Wall clock time and date at job start Tue Mar 31 2020 00:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46976 * 2 1 4 4 H 1.09000 * 109.46823 * 305.64822 * 3 2 1 5 5 C 1.50704 * 109.46687 * 185.64708 * 3 2 1 6 6 H 1.07994 * 119.99881 * 245.39131 * 5 3 2 7 7 C 1.37881 * 119.99643 * 65.39453 * 5 3 2 8 8 N 1.31515 * 119.99825 * 197.19759 * 7 5 3 9 9 Si 1.86800 * 120.00143 * 17.20175 * 7 5 3 10 10 H 1.48506 * 109.47333 * 86.80487 * 9 7 5 11 11 H 1.48504 * 109.46848 * 206.80157 * 9 7 5 12 12 H 1.48499 * 109.47222 * 326.80070 * 9 7 5 13 13 N 1.46894 * 109.46987 * 65.65069 * 3 2 1 14 14 C 1.46904 * 110.99797 * 251.31030 * 13 3 2 15 15 C 1.50697 * 109.47052 * 183.09283 * 14 13 3 16 16 C 1.32577 * 119.99808 * 125.00285 * 15 14 13 17 17 C 1.47808 * 119.99988 * 180.02562 * 16 15 14 18 18 C 1.39546 * 120.12756 * 359.72445 * 17 16 15 19 19 C 1.37953 * 119.86760 * 179.76727 * 18 17 16 20 20 C 1.38463 * 120.12640 * 0.51038 * 19 18 17 21 21 Cl 1.73600 * 119.86882 * 179.76379 * 20 19 18 22 22 C 1.38467 * 120.26185 * 359.74452 * 20 19 18 23 23 C 1.37949 * 120.12608 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47087 * 305.50527 * 1 2 3 25 25 H 1.09000 * 109.47020 * 185.50825 * 1 2 3 26 26 H 1.08995 * 109.46555 * 65.50734 * 1 2 3 27 27 H 1.09006 * 109.47118 * 120.00084 * 2 1 3 28 28 H 1.08998 * 109.47312 * 239.99546 * 2 1 3 29 29 H 0.96999 * 120.00227 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00051 * 127.36544 * 13 3 2 31 31 H 1.08995 * 109.47228 * 303.09638 * 14 13 3 32 32 H 1.09006 * 109.46560 * 63.10364 * 14 13 3 33 33 H 1.08000 * 120.00346 * 305.00688 * 15 14 13 34 34 H 1.08000 * 119.99846 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.06248 * 0.02562 * 18 17 16 36 36 H 1.07995 * 119.93239 * 180.23165 * 19 18 17 37 37 H 1.07993 * 119.93416 * 179.97438 * 22 20 19 38 38 H 1.07999 * 120.06591 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5406 1.4447 -0.1398 6 1 4.1577 1.8069 0.6691 7 6 4.1254 0.9844 -1.3005 8 7 5.4014 0.6659 -1.3124 9 14 3.1056 0.8134 -2.8562 10 1 3.0969 2.1062 -3.5870 11 1 3.6949 -0.2401 -3.7210 12 1 1.7143 0.4383 -2.4972 13 7 1.6649 2.0945 1.2617 14 6 0.6096 3.0931 1.0448 15 6 0.3051 3.7926 2.3444 16 6 0.3696 5.1149 2.4165 17 6 0.0716 5.8009 3.6913 18 6 -0.2836 5.0599 4.8191 19 6 -0.5560 5.7055 6.0075 20 6 -0.4878 7.0865 6.0797 21 17 -0.8379 7.8924 7.5769 22 6 -0.1411 7.8274 4.9624 23 6 0.1391 7.1925 3.7702 24 1 -0.3633 0.5969 0.8366 25 1 -0.3633 -1.0229 0.0986 26 1 -0.3632 0.4260 -0.9352 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 5.8129 0.3424 -2.1290 30 1 2.4693 2.5096 1.7074 31 1 0.9462 3.8235 0.3092 32 1 -0.2900 2.5975 0.6796 33 1 0.0345 3.2168 3.2171 34 1 0.6400 5.6906 1.5437 35 1 -0.3410 3.9829 4.7628 36 1 -0.8273 5.1328 6.8820 37 1 -0.0899 8.9043 5.0246 38 1 0.4098 7.7713 2.8995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000555162965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:34 Heat of formation + Delta-G solvation = 24.151311 kcal Electronic energy + Delta-G solvation = -18283.008950 eV Core-core repulsion = 15344.002480 eV Total energy + Delta-G solvation = -2939.006471 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.51084 -37.03206 -36.62131 -34.54511 -32.33482 -31.47140 -31.32098 -29.44136 -27.23883 -24.47443 -23.21736 -22.50304 -21.78998 -19.81082 -19.16302 -17.56754 -16.98994 -15.85486 -15.43290 -15.31484 -14.52803 -14.05106 -13.80124 -13.75376 -13.54419 -13.34985 -12.94182 -12.56404 -12.48099 -11.98048 -11.96384 -11.80992 -11.63128 -11.40009 -11.23567 -10.92225 -10.81451 -10.66683 -10.27938 -10.00181 -9.81216 -9.47016 -9.28022 -9.22551 -8.45473 -8.11573 -7.51398 -6.18710 -4.13640 0.63895 1.09886 1.91734 2.38129 3.23882 3.33556 3.36331 3.63715 4.36201 4.50757 4.61303 4.64865 5.03803 5.08323 5.11990 5.19581 5.35616 5.45344 5.58695 5.73969 5.91016 5.95716 6.02072 6.05683 6.08044 6.13090 6.19550 6.28360 6.56267 6.61148 6.71392 6.75241 6.79976 7.02808 7.05990 7.42354 7.60463 7.92341 8.29237 8.54311 8.90301 9.47745 10.94121 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033445 B = 0.002783 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.991792 B =10057.011065 C =10325.750564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.107 4.107 3 C 0.191 3.809 4 H 0.008 0.992 5 C -0.540 4.540 6 H 0.075 0.925 7 C 0.080 3.920 8 N -0.887 5.887 9 Si 0.863 3.137 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.252 1.252 13 N -0.678 5.678 14 C 0.080 3.920 15 C -0.104 4.104 16 C -0.148 4.148 17 C -0.032 4.032 18 C -0.108 4.108 19 C -0.106 4.106 20 C -0.045 4.045 21 Cl -0.079 7.079 22 C -0.108 4.108 23 C -0.104 4.104 24 H 0.056 0.944 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.058 0.942 28 H 0.050 0.950 29 H 0.264 0.736 30 H 0.341 0.659 31 H 0.031 0.969 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.120 0.880 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.132 0.868 38 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.676 11.774 11.579 21.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C 0.082 3.918 4 H 0.026 0.974 5 C -0.578 4.578 6 H 0.093 0.907 7 C -0.124 4.124 8 N -0.524 5.524 9 Si 0.690 3.310 10 H -0.206 1.206 11 H -0.214 1.214 12 H -0.176 1.176 13 N -0.309 5.309 14 C -0.049 4.049 15 C -0.122 4.122 16 C -0.167 4.167 17 C -0.032 4.032 18 C -0.126 4.126 19 C -0.124 4.124 20 C -0.071 4.071 21 Cl -0.050 7.050 22 C -0.127 4.127 23 C -0.123 4.123 24 H 0.075 0.925 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.074 0.926 30 H 0.160 0.840 31 H 0.049 0.951 32 H 0.095 0.905 33 H 0.135 0.865 34 H 0.138 0.862 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -13.983 11.261 11.774 21.470 hybrid contribution 0.150 0.684 -1.236 1.421 sum -13.833 11.945 10.537 21.096 Atomic orbital electron populations 1.21858 0.98612 0.99750 1.00432 1.21833 0.92711 0.99238 1.00829 1.19462 0.95290 0.90917 0.86109 0.97425 1.21302 0.89549 1.44256 1.02685 0.90691 1.24906 0.94764 0.93818 0.98922 1.70000 1.12118 1.42269 1.27995 0.87186 0.82137 0.77989 0.83692 1.20616 1.21358 1.17607 1.60633 1.13243 1.30311 1.26696 1.21172 0.97167 0.93855 0.92749 1.23627 0.94717 0.94573 0.99308 1.21640 1.04522 0.95088 0.95458 1.19234 0.96982 0.93162 0.93831 1.21353 0.99117 1.00552 0.91587 1.20979 1.00413 0.92244 0.98797 1.20965 1.05495 0.92943 0.87744 1.98361 1.93567 1.79929 1.33161 1.20964 0.99941 1.00231 0.91546 1.21243 0.99803 0.93762 0.97455 0.92462 0.94609 0.94567 0.92355 0.93163 0.92577 0.84049 0.95131 0.90475 0.86491 0.86194 0.84560 0.84964 0.85051 0.84905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.67 9.49 37.16 0.35 -2.32 16 2 C -0.11 -2.32 4.95 -26.73 -0.13 -2.45 16 3 C 0.19 4.33 1.74 -68.87 -0.12 4.21 16 4 H 0.01 0.19 6.16 -51.93 -0.32 -0.13 16 5 C -0.54 -14.61 9.00 -34.44 -0.31 -14.92 16 6 H 0.08 2.19 7.62 -52.49 -0.40 1.79 16 7 C 0.08 2.23 5.30 -17.82 -0.09 2.13 16 8 N -0.89 -26.47 13.96 55.43 0.77 -25.69 16 9 Si 0.86 20.75 25.86 -169.99 -4.40 16.35 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.25 -5.72 5.65 56.52 0.32 -5.40 16 13 N -0.68 -13.06 5.97 -109.22 -0.65 -13.71 16 14 C 0.08 1.26 5.54 -4.98 -0.03 1.24 16 15 C -0.10 -1.36 9.17 -36.22 -0.33 -1.69 16 16 C -0.15 -1.78 9.52 -37.58 -0.36 -2.14 16 17 C -0.03 -0.36 5.87 -105.01 -0.62 -0.98 16 18 C -0.11 -1.15 9.40 -39.20 -0.37 -1.51 16 19 C -0.11 -1.06 9.81 -39.60 -0.39 -1.44 16 20 C -0.04 -0.46 6.32 -39.41 -0.25 -0.71 16 21 Cl -0.08 -0.75 28.95 -51.86 -1.50 -2.25 16 22 C -0.11 -1.04 9.81 -39.60 -0.39 -1.43 16 23 C -0.10 -1.05 9.78 -39.20 -0.38 -1.43 16 24 H 0.06 0.97 6.28 -51.93 -0.33 0.64 16 25 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 28 H 0.05 1.15 5.17 -51.93 -0.27 0.88 16 29 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 30 H 0.34 6.80 7.79 -39.29 -0.31 6.50 16 31 H 0.03 0.50 7.75 -51.93 -0.40 0.10 16 32 H 0.08 1.19 6.63 -51.93 -0.34 0.85 16 33 H 0.12 1.42 6.04 -52.49 -0.32 1.10 16 34 H 0.12 1.38 7.87 -52.49 -0.41 0.97 16 35 H 0.14 1.30 6.17 -52.49 -0.32 0.98 16 36 H 0.13 1.10 8.06 -52.49 -0.42 0.67 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -28.70 324.66 -9.47 -38.18 By element: Atomic # 1 Polarization: 10.86 SS G_CDS: -5.17 Total: 5.68 kcal Atomic # 6 Polarization: -20.04 SS G_CDS: -3.42 Total: -23.45 kcal Atomic # 7 Polarization: -39.53 SS G_CDS: 0.12 Total: -39.40 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.40 Total: 16.35 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -28.70 -9.47 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555162965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.328 kcal (2) G-P(sol) polarization free energy of solvation -28.704 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds