Wall clock time and date at job start Tue Mar 31 2020 01:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.00085 * 2 1 4 4 C 1.54332 * 109.99218 * 238.96101 * 2 1 3 5 5 H 1.08999 * 110.51580 * 336.97549 * 4 2 1 6 6 C 1.53005 * 110.85032 * 100.19854 * 4 2 1 7 7 C 1.53002 * 109.46958 * 180.14650 * 6 4 2 8 8 F 1.39894 * 109.46943 * 60.00038 * 7 6 4 9 9 F 1.39904 * 109.46783 * 179.97438 * 7 6 4 10 10 F 1.39897 * 109.47153 * 300.00083 * 7 6 4 11 11 C 1.55164 * 103.01966 * 218.66630 * 4 2 1 12 12 C 1.54902 * 101.58139 * 35.30723 * 11 4 2 13 13 H 1.08996 * 110.37024 * 204.15214 * 12 11 4 14 14 C 1.52999 * 110.46314 * 81.87842 * 12 11 4 15 15 N 1.47022 * 109.88230 * 121.09424 * 2 1 3 16 16 C 1.34778 * 125.64832 * 298.39686 * 15 2 1 17 17 O 1.21691 * 120.00128 * 359.71118 * 16 15 2 18 18 C 1.46372 * 120.00003 * 179.71596 * 16 15 2 19 19 H 1.08001 * 120.00090 * 6.80164 * 18 16 15 20 20 C 1.40050 * 119.99932 * 186.80072 * 18 16 15 21 21 N 1.30678 * 120.00051 * 6.79139 * 20 18 16 22 22 Si 1.86801 * 120.00252 * 186.79307 * 20 18 16 23 23 H 1.48504 * 109.47090 * 84.98566 * 22 20 18 24 24 H 1.48497 * 109.47443 * 204.98952 * 22 20 18 25 25 H 1.48510 * 109.46875 * 324.98988 * 22 20 18 26 26 H 1.09004 * 109.47773 * 300.35968 * 1 2 3 27 27 H 1.09006 * 109.47594 * 60.35994 * 1 2 3 28 28 H 1.09004 * 109.47529 * 180.35875 * 1 2 3 29 29 H 1.08994 * 109.46796 * 300.14388 * 6 4 2 30 30 H 1.08996 * 109.47056 * 60.14524 * 6 4 2 31 31 H 1.08995 * 111.00192 * 277.23034 * 11 4 2 32 32 H 1.08996 * 111.03186 * 153.39883 * 11 4 2 33 33 H 1.09007 * 109.46930 * 303.07892 * 14 12 11 34 34 H 1.09001 * 109.47560 * 63.07485 * 14 12 11 35 35 H 1.09000 * 109.47476 * 183.08726 * 14 12 11 36 36 H 0.96998 * 119.99660 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3053 -1.4407 -1.6196 6 6 2.4817 0.2387 -2.3326 7 6 2.9951 -0.5348 -3.5488 8 9 1.9787 -1.3620 -4.0383 9 9 3.3823 0.3673 -4.5456 10 9 4.0931 -1.3167 -3.1746 11 6 3.2863 -1.5184 -0.6913 12 6 2.8099 -1.8825 0.7369 13 1 3.6654 -2.0412 1.3933 14 6 1.9266 -3.1313 0.7040 15 7 2.0299 -0.7140 1.1839 16 6 1.8073 -0.3620 2.4657 17 8 1.1452 0.6272 2.7188 18 6 2.3619 -1.1694 3.5534 19 1 3.0388 -1.9814 3.3322 20 6 2.0148 -0.8890 4.8809 21 7 1.0966 0.0035 5.1416 22 14 2.8643 -1.7908 6.2789 23 1 4.1349 -1.0992 6.6144 24 1 1.9782 -1.8038 7.4705 25 1 3.1553 -3.1865 5.8632 26 1 -0.3635 0.5194 0.8867 27 1 -0.3634 0.5082 -0.8932 28 1 -0.3634 -1.0276 0.0064 29 1 1.6261 0.8478 -2.6241 30 1 3.2735 0.8832 -1.9511 31 1 4.1669 -0.8769 -0.6578 32 1 3.4813 -2.4155 -1.2788 33 1 1.0837 -2.9626 0.0336 34 1 2.5102 -3.9800 0.3473 35 1 1.5562 -3.3410 1.7074 36 1 0.8560 0.1974 6.0610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452658610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:52 Heat of formation + Delta-G solvation = -205.895333 kcal Electronic energy + Delta-G solvation = -23145.663311 eV Core-core repulsion = 19214.115364 eV Total energy + Delta-G solvation = -3931.547947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.13139 -47.64007 -47.58735 -39.33111 -36.09160 -33.22984 -32.60924 -31.29536 -29.09355 -27.50814 -26.09893 -24.31148 -22.61482 -21.45857 -20.09804 -18.98075 -18.56124 -18.24059 -17.28603 -16.36445 -15.66113 -15.08814 -14.55270 -14.43347 -14.33273 -14.05839 -13.85943 -13.76101 -13.67768 -13.42513 -13.25444 -12.99473 -12.60659 -12.14790 -12.05668 -11.89612 -11.81400 -11.54080 -11.41477 -11.19483 -10.84112 -10.80371 -10.46849 -10.36043 -10.20889 -10.16786 -9.86449 -8.85842 -7.61562 -7.25411 -6.24544 -4.64533 2.75366 3.13005 3.19860 3.21970 3.76694 3.94866 4.03787 4.08548 4.46499 4.54220 4.76119 4.88893 5.02586 5.26775 5.41513 5.51377 5.67939 5.74155 5.78702 5.92221 5.98251 6.05877 6.15599 6.23393 6.31390 6.39244 6.62379 6.69783 6.89224 6.96317 7.42242 7.43001 8.10778 8.41111 9.00758 9.48366 10.55686 10.74312 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.032854 B = 0.004731 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.049408 B = 5917.229749 C = 6263.914680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.154 3.846 3 H 0.059 0.941 4 C -0.103 4.103 5 H 0.092 0.908 6 C -0.156 4.156 7 C 0.453 3.547 8 F -0.185 7.185 9 F -0.190 7.190 10 F -0.180 7.180 11 C -0.128 4.128 12 C 0.142 3.858 13 H 0.079 0.921 14 C -0.157 4.157 15 N -0.634 5.634 16 C 0.577 3.423 17 O -0.576 6.576 18 C -0.540 4.540 19 H 0.070 0.930 20 C 0.090 3.910 21 N -0.770 5.770 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.265 1.265 26 H 0.075 0.925 27 H 0.045 0.955 28 H 0.049 0.951 29 H 0.109 0.891 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.066 0.934 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.578 -3.251 -14.514 15.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.077 0.923 4 C -0.122 4.122 5 H 0.110 0.890 6 C -0.194 4.194 7 C 0.399 3.601 8 F -0.167 7.167 9 F -0.171 7.171 10 F -0.162 7.162 11 C -0.166 4.166 12 C 0.037 3.963 13 H 0.097 0.903 14 C -0.216 4.216 15 N -0.373 5.373 16 C 0.384 3.616 17 O -0.458 6.458 18 C -0.576 4.576 19 H 0.088 0.912 20 C -0.130 4.130 21 N -0.399 5.399 22 Si 0.730 3.270 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.190 1.190 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.069 0.931 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.096 0.904 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.085 0.915 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.085 -2.577 -14.144 14.704 hybrid contribution 0.490 -0.640 0.385 0.893 sum 3.575 -3.217 -13.759 14.575 Atomic orbital electron populations 1.22147 0.95876 1.01620 1.01962 1.21021 0.93807 0.95491 0.84787 0.92274 1.22330 0.99070 0.96653 0.94138 0.88993 1.22907 1.04931 0.99309 0.92259 1.20671 0.75669 0.78446 0.85351 1.93170 1.60020 1.74011 1.89476 1.93173 1.91570 1.67565 1.64831 1.93184 1.55627 1.76266 1.91109 1.23066 0.96670 1.00233 0.96676 1.21447 0.94259 0.87320 0.93300 0.90289 1.22141 0.99743 0.96991 1.02691 1.48855 1.56417 1.27413 1.04660 1.17975 0.79943 0.84947 0.78780 1.90591 1.44011 1.29443 1.81804 1.20867 1.29752 1.17228 0.89782 0.91233 1.25692 0.93616 0.94151 0.99556 1.69983 1.23523 1.26149 1.20210 0.86421 0.79739 0.80428 0.80390 1.19629 1.20549 1.18955 0.90554 0.93628 0.93148 0.87214 0.87063 0.90743 0.90393 0.93330 0.93165 0.91488 0.92042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.11 37.15 0.34 -2.49 16 2 C 0.15 2.76 3.06 -66.95 -0.20 2.55 16 3 H 0.06 1.10 7.82 -51.93 -0.41 0.70 16 4 C -0.10 -1.39 2.02 -88.77 -0.18 -1.57 16 5 H 0.09 1.21 7.08 -51.93 -0.37 0.84 16 6 C -0.16 -1.67 4.73 -26.73 -0.13 -1.80 16 7 C 0.45 5.02 3.16 37.16 0.12 5.14 16 8 F -0.19 -2.19 16.79 2.25 0.04 -2.15 16 9 F -0.19 -2.15 17.32 2.25 0.04 -2.11 16 10 F -0.18 -2.14 14.69 2.25 0.03 -2.10 16 11 C -0.13 -1.79 4.40 -24.58 -0.11 -1.90 16 12 C 0.14 2.51 3.00 -66.42 -0.20 2.31 16 13 H 0.08 1.46 7.06 -51.93 -0.37 1.10 16 14 C -0.16 -2.56 9.51 37.16 0.35 -2.21 16 15 N -0.63 -13.76 2.71 -157.24 -0.43 -14.19 16 16 C 0.58 15.92 7.54 -12.99 -0.10 15.82 16 17 O -0.58 -18.06 14.16 5.20 0.07 -17.98 16 18 C -0.54 -14.82 8.99 -35.63 -0.32 -15.14 16 19 H 0.07 1.77 6.60 -52.49 -0.35 1.42 16 20 C 0.09 2.45 5.48 -17.36 -0.10 2.35 16 21 N -0.77 -22.65 11.91 55.55 0.66 -21.99 16 22 Si 0.91 19.86 29.56 -169.99 -5.03 14.84 16 23 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 25 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 26 H 0.08 1.68 6.89 -51.93 -0.36 1.32 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 30 H 0.11 1.12 8.10 -51.93 -0.42 0.70 16 31 H 0.07 1.01 7.99 -51.93 -0.41 0.60 16 32 H 0.08 0.97 7.22 -51.93 -0.37 0.60 16 33 H 0.05 0.76 7.43 -51.93 -0.39 0.38 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.27 7.21 8.29 -40.82 -0.34 6.87 16 LS Contribution 304.65 15.07 4.59 4.59 Total: -1.00 -32.19 304.65 -5.23 -37.42 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -4.69 Total: 0.59 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.52 Total: 3.08 kcal Atomic # 7 Polarization: -36.41 SS G_CDS: 0.23 Total: -36.18 kcal Atomic # 8 Polarization: -18.06 SS G_CDS: 0.07 Total: -17.98 kcal Atomic # 9 Polarization: -6.47 SS G_CDS: 0.11 Total: -6.36 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.03 Total: 14.84 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -32.19 -5.23 -37.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452658610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -168.474 kcal (2) G-P(sol) polarization free energy of solvation -32.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -200.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.421 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds