Wall clock time and date at job start Tue Mar 31 2020 00:27:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 112.94801 * 2 1 4 4 C 1.53000 * 109.46679 * 54.13828 * 3 2 1 5 5 F 1.39899 * 109.47368 * 56.11552 * 4 3 2 6 6 F 1.39902 * 109.47205 * 176.11751 * 4 3 2 7 7 F 1.39902 * 109.47094 * 296.11507 * 4 3 2 8 8 C 1.53952 * 113.73858 * 228.27431 * 2 1 3 9 9 N 1.47582 * 86.11310 * 222.04753 * 8 2 1 10 10 C 1.34782 * 134.48841 * 204.63797 * 9 8 2 11 11 O 1.21274 * 119.99837 * 179.97438 * 10 9 8 12 12 C 1.50695 * 119.99907 * 359.97438 * 10 9 8 13 13 C 1.53001 * 109.47075 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47568 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99576 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00304 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99931 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99752 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47088 * 90.00330 * 18 16 14 20 20 H 1.48509 * 109.46757 * 209.99977 * 18 16 14 21 21 H 1.48499 * 109.47329 * 329.99774 * 18 16 14 22 22 C 1.47575 * 91.01648 * 24.64026 * 9 8 2 23 23 H 1.09004 * 109.46577 * 280.06023 * 1 2 3 24 24 H 1.08989 * 109.47583 * 160.05998 * 1 2 3 25 25 H 1.09004 * 109.46839 * 40.05402 * 1 2 3 26 26 H 1.08994 * 109.47101 * 174.13288 * 3 2 1 27 27 H 1.09003 * 109.47312 * 294.13822 * 3 2 1 28 28 H 1.09000 * 113.76732 * 336.34397 * 8 2 1 29 29 H 1.08994 * 113.77302 * 107.74062 * 8 2 1 30 30 H 1.09000 * 109.47722 * 299.99859 * 12 10 9 31 31 H 1.08998 * 109.47139 * 60.00367 * 12 10 9 32 32 H 1.08997 * 109.47095 * 300.00095 * 13 12 10 33 33 H 1.09005 * 109.47138 * 60.00071 * 13 12 10 34 34 H 0.97003 * 119.99968 * 179.97438 * 17 16 14 35 35 H 1.09005 * 113.76850 * 221.05886 * 22 9 8 36 36 H 1.08997 * 113.77212 * 89.66231 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1265 1.4089 0.0000 4 6 1.5471 2.2079 1.1691 5 9 1.7851 1.5231 2.3655 6 9 2.1575 3.4657 1.2223 7 9 0.1688 2.3658 0.9884 8 6 2.1497 -0.9380 -1.0518 9 7 3.1104 -1.3200 0.0014 10 6 4.3622 -1.8196 0.0019 11 8 4.9256 -2.0427 1.0524 12 6 5.0617 -2.1009 -1.3029 13 6 6.4591 -2.6573 -1.0228 14 6 7.1590 -2.9381 -2.3276 15 1 6.6571 -2.7398 -3.2631 16 6 8.4396 -3.4490 -2.3271 17 7 9.0501 -3.6944 -3.4658 18 14 9.3074 -3.7925 -0.7089 19 1 9.0186 -5.1839 -0.2780 20 1 10.7720 -3.6233 -0.8871 21 1 8.8216 -2.8432 0.3246 22 6 2.1498 -0.9356 1.0537 23 1 -0.3632 0.1795 1.0119 24 1 -0.3634 -0.9659 -0.3504 25 1 -0.3633 0.7867 -0.6613 26 1 3.2095 1.3449 0.1050 27 1 1.8812 1.9074 -0.9378 28 1 1.4902 -1.7492 -1.3600 29 1 2.6048 -0.4152 -1.8929 30 1 4.4872 -2.8308 -1.8733 31 1 5.1469 -1.1776 -1.8759 32 1 7.0334 -1.9271 -0.4527 33 1 6.3744 -3.5806 -0.4495 34 1 9.9512 -4.0535 -3.4654 35 1 2.6050 -0.4108 1.8937 36 1 1.4902 -1.7460 1.3639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457109645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:23 Heat of formation + Delta-G solvation = -168.100064 kcal Electronic energy + Delta-G solvation = -22313.708425 eV Core-core repulsion = 18383.799404 eV Total energy + Delta-G solvation = -3929.909021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -50.37966 -47.86770 -47.83259 -40.64575 -38.01457 -33.50466 -33.14334 -31.30742 -29.71359 -27.52177 -26.53439 -25.21860 -23.93094 -21.03684 -19.80037 -18.86457 -18.75201 -18.55205 -17.29695 -17.08796 -16.22339 -15.96158 -15.39895 -15.00580 -14.78099 -14.49049 -14.26068 -14.18607 -14.04758 -13.98166 -13.89923 -13.48361 -13.09062 -12.70668 -12.60631 -12.39665 -12.21247 -12.14281 -11.67300 -11.60796 -11.33184 -10.98215 -10.74273 -10.18772 -10.07080 -9.79674 -9.25654 -9.18200 -8.64188 -8.52042 -6.04829 -4.03788 2.48328 2.86596 3.07175 3.36977 3.43332 3.43647 3.54690 3.64352 3.74867 3.99256 4.39120 4.48852 4.49656 4.62446 4.93710 5.06379 5.20218 5.26736 5.28433 5.30757 5.38029 5.45162 5.58054 5.67182 5.84181 5.91618 6.06423 6.12925 6.65514 7.33508 7.40507 7.74183 7.85083 8.46040 8.57580 8.97670 9.58252 11.07941 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030672 B = 0.003734 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.664193 B = 7495.889653 C = 7674.247029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.107 4.107 3 C -0.143 4.143 4 C 0.455 3.545 5 F -0.180 7.180 6 F -0.185 7.185 7 F -0.182 7.182 8 C 0.121 3.879 9 N -0.655 5.655 10 C 0.533 3.467 11 O -0.536 6.536 12 C -0.115 4.115 13 C 0.001 3.999 14 C -0.525 4.525 15 H 0.072 0.928 16 C 0.070 3.930 17 N -0.903 5.903 18 Si 0.877 3.123 19 H -0.276 1.276 20 H -0.288 1.288 21 H -0.261 1.261 22 C 0.108 3.892 23 H 0.066 0.934 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.024 0.976 33 H 0.019 0.981 34 H 0.263 0.737 35 H 0.087 0.913 36 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.268 11.723 6.348 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 C -0.181 4.181 4 C 0.401 3.599 5 F -0.162 7.162 6 F -0.167 7.167 7 F -0.164 7.164 8 C -0.002 4.002 9 N -0.393 5.393 10 C 0.325 3.675 11 O -0.411 6.411 12 C -0.154 4.154 13 C -0.037 4.037 14 C -0.563 4.563 15 H 0.091 0.909 16 C -0.131 4.131 17 N -0.542 5.542 18 Si 0.704 3.296 19 H -0.202 1.202 20 H -0.214 1.214 21 H -0.185 1.185 22 C -0.015 4.015 23 H 0.085 0.915 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.134 0.866 27 H 0.136 0.864 28 H 0.111 0.889 29 H 0.106 0.894 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.042 0.958 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.551 11.458 6.874 24.513 hybrid contribution 0.418 -0.138 0.883 0.987 sum -20.133 11.319 7.757 24.365 Atomic orbital electron populations 1.21923 0.91878 1.03121 1.03168 1.22370 0.96530 0.92774 0.99151 1.22664 1.03936 0.94788 0.96708 1.20540 0.76160 0.78431 0.84797 1.93176 1.94113 1.79210 1.49666 1.93200 1.83024 1.43673 1.96772 1.93180 1.32148 1.95744 1.95288 1.23231 0.89201 0.95508 0.92282 1.50214 1.13110 1.66687 1.09320 1.21342 0.78899 0.74290 0.92986 1.90672 1.64755 1.51174 1.34509 1.21625 0.99030 1.02501 0.92290 1.19391 0.90213 0.96465 0.97634 1.21088 0.99728 1.43247 0.92244 0.90942 1.24959 0.97222 0.94735 0.96227 1.69909 1.13745 1.45031 1.25513 0.86806 0.78506 0.79502 0.84815 1.20209 1.21382 1.18548 1.23340 0.89294 0.95761 0.93062 0.91503 0.91343 0.91285 0.86633 0.86427 0.88926 0.89378 0.89709 0.89733 0.95806 0.96285 0.92687 0.89434 0.89574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 7.70 37.16 0.29 -0.56 16 2 C -0.11 -0.83 0.95 -153.58 -0.15 -0.98 16 3 C -0.14 -1.08 4.82 -26.73 -0.13 -1.21 16 4 C 0.45 4.01 3.06 37.16 0.11 4.12 16 5 F -0.18 -1.87 14.88 2.25 0.03 -1.83 16 6 F -0.19 -1.85 17.32 2.25 0.04 -1.82 16 7 F -0.18 -1.53 14.31 2.25 0.03 -1.50 16 8 C 0.12 1.05 7.75 -2.97 -0.02 1.03 16 9 N -0.65 -8.82 3.45 -178.00 -0.61 -9.44 16 10 C 0.53 9.92 8.06 -10.99 -0.09 9.83 16 11 O -0.54 -12.27 16.71 5.56 0.09 -12.18 16 12 C -0.11 -2.23 5.39 -27.89 -0.15 -2.38 16 13 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 14 C -0.53 -15.00 9.66 -34.44 -0.33 -15.33 16 15 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 16 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 17 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 18 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 19 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 21 H -0.26 -6.74 6.54 56.52 0.37 -6.37 16 22 C 0.11 1.17 7.49 -2.98 -0.02 1.15 16 23 H 0.07 0.43 7.30 -51.93 -0.38 0.05 16 24 H 0.07 0.35 7.78 -51.94 -0.40 -0.06 16 25 H 0.07 0.36 7.58 -51.93 -0.39 -0.03 16 26 H 0.12 1.03 8.01 -51.93 -0.42 0.61 16 27 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.09 0.66 7.85 -51.93 -0.41 0.26 16 29 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 31 H 0.08 1.51 8.14 -51.93 -0.42 1.08 16 32 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 33 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 34 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 35 H 0.09 1.06 6.38 -51.93 -0.33 0.73 16 36 H 0.09 0.83 8.10 -51.93 -0.42 0.41 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -34.45 309.02 -5.13 -39.57 By element: Atomic # 1 Polarization: -1.06 SS G_CDS: -4.79 Total: -5.85 kcal Atomic # 6 Polarization: -1.75 SS G_CDS: -0.68 Total: -2.43 kcal Atomic # 7 Polarization: -36.75 SS G_CDS: 0.16 Total: -36.59 kcal Atomic # 8 Polarization: -12.27 SS G_CDS: 0.09 Total: -12.18 kcal Atomic # 9 Polarization: -5.25 SS G_CDS: 0.10 Total: -5.15 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.45 -5.13 -39.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457109645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.527 kcal (2) G-P(sol) polarization free energy of solvation -34.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds