Wall clock time and date at job start Tue Mar 31 2020 00:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46887 * 156.93937 * 3 2 1 5 5 C 1.36942 * 119.99460 * 269.99340 * 4 3 2 6 6 H 1.07995 * 119.99879 * 194.62614 * 5 4 3 7 7 C 1.38812 * 120.00106 * 14.63232 * 5 4 3 8 8 N 1.31621 * 119.99831 * 19.36523 * 7 5 4 9 9 Si 1.86799 * 119.99896 * 199.36338 * 7 5 4 10 10 H 1.48499 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46807 * 120.00061 * 9 7 5 12 12 H 1.48500 * 109.47092 * 239.99791 * 9 7 5 13 13 C 1.46498 * 120.00333 * 89.99799 * 4 3 2 14 14 C 1.50702 * 109.47030 * 275.18677 * 13 4 3 15 15 C 1.34616 * 126.10093 * 260.02918 * 14 13 4 16 16 N 1.36867 * 109.58581 * 179.97438 * 15 14 13 17 17 C 1.36812 * 131.39041 * 180.02562 * 16 15 14 18 18 C 1.34951 * 120.73316 * 179.97438 * 17 16 15 19 19 C 1.40363 * 120.40796 * 0.02562 * 18 17 16 20 20 C 1.36313 * 119.49033 * 0.02562 * 19 18 17 21 21 C 1.37102 * 108.71731 * 359.72238 * 16 15 14 22 22 C 1.40546 * 107.46565 * 0.43576 * 21 16 15 23 23 C 1.43202 * 126.78169 * 179.84052 * 22 21 16 24 24 N 3.10474 * 86.93395 * 256.32079 * 2 1 3 25 25 H 4.40645 * 5.51456 * 179.97438 * 4 1 2 26 26 H 1.08991 * 109.47523 * 36.93234 * 3 2 1 27 27 H 1.09004 * 109.46605 * 276.93277 * 3 2 1 28 28 H 0.97001 * 119.99603 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47260 * 155.19046 * 13 4 3 30 30 H 1.08992 * 109.47101 * 35.18292 * 13 4 3 31 31 H 1.08005 * 125.20920 * 359.96965 * 15 14 13 32 32 H 1.07993 * 119.63014 * 359.97438 * 17 16 15 33 33 H 1.08012 * 119.79358 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.25355 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.33621 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2717 -0.5410 5 6 3.3619 1.4011 -1.8851 6 1 3.9354 2.2371 -2.2574 7 6 2.8561 0.4579 -2.7690 8 7 1.8657 -0.3261 -2.3990 9 14 3.5809 0.3012 -4.4835 10 1 4.6762 1.2901 -4.6501 11 1 4.1200 -1.0699 -4.6695 12 1 2.5231 0.5585 -5.4935 13 6 3.3773 2.4043 0.3557 14 6 2.0895 3.1546 0.5786 15 6 1.7182 4.2930 -0.0364 16 7 0.4869 4.6801 0.4192 17 6 -0.2990 5.7537 0.1007 18 6 -1.4990 5.9296 0.6925 19 6 -1.9615 5.0111 1.6478 20 6 -1.1885 3.9373 1.9756 21 6 0.0530 3.7662 1.3445 22 6 1.0535 2.7874 1.4720 23 6 1.0278 1.6418 2.3309 24 7 1.0079 0.7332 3.0124 25 1 -1.0503 -0.0004 0.0000 26 1 3.0097 -0.8205 -0.6174 27 1 3.0093 -0.1232 1.0202 28 1 1.5120 -0.9850 -3.0168 29 1 4.1134 3.0713 -0.0931 30 1 3.7538 2.0373 1.3104 31 1 2.3024 4.8204 -0.7760 32 1 0.0448 6.4683 -0.6323 33 1 -2.1073 6.7824 0.4293 34 1 -2.9222 5.1545 2.1201 35 1 -1.5307 3.2224 2.7091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491740069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:09 Heat of formation + Delta-G solvation = 199.645266 kcal Electronic energy + Delta-G solvation = -21046.863409 eV Core-core repulsion = 18014.359433 eV Total energy + Delta-G solvation = -3032.503976 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.70 seconds Orbital eigenvalues (eV) -41.94717 -37.18280 -35.64694 -35.53047 -32.84230 -31.63219 -31.28445 -29.67308 -27.88128 -26.31343 -25.75013 -23.27470 -22.72397 -21.81520 -19.73007 -18.01337 -17.36202 -16.66193 -16.24202 -15.86538 -15.27815 -15.17895 -14.75812 -14.29259 -13.68582 -13.54158 -13.23200 -13.12355 -12.68545 -12.42112 -12.08795 -11.94083 -11.56839 -11.46105 -11.40881 -11.23681 -10.97108 -10.83634 -10.54002 -10.24262 -10.04120 -9.93012 -8.79896 -8.72267 -8.26320 -8.03945 -7.07009 -7.02379 -5.73922 -3.18512 0.90129 1.42458 2.81849 2.90447 3.35948 3.43585 3.45408 3.46601 3.53828 4.28756 4.43342 4.55597 4.58455 4.71030 4.84466 4.88001 4.96440 5.13067 5.33096 5.40353 5.62155 5.76403 5.84974 5.93294 6.01251 6.06895 6.19422 6.25846 6.42946 6.56770 6.71488 6.80918 7.05556 7.23102 7.32397 7.52877 7.59686 7.73103 8.25960 8.38321 9.10412 9.46452 9.75704 10.20772 11.24989 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.006513 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.860593 B = 4298.183939 C = 4908.526946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 C -0.073 4.073 3 C 0.272 3.728 4 N -0.575 5.575 5 C -0.261 4.261 6 H 0.079 0.921 7 C 0.002 3.998 8 N -0.884 5.884 9 Si 0.903 3.097 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.293 1.293 13 C 0.198 3.802 14 C -0.053 4.053 15 C -0.052 4.052 16 N -0.335 5.335 17 C 0.061 3.939 18 C -0.158 4.158 19 C -0.120 4.120 20 C -0.091 4.091 21 C 0.093 3.907 22 C -0.118 4.118 23 C 0.306 3.694 24 N -0.453 5.453 25 H 0.180 0.820 26 H 0.092 0.908 27 H 0.033 0.967 28 H 0.254 0.746 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.142 0.858 34 H 0.132 0.868 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 13.171 5.699 14.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.324 4.324 2 C -0.076 4.076 3 C 0.147 3.853 4 N -0.293 5.293 5 C -0.390 4.390 6 H 0.096 0.904 7 C -0.197 4.197 8 N -0.527 5.527 9 Si 0.733 3.267 10 H -0.203 1.203 11 H -0.216 1.216 12 H -0.220 1.220 13 C 0.070 3.930 14 C -0.061 4.061 15 C -0.178 4.178 16 N 0.002 4.998 17 C -0.061 4.061 18 C -0.179 4.179 19 C -0.141 4.141 20 C -0.110 4.110 21 C -0.017 4.017 22 C -0.130 4.130 23 C -0.007 4.007 24 N -0.130 5.130 25 H 0.198 0.802 26 H 0.110 0.890 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.071 0.929 31 H 0.189 0.811 32 H 0.178 0.822 33 H 0.160 0.840 34 H 0.150 0.850 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.927 11.809 6.461 14.022 hybrid contribution -0.507 0.291 -1.698 1.796 sum -4.433 12.100 4.763 13.739 Atomic orbital electron populations 1.23853 0.95014 1.04548 1.09016 1.23742 0.94761 0.96253 0.92871 1.17810 0.83429 0.89481 0.94598 1.44418 1.74731 1.05933 1.04199 1.19298 1.27607 1.10197 0.81861 0.90352 1.24961 0.96662 1.00125 0.97945 1.70108 1.23405 1.24106 1.35055 0.86219 0.78493 0.77669 0.84322 1.20289 1.21567 1.22037 1.19644 0.90050 0.88969 0.94351 1.20947 0.99325 0.92864 0.93003 1.21530 0.86758 1.01542 1.08019 1.41430 1.14292 1.16487 1.27610 1.21664 0.92417 0.90760 1.01283 1.20619 0.95692 1.01817 0.99743 1.20936 1.00128 0.94608 0.98428 1.20510 0.91784 0.98711 0.99992 1.18393 0.95425 0.92234 0.95669 1.15258 0.97696 0.94591 1.05443 1.24394 0.93184 0.91645 0.91505 1.81114 1.08280 1.10446 1.13176 0.80238 0.89033 0.94908 0.93529 0.91256 0.92929 0.81089 0.82203 0.83995 0.85046 0.84477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.59 18.08 29.55 0.53 -7.05 16 2 C -0.07 -1.86 8.05 -37.12 -0.30 -2.16 16 3 C 0.27 6.71 5.27 -6.83 -0.04 6.68 16 4 N -0.57 -13.69 2.49 -177.95 -0.44 -14.13 16 5 C -0.26 -6.68 9.70 -15.06 -0.15 -6.83 16 6 H 0.08 1.92 7.84 -52.49 -0.41 1.51 16 7 C 0.00 0.06 4.97 -17.43 -0.09 -0.02 16 8 N -0.88 -25.02 8.93 55.49 0.50 -24.52 16 9 Si 0.90 21.13 29.60 -169.99 -5.03 16.10 16 10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 13 C 0.20 3.86 6.00 -5.19 -0.03 3.82 16 14 C -0.05 -0.99 5.50 -104.60 -0.57 -1.57 16 15 C -0.05 -0.86 11.44 -16.59 -0.19 -1.05 16 16 N -0.33 -5.10 2.93 -60.76 -0.18 -5.28 16 17 C 0.06 0.69 10.90 -16.50 -0.18 0.51 16 18 C -0.16 -1.57 9.97 -39.95 -0.40 -1.97 16 19 C -0.12 -1.31 10.09 -39.48 -0.40 -1.71 16 20 C -0.09 -1.26 10.05 -39.50 -0.40 -1.65 16 21 C 0.09 1.55 6.72 -83.86 -0.56 0.99 16 22 C -0.12 -2.26 5.32 -105.80 -0.56 -2.82 16 23 C 0.31 6.25 12.17 -22.47 -0.27 5.98 16 24 N -0.45 -9.69 18.41 41.84 0.77 -8.92 16 25 H 0.18 4.02 7.80 -54.08 -0.42 3.60 16 26 H 0.09 2.45 6.57 -51.93 -0.34 2.11 16 27 H 0.03 0.76 7.94 -51.93 -0.41 0.35 16 28 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.07 1.21 7.95 -51.93 -0.41 0.80 16 30 H 0.05 0.97 7.97 -51.93 -0.41 0.56 16 31 H 0.17 2.37 8.06 -52.48 -0.42 1.94 16 32 H 0.16 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 34 H 0.13 1.05 8.06 -52.48 -0.42 0.63 16 35 H 0.14 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 312.56 15.07 4.71 4.71 Total: -1.00 -31.96 312.56 -6.94 -38.90 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -3.66 Total: 2.00 kcal Atomic # 6 Polarization: -5.26 SS G_CDS: -3.60 Total: -8.86 kcal Atomic # 7 Polarization: -53.50 SS G_CDS: 0.65 Total: -52.85 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.03 Total: 16.10 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.96 -6.94 -38.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491740069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 238.546 kcal (2) G-P(sol) polarization free energy of solvation -31.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 206.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.70 seconds