46770 * 173.05466 * 5 3 2 31 31 H 0.96990 * 120.00296 * 184.99790 * 16 15 13 32 32 H 1.08995 * 115.54785 * 278.96694 * 21 12 10 33 33 H 1.09000 * 117.49932 * 0.02562 * 22 21 12 34 34 H 1.09004 * 117.49512 * 145.02211 * 22 21 12 35 35 H 1.09007 * 117.49966 * 214.98194 * 23 21 12 36 36 H 1.08996 * 117.50175 * 359.97438 * 23 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1258 1.4440 -0.0958 5 6 1.4231 2.2015 -1.1765 6 6 1.9580 1.6279 -2.4902 7 9 1.5291 0.3035 -2.6297 8 9 1.4775 2.3888 -3.5613 9 9 3.3564 1.6666 -2.4809 10 6 1.6487 2.1137 1.2914 11 8 0.7990 2.9792 1.2918 12 7 2.2428 1.7520 2.4457 13 6 1.8079 2.2780 3.6347 14 1 1.4318 3.2898 3.6722 15 6 1.8454 1.5075 4.7904 16 7 2.3561 0.2972 4.7569 17 14 1.1698 2.1922 6.3917 18 1 -0.2696 2.5163 6.2233 19 1 1.3273 1.1810 7.4679 20 1 1.9150 3.4235 6.7572 21 6 3.3536 0.7970 2.4301 22 6 4.5958 1.1445 3.2529 23 6 4.6426 1.2240 1.7250 24 1 -0.3633 0.5987 0.8352 25 1 -0.3634 0.4240 -0.9361 26 1 -0.3634 -1.0227 0.1010 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 0.3387 2.0957 -1.1488 30 1 1.6872 3.2568 -1.1067 31 1 2.3170 -0.2677 5.5444 32 1 3.0696 -0.2534 2.3667 33 1 4.5865 2.0836 3.8063 34 1 5.1292 0.3226 3.7306 35 1 5.2068 0.4545 1.1981 36 1 4.6640 2.2154 1.2725 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448789004.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:30 Heat of formation + Delta-G solvation = -180.837636 kcal Electronic energy + Delta-G solvation = -23655.771136 eV Core-core repulsion = 19725.309772 eV Total energy + Delta-G solvation = -3930.461363 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -51.09154 -48.57837 -48.52739 -40.99478 -38.07125 -36.51855 -34.80922 -32.99798 -31.55644 -28.48446 -26.45985 -24.41402 -23.68677 -22.94130 -22.31212 -20.25464 -19.52443 -19.33169 -18.72734 -18.07595 -17.19223 -16.91608 -16.45884 -16.38228 -15.79190 -15.55260 -15.40691 -15.06166 -14.89818 -14.74897 -14.63012 -14.52171 -14.07596 -13.88537 -13.58107 -13.15649 -13.13178 -12.97932 -12.59078 -12.52011 -12.23555 -12.13626 -12.10296 -11.84549 -11.67856 -11.34545 -11.02108 -10.63046 -10.16496 -9.52782 -8.25557 -5.98197 1.39034 1.41205 1.48781 1.78882 2.04552 2.28586 2.75150 2.98160 3.05572 3.14061 3.19535 3.27136 3.75081 3.90894 3.99970 4.24743 4.25626 4.36452 4.44797 4.54094 4.58874 4.67854 4.85844 4.88242 4.95008 5.12115 5.18827 5.26473 5.38762 5.44110 5.47903 5.55685 6.19118 6.57676 7.22086 7.51512 8.07648 8.76875 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027090 B = 0.005851 C = 0.005497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.328118 B = 4784.751591 C = 5092.236073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.095 4.095 4 H 0.110 0.890 5 C -0.146 4.146 6 C 0.465 3.535 7 F -0.176 7.176 8 F -0.186 7.186 9 F -0.183 7.183 10 C 0.467 3.533 11 O -0.624 6.624 12 N -0.431 5.431 13 C -0.345 4.345 14 H 0.063 0.937 15 C 0.017 3.983 16 N -0.877 5.877 17 Si 0.971 3.029 18 H -0.282 1.282 19 H -0.271 1.271 20 H -0.272 1.272 21 C 0.112 3.888 22 C -0.140 4.140 23 C -0.192 4.192 24 H 0.025 0.975 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.065 0.935 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.270 0.730 32 H 0.100 0.900 33 H 0.064 0.936 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.219 -3.160 -10.728 11.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.159 4.159 3 C -0.116 4.116 4 H 0.128 0.872 5 C -0.184 4.184 6 C 0.411 3.589 7 F -0.158 7.158 8 F -0.167 7.167 9 F -0.165 7.165 10 C 0.256 3.744 11 O -0.511 6.511 12 N -0.149 5.149 13 C -0.473 4.473 14 H 0.081 0.919 15 C -0.187 4.187 16 N -0.513 5.513 17 Si 0.796 3.204 18 H -0.208 1.208 19 H -0.196 1.196 20 H -0.197 1.197 21 C 0.007 3.993 22 C -0.177 4.177 23 C -0.230 4.230 24 H 0.044 0.956 25 H 0.085 0.915 26 H 0.087 0.913 27 H 0.120 0.880 28 H 0.083 0.917 29 H 0.134 0.866 30 H 0.126 0.874 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.143 0.857 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.939 -2.908 -10.561 11.341 hybrid contribution -0.410 0.408 1.071 1.218 sum 2.529 -2.501 -9.489 10.134 Atomic orbital electron populations 1.21773 0.95685 1.01893 1.01132 1.21744 0.96711 0.93366 1.04072 1.21192 1.02670 0.96672 0.91096 0.87179 1.22676 1.04664 1.02450 0.88652 1.20363 0.75615 0.76057 0.86910 1.93127 1.89599 1.36806 1.96233 1.93171 1.88069 1.75913 1.59558 1.93168 1.30237 1.96266 1.96827 1.20504 0.82757 0.85172 0.85932 1.90488 1.37115 1.36114 1.87393 1.43118 1.27874 1.39012 1.04897 1.19308 1.43397 0.98579 0.85997 0.91941 1.25871 0.95759 0.95651 1.01395 1.69919 1.41820 1.08312 1.31291 0.85343 0.78527 0.78268 0.78266 1.20792 1.19559 1.19684 1.21148 0.81412 0.92249 1.04445 1.22577 1.00839 1.01688 0.92644 1.23642 1.00972 1.02961 0.95469 0.95605 0.91499 0.91323 0.87989 0.91672 0.86609 0.87388 0.91969 0.88278 0.91771 0.88633 0.85714 0.89903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.67 9.01 71.98 0.65 -4.02 16 2 C -0.12 -3.77 4.98 30.59 0.15 -3.61 16 3 C -0.09 -3.23 1.70 -11.54 -0.02 -3.25 16 4 H 0.11 3.45 5.27 -2.39 -0.01 3.44 16 5 C -0.15 -4.33 3.86 30.59 0.12 -4.21 16 6 C 0.46 11.80 3.14 71.98 0.23 12.03 16 7 F -0.18 -4.33 13.74 44.97 0.62 -3.71 16 8 F -0.19 -4.68 17.32 44.97 0.78 -3.90 16 9 F -0.18 -4.69 16.49 44.97 0.74 -3.95 16 10 C 0.47 21.58 5.70 87.66 0.50 22.08 16 11 O -0.62 -33.32 15.81 -3.05 -0.05 -33.37 16 12 N -0.43 -21.16 2.91 -613.14 -1.79 -22.95 16 13 C -0.34 -19.01 8.64 84.04 0.73 -18.28 16 14 H 0.06 3.72 7.55 -2.91 -0.02 3.69 16 15 C 0.02 0.88 5.14 84.93 0.44 1.32 16 16 N -0.88 -44.20 10.50 21.66 0.23 -43.97 16 17 Si 0.97 42.18 29.56 68.60 2.03 44.20 16 18 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 C 0.11 4.66 2.66 44.99 0.12 4.78 16 22 C -0.14 -5.50 8.66 30.62 0.27 -5.23 16 23 C -0.19 -6.35 8.54 30.62 0.26 -6.09 16 24 H 0.02 1.00 7.21 -2.39 -0.02 0.98 16 25 H 0.07 1.85 6.08 -2.39 -0.01 1.84 16 26 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 27 H 0.10 2.62 5.81 -2.39 -0.01 2.61 16 28 H 0.06 2.22 5.88 -2.39 -0.01 2.21 16 29 H 0.12 3.49 6.07 -2.39 -0.01 3.47 16 30 H 0.11 3.27 8.05 -2.38 -0.02 3.25 16 31 H 0.27 13.01 8.32 -92.72 -0.77 12.23 16 32 H 0.10 4.23 6.71 -2.39 -0.02 4.22 16 33 H 0.06 2.83 7.96 -2.39 -0.02 2.82 16 34 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 35 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 36 H 0.08 2.77 7.96 -2.39 -0.02 2.75 16 Total: -1.00 -60.33 296.99 7.10 -53.22 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: 1.11 Total: 18.90 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: 3.43 Total: -4.48 kcal Atomic # 7 Polarization: -65.35 SS G_CDS: -1.56 Total: -66.91 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -0.05 Total: -33.37 kcal Atomic # 9 Polarization: -13.71 SS G_CDS: 2.14 Total: -11.57 kcal Atomic # 14 Polarization: 42.18 SS G_CDS: 2.03 Total: 44.20 kcal Total: -60.33 7.10 -53.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448789004.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.614 kcal (2) G-P(sol) polarization free energy of solvation -60.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -187.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -180.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds