Wall clock time and date at job start Tue Mar 31 2020 01:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.00085 * 2 1 4 4 C 1.54332 * 109.99218 * 238.96101 * 2 1 3 5 5 H 1.08999 * 110.51580 * 336.97549 * 4 2 1 6 6 C 1.53005 * 110.85032 * 100.19854 * 4 2 1 7 7 C 1.53002 * 109.46958 * 180.14650 * 6 4 2 8 8 F 1.39894 * 109.46943 * 60.00038 * 7 6 4 9 9 F 1.39904 * 109.46783 * 179.97438 * 7 6 4 10 10 F 1.39897 * 109.47153 * 300.00083 * 7 6 4 11 11 C 1.55164 * 103.01966 * 218.66630 * 4 2 1 12 12 C 1.54902 * 101.58139 * 35.30723 * 11 4 2 13 13 H 1.08996 * 110.37024 * 204.15214 * 12 11 4 14 14 C 1.52999 * 110.46314 * 81.87842 * 12 11 4 15 15 N 1.47022 * 109.88230 * 121.09424 * 2 1 3 16 16 C 1.34778 * 125.64832 * 298.39686 * 15 2 1 17 17 O 1.21691 * 120.00128 * 359.71118 * 16 15 2 18 18 C 1.46372 * 120.00003 * 179.71596 * 16 15 2 19 19 H 1.08001 * 120.00090 * 6.80164 * 18 16 15 20 20 C 1.40050 * 119.99932 * 186.80072 * 18 16 15 21 21 N 1.30678 * 120.00051 * 6.79139 * 20 18 16 22 22 Si 1.86801 * 120.00252 * 186.79307 * 20 18 16 23 23 H 1.48504 * 109.47090 * 84.98566 * 22 20 18 24 24 H 1.48497 * 109.47443 * 204.98952 * 22 20 18 25 25 H 1.48510 * 109.46875 * 324.98988 * 22 20 18 26 26 H 1.09004 * 109.47773 * 300.35968 * 1 2 3 27 27 H 1.09006 * 109.47594 * 60.35994 * 1 2 3 28 28 H 1.09004 * 109.47529 * 180.35875 * 1 2 3 29 29 H 1.08994 * 109.46796 * 300.14388 * 6 4 2 30 30 H 1.08996 * 109.47056 * 60.14524 * 6 4 2 31 31 H 1.08995 * 111.00192 * 277.23034 * 11 4 2 32 32 H 1.08996 * 111.03186 * 153.39883 * 11 4 2 33 33 H 1.09007 * 109.46930 * 303.07892 * 14 12 11 34 34 H 1.09001 * 109.47560 * 63.07485 * 14 12 11 35 35 H 1.09000 * 109.47476 * 183.08726 * 14 12 11 36 36 H 0.96998 * 119.99660 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0576 -0.7478 -1.2427 5 1 1.3053 -1.4407 -1.6196 6 6 2.4817 0.2387 -2.3326 7 6 2.9951 -0.5348 -3.5488 8 9 1.9787 -1.3620 -4.0383 9 9 3.3823 0.3673 -4.5456 10 9 4.0931 -1.3167 -3.1746 11 6 3.2863 -1.5184 -0.6913 12 6 2.8099 -1.8825 0.7369 13 1 3.6654 -2.0412 1.3933 14 6 1.9266 -3.1313 0.7040 15 7 2.0299 -0.7140 1.1839 16 6 1.8073 -0.3620 2.4657 17 8 1.1452 0.6272 2.7188 18 6 2.3619 -1.1694 3.5534 19 1 3.0388 -1.9814 3.3322 20 6 2.0148 -0.8890 4.8809 21 7 1.0966 0.0035 5.1416 22 14 2.8643 -1.7908 6.2789 23 1 4.1349 -1.0992 6.6144 24 1 1.9782 -1.8038 7.4705 25 1 3.1553 -3.1865 5.8632 26 1 -0.3635 0.5194 0.8867 27 1 -0.3634 0.5082 -0.8932 28 1 -0.3634 -1.0276 0.0064 29 1 1.6261 0.8478 -2.6241 30 1 3.2735 0.8832 -1.9511 31 1 4.1669 -0.8769 -0.6578 32 1 3.4813 -2.4155 -1.2788 33 1 1.0837 -2.9626 0.0336 34 1 2.5102 -3.9800 0.3473 35 1 1.5562 -3.3410 1.7074 36 1 0.8560 0.1974 6.0610 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452658610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:51 Heat of formation + Delta-G solvation = -226.007052 kcal Electronic energy + Delta-G solvation = -23146.535420 eV Core-core repulsion = 19214.115364 eV Total energy + Delta-G solvation = -3932.420056 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.00481 -48.51078 -48.46684 -40.83474 -38.01576 -34.67060 -34.53432 -32.78182 -30.62060 -28.79042 -28.06613 -25.44664 -23.96539 -22.91795 -21.42692 -20.59838 -19.43631 -19.19790 -18.57515 -17.93132 -17.52748 -16.46982 -16.04372 -15.48057 -15.44198 -15.27504 -14.91981 -14.87802 -14.72273 -14.70389 -14.58944 -14.47525 -14.13280 -13.64000 -13.37453 -13.19533 -13.19316 -13.04480 -12.86235 -12.73925 -12.50392 -12.44551 -12.18482 -11.91415 -11.62709 -11.50235 -11.27538 -10.90677 -9.75845 -9.05814 -8.30056 -6.79362 1.38850 1.40690 1.54242 1.87021 2.23320 2.48188 2.77304 2.91497 3.12677 3.19269 3.59554 3.65665 3.72940 3.89935 4.25895 4.31103 4.35321 4.44723 4.53825 4.56592 4.71296 4.75355 4.85817 4.93010 5.05447 5.13106 5.21903 5.29035 5.34748 5.44131 5.55040 5.76359 6.11404 6.50572 6.90369 7.54963 8.51068 8.70028 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.032854 B = 0.004731 C = 0.004469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.049408 B = 5917.229749 C = 6263.914680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.145 3.855 3 H 0.048 0.952 4 C -0.087 4.087 5 H 0.104 0.896 6 C -0.151 4.151 7 C 0.459 3.541 8 F -0.188 7.188 9 F -0.190 7.190 10 F -0.184 7.184 11 C -0.116 4.116 12 C 0.131 3.869 13 H 0.066 0.934 14 C -0.150 4.150 15 N -0.640 5.640 16 C 0.561 3.439 17 O -0.628 6.628 18 C -0.564 4.564 19 H 0.083 0.917 20 C 0.033 3.967 21 N -0.824 5.824 22 Si 0.990 3.010 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.249 1.249 26 H 0.025 0.975 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.054 0.946 34 H 0.084 0.916 35 H 0.034 0.966 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.912 -4.798 -16.179 17.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.041 3.959 3 H 0.066 0.934 4 C -0.106 4.106 5 H 0.122 0.878 6 C -0.189 4.189 7 C 0.405 3.595 8 F -0.169 7.169 9 F -0.171 7.171 10 F -0.165 7.165 11 C -0.154 4.154 12 C 0.027 3.973 13 H 0.084 0.916 14 C -0.208 4.208 15 N -0.377 5.377 16 C 0.368 3.632 17 O -0.516 6.516 18 C -0.601 4.601 19 H 0.101 0.899 20 C -0.182 4.182 21 N -0.454 5.454 22 Si 0.810 3.190 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.173 1.173 26 H 0.044 0.956 27 H 0.104 0.896 28 H 0.069 0.931 29 H 0.148 0.852 30 H 0.138 0.862 31 H 0.098 0.902 32 H 0.122 0.878 33 H 0.073 0.927 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.442 -4.160 -15.875 17.001 hybrid contribution 0.064 -0.147 0.811 0.827 sum 4.506 -4.306 -15.064 16.303 Atomic orbital electron populations 1.22049 0.96001 1.01351 1.01425 1.21244 0.93836 0.95390 0.85441 0.93379 1.22171 0.98916 0.96777 0.92707 0.87798 1.22874 1.06158 0.98718 0.91167 1.20562 0.75442 0.78214 0.85235 1.93173 1.60104 1.74102 1.89531 1.93179 1.91558 1.67578 1.64803 1.93180 1.55847 1.76387 1.91118 1.23037 0.96822 1.01496 0.94055 1.21742 0.93674 0.86518 0.95411 0.91574 1.22059 1.00145 0.97495 1.01100 1.48623 1.56121 1.28756 1.04203 1.18229 0.79544 0.84462 0.81000 1.90540 1.46053 1.31442 1.83517 1.21338 1.30238 1.17775 0.90742 0.89868 1.26881 0.93899 0.94753 1.02681 1.70150 1.25602 1.28431 1.21176 0.85142 0.78353 0.79417 0.76091 1.18787 1.19862 1.17261 0.95572 0.89640 0.93145 0.85229 0.86216 0.90189 0.87764 0.92703 0.89696 0.94691 0.91676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.39 9.11 71.98 0.66 -4.73 16 2 C 0.15 5.14 3.06 45.34 0.14 5.28 16 3 H 0.05 1.80 7.82 -2.39 -0.02 1.78 16 4 C -0.09 -2.10 2.02 -9.60 -0.02 -2.12 16 5 H 0.10 2.33 7.08 -2.39 -0.02 2.32 16 6 C -0.15 -2.73 4.73 30.60 0.14 -2.59 16 7 C 0.46 8.57 3.16 71.98 0.23 8.79 16 8 F -0.19 -3.74 16.79 44.97 0.75 -2.99 16 9 F -0.19 -3.70 17.32 44.97 0.78 -2.92 16 10 F -0.18 -3.68 14.69 44.97 0.66 -3.02 16 11 C -0.12 -2.90 4.40 31.99 0.14 -2.76 16 12 C 0.13 4.48 3.00 45.46 0.14 4.61 16 13 H 0.07 2.42 7.06 -2.39 -0.02 2.40 16 14 C -0.15 -4.65 9.51 71.98 0.68 -3.97 16 15 N -0.64 -28.22 2.71 -769.60 -2.09 -30.31 16 16 C 0.56 32.31 7.54 86.36 0.65 32.96 16 17 O -0.63 -41.70 14.16 -4.32 -0.06 -41.76 16 18 C -0.56 -31.88 8.99 24.83 0.22 -31.65 16 19 H 0.08 4.29 6.60 -2.91 -0.02 4.27 16 20 C 0.03 1.83 5.48 85.30 0.47 2.30 16 21 N -0.82 -50.48 11.91 21.84 0.26 -50.22 16 22 Si 0.99 41.17 29.56 68.60 2.03 43.20 16 23 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 24 H -0.27 -10.98 7.11 99.48 0.71 -10.28 16 25 H -0.25 -9.61 7.11 99.48 0.71 -8.90 16 26 H 0.03 1.18 6.89 -2.38 -0.02 1.17 16 27 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 28 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.13 1.89 8.14 -2.39 -0.02 1.88 16 30 H 0.12 2.04 8.10 -2.39 -0.02 2.02 16 31 H 0.08 1.94 7.99 -2.39 -0.02 1.92 16 32 H 0.10 2.14 7.22 -2.39 -0.02 2.12 16 33 H 0.05 1.61 7.43 -2.38 -0.02 1.60 16 34 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 35 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.27 15.24 8.29 -92.71 -0.77 14.47 16 Total: -1.00 -74.51 304.65 6.88 -67.63 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: 1.09 Total: 14.26 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: 3.45 Total: 6.12 kcal Atomic # 7 Polarization: -78.70 SS G_CDS: -1.83 Total: -80.53 kcal Atomic # 8 Polarization: -41.70 SS G_CDS: -0.06 Total: -41.76 kcal Atomic # 9 Polarization: -11.12 SS G_CDS: 2.19 Total: -8.93 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -74.51 6.88 -67.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452658610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.378 kcal (2) G-P(sol) polarization free energy of solvation -74.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.630 kcal (6) G-S(sol) free energy of system = (1) + (5) -226.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds