Wall clock time and date at job start Tue Mar 31 2020 00:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 112.94801 * 2 1 4 4 C 1.53000 * 109.46679 * 54.13828 * 3 2 1 5 5 F 1.39899 * 109.47368 * 56.11552 * 4 3 2 6 6 F 1.39902 * 109.47205 * 176.11751 * 4 3 2 7 7 F 1.39902 * 109.47094 * 296.11507 * 4 3 2 8 8 C 1.53952 * 113.73858 * 228.27431 * 2 1 3 9 9 N 1.47582 * 86.11310 * 222.04753 * 8 2 1 10 10 C 1.34782 * 134.48841 * 204.63797 * 9 8 2 11 11 O 1.21274 * 119.99837 * 179.97438 * 10 9 8 12 12 C 1.50695 * 119.99907 * 359.97438 * 10 9 8 13 13 C 1.53001 * 109.47075 * 179.97438 * 12 10 9 14 14 C 1.50704 * 109.47568 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99576 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00304 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99931 * 179.97438 * 16 14 13 18 18 Si 1.86802 * 119.99752 * 359.97438 * 16 14 13 19 19 H 1.48496 * 109.47088 * 90.00330 * 18 16 14 20 20 H 1.48509 * 109.46757 * 209.99977 * 18 16 14 21 21 H 1.48499 * 109.47329 * 329.99774 * 18 16 14 22 22 C 1.47575 * 91.01648 * 24.64026 * 9 8 2 23 23 H 1.09004 * 109.46577 * 280.06023 * 1 2 3 24 24 H 1.08989 * 109.47583 * 160.05998 * 1 2 3 25 25 H 1.09004 * 109.46839 * 40.05402 * 1 2 3 26 26 H 1.08994 * 109.47101 * 174.13288 * 3 2 1 27 27 H 1.09003 * 109.47312 * 294.13822 * 3 2 1 28 28 H 1.09000 * 113.76732 * 336.34397 * 8 2 1 29 29 H 1.08994 * 113.77302 * 107.74062 * 8 2 1 30 30 H 1.09000 * 109.47722 * 299.99859 * 12 10 9 31 31 H 1.08998 * 109.47139 * 60.00367 * 12 10 9 32 32 H 1.08997 * 109.47095 * 300.00095 * 13 12 10 33 33 H 1.09005 * 109.47138 * 60.00071 * 13 12 10 34 34 H 0.97003 * 119.99968 * 179.97438 * 17 16 14 35 35 H 1.09005 * 113.76850 * 221.05886 * 22 9 8 36 36 H 1.08997 * 113.77212 * 89.66231 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1265 1.4089 0.0000 4 6 1.5471 2.2079 1.1691 5 9 1.7851 1.5231 2.3655 6 9 2.1575 3.4657 1.2223 7 9 0.1688 2.3658 0.9884 8 6 2.1497 -0.9380 -1.0518 9 7 3.1104 -1.3200 0.0014 10 6 4.3622 -1.8196 0.0019 11 8 4.9256 -2.0427 1.0524 12 6 5.0617 -2.1009 -1.3029 13 6 6.4591 -2.6573 -1.0228 14 6 7.1590 -2.9381 -2.3276 15 1 6.6571 -2.7398 -3.2631 16 6 8.4396 -3.4490 -2.3271 17 7 9.0501 -3.6944 -3.4658 18 14 9.3074 -3.7925 -0.7089 19 1 9.0186 -5.1839 -0.2780 20 1 10.7720 -3.6233 -0.8871 21 1 8.8216 -2.8432 0.3246 22 6 2.1498 -0.9356 1.0537 23 1 -0.3632 0.1795 1.0119 24 1 -0.3634 -0.9659 -0.3504 25 1 -0.3633 0.7867 -0.6613 26 1 3.2095 1.3449 0.1050 27 1 1.8812 1.9074 -0.9378 28 1 1.4902 -1.7492 -1.3600 29 1 2.6048 -0.4152 -1.8929 30 1 4.4872 -2.8308 -1.8733 31 1 5.1469 -1.1776 -1.8759 32 1 7.0334 -1.9271 -0.4527 33 1 6.3744 -3.5806 -0.4495 34 1 9.9512 -4.0535 -3.4654 35 1 2.6050 -0.4108 1.8937 36 1 1.4902 -1.7460 1.3639 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457109645.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:22 Heat of formation + Delta-G solvation = -190.532920 kcal Electronic energy + Delta-G solvation = -22314.681186 eV Core-core repulsion = 18383.799404 eV Total energy + Delta-G solvation = -3930.881782 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.09893 -48.60605 -48.55061 -41.61601 -39.34998 -35.56334 -34.07087 -33.24810 -30.46776 -28.85257 -27.32301 -26.71300 -24.67881 -22.87577 -20.70198 -19.96999 -19.50611 -19.29665 -19.08614 -17.92502 -17.62533 -17.03867 -16.61704 -16.26652 -15.85085 -15.70207 -15.39761 -15.03000 -14.91738 -14.83767 -14.73168 -14.68679 -14.35418 -14.17141 -13.86747 -13.46514 -13.17670 -13.03556 -12.89750 -12.84840 -12.31210 -12.22343 -12.12458 -11.98689 -11.79216 -11.45230 -11.40097 -10.79393 -10.68000 -9.73087 -8.32901 -6.35614 1.31487 1.33762 1.48732 1.62198 1.80315 1.86286 2.33627 2.74613 2.96670 3.02862 3.08083 3.26534 3.59719 3.73067 3.97445 4.02060 4.32334 4.43431 4.46933 4.51555 4.54912 4.63743 4.67078 4.82420 4.92522 4.97706 5.04472 5.11673 5.32736 5.40612 5.41403 5.58991 6.22131 6.64884 6.71299 7.18328 7.30013 8.82656 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.030672 B = 0.003734 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.664193 B = 7495.889653 C = 7674.247029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.088 4.088 3 C -0.142 4.142 4 C 0.454 3.546 5 F -0.193 7.193 6 F -0.194 7.194 7 F -0.177 7.177 8 C 0.119 3.881 9 N -0.654 5.654 10 C 0.532 3.468 11 O -0.593 6.593 12 C -0.107 4.107 13 C 0.005 3.995 14 C -0.528 4.528 15 H 0.053 0.947 16 C 0.017 3.983 17 N -0.942 5.942 18 Si 0.935 3.065 19 H -0.269 1.269 20 H -0.276 1.276 21 H -0.265 1.265 22 C 0.098 3.902 23 H 0.061 0.939 24 H 0.082 0.918 25 H 0.082 0.918 26 H 0.100 0.900 27 H 0.148 0.852 28 H 0.119 0.881 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.008 0.992 33 H 0.006 0.994 34 H 0.268 0.732 35 H 0.070 0.930 36 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.323 12.284 6.164 27.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.089 4.089 3 C -0.180 4.180 4 C 0.400 3.600 5 F -0.174 7.174 6 F -0.175 7.175 7 F -0.159 7.159 8 C -0.002 4.002 9 N -0.389 5.389 10 C 0.324 3.676 11 O -0.473 6.473 12 C -0.147 4.147 13 C -0.033 4.033 14 C -0.566 4.566 15 H 0.071 0.929 16 C -0.181 4.181 17 N -0.582 5.582 18 Si 0.760 3.240 19 H -0.194 1.194 20 H -0.202 1.202 21 H -0.189 1.189 22 C -0.024 4.024 23 H 0.080 0.920 24 H 0.101 0.899 25 H 0.101 0.899 26 H 0.119 0.881 27 H 0.166 0.834 28 H 0.137 0.863 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.120 0.880 32 H 0.026 0.974 33 H 0.024 0.976 34 H 0.077 0.923 35 H 0.088 0.912 36 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -22.675 12.045 6.664 26.526 hybrid contribution 0.933 -0.252 0.897 1.319 sum -21.742 11.793 7.561 25.864 Atomic orbital electron populations 1.21920 0.89747 1.04578 1.03384 1.22233 0.97848 0.91969 0.96866 1.22734 1.02925 0.94845 0.97468 1.20730 0.76362 0.78159 0.84726 1.93158 1.94221 1.79424 1.50608 1.93184 1.83240 1.44308 1.96798 1.93189 1.31747 1.95714 1.95212 1.23660 0.88053 0.96477 0.91995 1.50202 1.12184 1.64068 1.12472 1.20975 0.80556 0.74565 0.91544 1.90641 1.66721 1.54152 1.35821 1.21411 0.96273 1.03444 0.93523 1.19233 0.93197 0.95696 0.95220 1.21394 0.99855 1.42343 0.92985 0.92897 1.25748 0.98240 0.94880 0.99231 1.70011 1.14419 1.46342 1.27440 0.85882 0.77890 0.79461 0.80798 1.19376 1.20175 1.18917 1.23642 0.88742 0.97039 0.93015 0.91961 0.89864 0.89877 0.88121 0.83370 0.86325 0.87731 0.88134 0.88025 0.97394 0.97582 0.92325 0.91160 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 7.70 71.98 0.55 -0.55 16 2 C -0.09 -1.10 0.95 -51.52 -0.05 -1.15 16 3 C -0.14 -1.79 4.82 30.59 0.15 -1.64 16 4 C 0.45 7.23 3.06 71.98 0.22 7.45 16 5 F -0.19 -3.85 14.88 44.97 0.67 -3.18 16 6 F -0.19 -3.65 17.32 44.97 0.78 -2.87 16 7 F -0.18 -2.54 14.31 44.97 0.64 -1.89 16 8 C 0.12 1.64 7.75 86.48 0.67 2.31 16 9 N -0.65 -16.40 3.45 -835.46 -2.89 -19.29 16 10 C 0.53 19.48 8.06 87.65 0.71 20.19 16 11 O -0.59 -27.59 16.71 -3.01 -0.05 -27.64 16 12 C -0.11 -4.07 5.39 29.85 0.16 -3.90 16 13 C 0.00 0.23 3.33 29.85 0.10 0.33 16 14 C -0.53 -30.41 9.66 25.60 0.25 -30.16 16 15 H 0.05 3.18 7.99 -2.91 -0.02 3.16 16 16 C 0.02 1.01 5.47 84.65 0.46 1.47 16 17 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 18 Si 0.93 47.06 27.47 68.60 1.88 48.94 16 19 H -0.27 -13.09 7.11 99.48 0.71 -12.39 16 20 H -0.28 -13.30 7.11 99.48 0.71 -12.59 16 21 H -0.26 -13.38 6.54 99.48 0.65 -12.73 16 22 C 0.10 1.95 7.49 86.48 0.65 2.59 16 23 H 0.06 0.60 7.30 -2.38 -0.02 0.58 16 24 H 0.08 0.46 7.78 -2.39 -0.02 0.44 16 25 H 0.08 0.49 7.58 -2.38 -0.02 0.47 16 26 H 0.10 1.64 8.01 -2.39 -0.02 1.62 16 27 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.12 1.13 7.85 -2.39 -0.02 1.11 16 29 H 0.10 1.17 8.10 -2.39 -0.02 1.15 16 30 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 31 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 32 H 0.01 0.41 7.16 -2.39 -0.02 0.39 16 33 H 0.01 0.31 7.53 -2.38 -0.02 0.29 16 34 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.07 1.68 6.38 -2.38 -0.02 1.66 16 36 H 0.10 1.74 8.10 -2.39 -0.02 1.72 16 Total: -1.00 -76.07 309.02 6.24 -69.83 By element: Atomic # 1 Polarization: -3.45 SS G_CDS: 1.03 Total: -2.42 kcal Atomic # 6 Polarization: -6.93 SS G_CDS: 3.87 Total: -3.06 kcal Atomic # 7 Polarization: -75.13 SS G_CDS: -2.59 Total: -77.72 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.05 Total: -27.64 kcal Atomic # 9 Polarization: -10.03 SS G_CDS: 2.09 Total: -7.94 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 1.88 Total: 48.94 kcal Total: -76.07 6.24 -69.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457109645.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.704 kcal (2) G-P(sol) polarization free energy of solvation -76.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds