Wall clock time and date at job start Tue Mar 31 2020 00:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46500 * 109.46887 * 156.93937 * 3 2 1 5 5 C 1.36942 * 119.99460 * 269.99340 * 4 3 2 6 6 H 1.07995 * 119.99879 * 194.62614 * 5 4 3 7 7 C 1.38812 * 120.00106 * 14.63232 * 5 4 3 8 8 N 1.31621 * 119.99831 * 19.36523 * 7 5 4 9 9 Si 1.86799 * 119.99896 * 199.36338 * 7 5 4 10 10 H 1.48499 * 109.47193 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46807 * 120.00061 * 9 7 5 12 12 H 1.48500 * 109.47092 * 239.99791 * 9 7 5 13 13 C 1.46498 * 120.00333 * 89.99799 * 4 3 2 14 14 C 1.50702 * 109.47030 * 275.18677 * 13 4 3 15 15 C 1.34616 * 126.10093 * 260.02918 * 14 13 4 16 16 N 1.36867 * 109.58581 * 179.97438 * 15 14 13 17 17 C 1.36812 * 131.39041 * 180.02562 * 16 15 14 18 18 C 1.34951 * 120.73316 * 179.97438 * 17 16 15 19 19 C 1.40363 * 120.40796 * 0.02562 * 18 17 16 20 20 C 1.36313 * 119.49033 * 0.02562 * 19 18 17 21 21 C 1.37102 * 108.71731 * 359.72238 * 16 15 14 22 22 C 1.40546 * 107.46565 * 0.43576 * 21 16 15 23 23 C 1.43202 * 126.78169 * 179.84052 * 22 21 16 24 24 N 3.10474 * 86.93395 * 256.32079 * 2 1 3 25 25 H 4.40645 * 5.51456 * 179.97438 * 4 1 2 26 26 H 1.08991 * 109.47523 * 36.93234 * 3 2 1 27 27 H 1.09004 * 109.46605 * 276.93277 * 3 2 1 28 28 H 0.97001 * 119.99603 * 179.97438 * 8 7 5 29 29 H 1.08999 * 109.47260 * 155.19046 * 13 4 3 30 30 H 1.08992 * 109.47101 * 35.18292 * 13 4 3 31 31 H 1.08005 * 125.20920 * 359.96965 * 15 14 13 32 32 H 1.07993 * 119.63014 * 359.97438 * 17 16 15 33 33 H 1.08012 * 119.79358 * 180.02562 * 18 17 16 34 34 H 1.08004 * 120.25355 * 179.97438 * 19 18 17 35 35 H 1.07997 * 120.33621 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.2717 -0.5410 5 6 3.3619 1.4011 -1.8851 6 1 3.9354 2.2371 -2.2574 7 6 2.8561 0.4579 -2.7690 8 7 1.8657 -0.3261 -2.3990 9 14 3.5809 0.3012 -4.4835 10 1 4.6762 1.2901 -4.6501 11 1 4.1200 -1.0699 -4.6695 12 1 2.5231 0.5585 -5.4935 13 6 3.3773 2.4043 0.3557 14 6 2.0895 3.1546 0.5786 15 6 1.7182 4.2930 -0.0364 16 7 0.4869 4.6801 0.4192 17 6 -0.2990 5.7537 0.1007 18 6 -1.4990 5.9296 0.6925 19 6 -1.9615 5.0111 1.6478 20 6 -1.1885 3.9373 1.9756 21 6 0.0530 3.7662 1.3445 22 6 1.0535 2.7874 1.4720 23 6 1.0278 1.6418 2.3309 24 7 1.0079 0.7332 3.0124 25 1 -1.0503 -0.0004 0.0000 26 1 3.0097 -0.8205 -0.6174 27 1 3.0093 -0.1232 1.0202 28 1 1.5120 -0.9850 -3.0168 29 1 4.1134 3.0713 -0.0931 30 1 3.7538 2.0373 1.3104 31 1 2.3024 4.8204 -0.7760 32 1 0.0448 6.4683 -0.6323 33 1 -2.1073 6.7824 0.4293 34 1 -2.9222 5.1545 2.1201 35 1 -1.5307 3.2224 2.7091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491740069.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:08 Heat of formation + Delta-G solvation = 183.227403 kcal Electronic energy + Delta-G solvation = -21047.575341 eV Core-core repulsion = 18014.359433 eV Total energy + Delta-G solvation = -3033.215907 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 279.107 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.09561 -38.58672 -37.20603 -36.97239 -34.05577 -33.31442 -33.15699 -31.08688 -29.04991 -28.04439 -27.48729 -24.44611 -23.97294 -23.39870 -21.05953 -19.44408 -19.01295 -18.19769 -17.70489 -17.03500 -16.80261 -16.36709 -16.07529 -15.53463 -15.36305 -15.17091 -14.86719 -14.59578 -14.23710 -13.89391 -13.49318 -13.29298 -13.22898 -13.09715 -12.87779 -12.67334 -12.43860 -12.14041 -12.11366 -12.03616 -11.77535 -11.15872 -10.75220 -10.62284 -10.19742 -9.36149 -8.95838 -8.18438 -7.72646 -5.18343 -0.11203 0.36433 1.45743 1.50592 1.55469 1.62705 1.78878 1.96601 2.39466 2.54961 2.62226 2.74775 2.94020 3.37916 3.47983 3.71935 3.91183 3.95446 4.04296 4.13364 4.20159 4.33377 4.48448 4.61261 4.74800 4.85589 4.95723 5.04859 5.15168 5.25896 5.30927 5.42969 5.56366 5.66882 5.72734 5.79560 6.01830 6.30509 6.43894 6.88357 7.12355 7.51030 7.85248 8.29324 9.25560 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018676 B = 0.006513 C = 0.005703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.860593 B = 4298.183939 C = 4908.526946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.083 4.083 3 C 0.279 3.721 4 N -0.587 5.587 5 C -0.254 4.254 6 H 0.092 0.908 7 C -0.053 4.053 8 N -0.917 5.917 9 Si 0.964 3.036 10 H -0.260 1.260 11 H -0.299 1.299 12 H -0.303 1.303 13 C 0.197 3.803 14 C -0.076 4.076 15 C -0.055 4.055 16 N -0.336 5.336 17 C 0.052 3.948 18 C -0.149 4.149 19 C -0.086 4.086 20 C -0.133 4.133 21 C 0.098 3.902 22 C -0.170 4.170 23 C 0.316 3.684 24 N -0.494 5.494 25 H 0.198 0.802 26 H 0.064 0.936 27 H 0.038 0.962 28 H 0.242 0.758 29 H 0.090 0.910 30 H 0.053 0.947 31 H 0.196 0.804 32 H 0.199 0.801 33 H 0.190 0.810 34 H 0.169 0.831 35 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.249 17.014 4.969 18.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.335 4.335 2 C -0.086 4.086 3 C 0.154 3.846 4 N -0.306 5.306 5 C -0.384 4.384 6 H 0.109 0.891 7 C -0.248 4.248 8 N -0.563 5.563 9 Si 0.794 3.206 10 H -0.184 1.184 11 H -0.227 1.227 12 H -0.231 1.231 13 C 0.071 3.929 14 C -0.084 4.084 15 C -0.180 4.180 16 N 0.001 4.999 17 C -0.069 4.069 18 C -0.168 4.168 19 C -0.108 4.108 20 C -0.152 4.152 21 C -0.014 4.014 22 C -0.182 4.182 23 C 0.005 3.995 24 N -0.173 5.173 25 H 0.215 0.785 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.213 0.787 32 H 0.216 0.784 33 H 0.207 0.793 34 H 0.186 0.814 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -5.236 15.706 5.749 17.526 hybrid contribution -0.261 -0.600 -1.377 1.525 sum -5.497 15.106 4.372 16.659 Atomic orbital electron populations 1.24353 0.95765 1.04484 1.08896 1.23992 0.95236 0.96379 0.92983 1.17581 0.83358 0.89570 0.94134 1.44449 1.74912 1.06984 1.04212 1.19665 1.26378 1.09746 0.82581 0.89080 1.25624 0.97404 1.00610 1.01164 1.70282 1.25215 1.25123 1.35679 0.85249 0.77758 0.77227 0.80384 1.18441 1.22655 1.23133 1.19699 0.91245 0.88226 0.93741 1.20723 0.98698 0.94455 0.94550 1.21738 0.87443 1.01051 1.07804 1.41617 1.14235 1.17074 1.26939 1.22561 0.92547 0.89909 1.01897 1.21280 0.95248 1.02367 0.97923 1.21525 1.00398 0.92359 0.96502 1.20687 0.91849 1.00952 1.01713 1.18659 0.95675 0.91638 0.95470 1.15421 0.99633 0.95703 1.07394 1.24786 0.92156 0.91574 0.91006 1.81079 1.09664 1.11690 1.14856 0.78471 0.91784 0.94428 0.94816 0.89165 0.92899 0.78676 0.78446 0.79315 0.81371 0.84586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.32 -16.14 18.08 74.32 1.34 -14.80 16 2 C -0.08 -4.37 8.05 31.13 0.25 -4.12 16 3 C 0.28 14.36 5.27 84.57 0.45 14.81 16 4 N -0.59 -28.35 2.49 -716.92 -1.78 -30.13 16 5 C -0.25 -13.01 9.70 84.03 0.81 -12.19 16 6 H 0.09 4.34 7.84 -2.91 -0.02 4.31 16 7 C -0.05 -2.84 4.97 84.86 0.42 -2.42 16 8 N -0.92 -53.44 8.93 21.65 0.19 -53.25 16 9 Si 0.96 43.98 29.60 68.60 2.03 46.01 16 10 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 11 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 12 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 13 C 0.20 7.72 6.00 85.63 0.51 8.23 16 14 C -0.08 -2.86 5.50 -19.85 -0.11 -2.97 16 15 C -0.05 -1.70 11.44 83.08 0.95 -0.75 16 16 N -0.34 -9.32 2.93 -346.16 -1.01 -10.34 16 17 C 0.05 0.93 10.90 83.16 0.91 1.83 16 18 C -0.15 -2.05 9.97 22.03 0.22 -1.83 16 19 C -0.09 -1.47 10.09 22.34 0.23 -1.25 16 20 C -0.13 -3.42 10.05 22.33 0.22 -3.20 16 21 C 0.10 3.16 6.72 39.39 0.26 3.43 16 22 C -0.17 -6.60 5.32 -20.63 -0.11 -6.71 16 23 C 0.32 13.46 12.17 88.33 1.07 14.53 16 24 N -0.49 -22.21 18.41 19.00 0.35 -21.86 16 25 H 0.20 8.97 7.80 -4.40 -0.03 8.94 16 26 H 0.06 3.62 6.57 -2.39 -0.02 3.60 16 27 H 0.04 1.85 7.94 -2.39 -0.02 1.83 16 28 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 29 H 0.09 3.06 7.95 -2.39 -0.02 3.04 16 30 H 0.05 2.02 7.97 -2.39 -0.02 2.00 16 31 H 0.20 4.84 8.06 -2.91 -0.02 4.82 16 32 H 0.20 1.98 8.06 -2.91 -0.02 1.95 16 33 H 0.19 0.95 8.06 -2.90 -0.02 0.93 16 34 H 0.17 1.67 8.06 -2.91 -0.02 1.64 16 35 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 Total: -1.00 -72.55 312.56 8.31 -64.23 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 1.10 Total: 12.74 kcal Atomic # 6 Polarization: -14.84 SS G_CDS: 7.44 Total: -7.40 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -2.26 Total: -115.58 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -72.55 8.31 -64.23 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491740069.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 247.459 kcal (2) G-P(sol) polarization free energy of solvation -72.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 174.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.232 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds