Wall clock time and date at job start Tue Mar 31 2020 00:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46976 * 2 1 4 4 H 1.09000 * 109.46823 * 305.64822 * 3 2 1 5 5 C 1.50704 * 109.46687 * 185.64708 * 3 2 1 6 6 H 1.07994 * 119.99881 * 245.39131 * 5 3 2 7 7 C 1.37881 * 119.99643 * 65.39453 * 5 3 2 8 8 N 1.31515 * 119.99825 * 197.19759 * 7 5 3 9 9 Si 1.86800 * 120.00143 * 17.20175 * 7 5 3 10 10 H 1.48506 * 109.47333 * 86.80487 * 9 7 5 11 11 H 1.48504 * 109.46848 * 206.80157 * 9 7 5 12 12 H 1.48499 * 109.47222 * 326.80070 * 9 7 5 13 13 N 1.46894 * 109.46987 * 65.65069 * 3 2 1 14 14 C 1.46904 * 110.99797 * 251.31030 * 13 3 2 15 15 C 1.50697 * 109.47052 * 183.09283 * 14 13 3 16 16 C 1.32577 * 119.99808 * 125.00285 * 15 14 13 17 17 C 1.47808 * 119.99988 * 180.02562 * 16 15 14 18 18 C 1.39546 * 120.12756 * 359.72445 * 17 16 15 19 19 C 1.37953 * 119.86760 * 179.76727 * 18 17 16 20 20 C 1.38463 * 120.12640 * 0.51038 * 19 18 17 21 21 Cl 1.73600 * 119.86882 * 179.76379 * 20 19 18 22 22 C 1.38467 * 120.26185 * 359.74452 * 20 19 18 23 23 C 1.37949 * 120.12608 * 359.97438 * 22 20 19 24 24 H 1.09002 * 109.47087 * 305.50527 * 1 2 3 25 25 H 1.09000 * 109.47020 * 185.50825 * 1 2 3 26 26 H 1.08995 * 109.46555 * 65.50734 * 1 2 3 27 27 H 1.09006 * 109.47118 * 120.00084 * 2 1 3 28 28 H 1.08998 * 109.47312 * 239.99546 * 2 1 3 29 29 H 0.96999 * 120.00227 * 180.02562 * 8 7 5 30 30 H 1.00900 * 111.00051 * 127.36544 * 13 3 2 31 31 H 1.08995 * 109.47228 * 303.09638 * 14 13 3 32 32 H 1.09006 * 109.46560 * 63.10364 * 14 13 3 33 33 H 1.08000 * 120.00346 * 305.00688 * 15 14 13 34 34 H 1.08000 * 119.99846 * 0.02562 * 16 15 14 35 35 H 1.07998 * 120.06248 * 0.02562 * 18 17 16 36 36 H 1.07995 * 119.93239 * 180.23165 * 19 18 17 37 37 H 1.07993 * 119.93416 * 179.97438 * 22 20 19 38 38 H 1.07999 * 120.06591 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5964 1.9847 -0.8351 5 6 3.5406 1.4447 -0.1398 6 1 4.1577 1.8069 0.6691 7 6 4.1254 0.9844 -1.3005 8 7 5.4014 0.6659 -1.3124 9 14 3.1056 0.8134 -2.8562 10 1 3.0969 2.1062 -3.5870 11 1 3.6949 -0.2401 -3.7210 12 1 1.7143 0.4383 -2.4972 13 7 1.6649 2.0945 1.2617 14 6 0.6096 3.0931 1.0448 15 6 0.3051 3.7926 2.3444 16 6 0.3696 5.1149 2.4165 17 6 0.0716 5.8009 3.6913 18 6 -0.2836 5.0599 4.8191 19 6 -0.5560 5.7055 6.0075 20 6 -0.4878 7.0865 6.0797 21 17 -0.8379 7.8924 7.5769 22 6 -0.1411 7.8274 4.9624 23 6 0.1391 7.1925 3.7702 24 1 -0.3633 0.5969 0.8366 25 1 -0.3633 -1.0229 0.0986 26 1 -0.3632 0.4260 -0.9352 27 1 1.8934 -0.5139 0.8900 28 1 1.8934 -0.5139 -0.8899 29 1 5.8129 0.3424 -2.1290 30 1 2.4693 2.5096 1.7074 31 1 0.9462 3.8235 0.3092 32 1 -0.2900 2.5975 0.6796 33 1 0.0345 3.2168 3.2171 34 1 0.6400 5.6906 1.5437 35 1 -0.3410 3.9829 4.7628 36 1 -0.8273 5.1328 6.8820 37 1 -0.0899 8.9043 5.0246 38 1 0.4098 7.7713 2.8995 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000555162965.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:33 Heat of formation + Delta-G solvation = 8.377680 kcal Electronic energy + Delta-G solvation = -18283.692946 eV Core-core repulsion = 15344.002480 eV Total energy + Delta-G solvation = -2939.690467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.30104 -38.46729 -37.50638 -35.76490 -34.22712 -32.87075 -32.08636 -30.63379 -28.85397 -25.80340 -24.23485 -23.94421 -22.77942 -21.44318 -20.28004 -19.03058 -18.27313 -17.19095 -16.66308 -16.30272 -15.83740 -15.54099 -14.98017 -14.73901 -14.70822 -14.53220 -14.41661 -13.99121 -13.84719 -13.44739 -13.15552 -12.89128 -12.72494 -12.68945 -12.58600 -12.30026 -12.22746 -11.86842 -11.70798 -11.57848 -11.24459 -11.12535 -10.86219 -10.55637 -10.03773 -9.09462 -9.00718 -8.34191 -6.33026 -0.20716 0.33987 1.15307 1.33747 1.37123 1.45864 1.47339 2.33997 2.82012 3.00321 3.52986 3.77502 3.87059 3.93844 4.23625 4.29886 4.37644 4.47407 4.51997 4.56222 4.66836 4.72996 4.76597 4.81989 4.92531 5.01055 5.19719 5.24040 5.26164 5.34009 5.34492 5.44913 5.57351 5.70272 5.78787 5.82712 5.86511 6.03471 6.47197 6.66819 6.87342 7.32620 8.82212 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.033445 B = 0.002783 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.991792 B =10057.011065 C =10325.750564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.109 4.109 3 C 0.196 3.804 4 H 0.009 0.991 5 C -0.544 4.544 6 H 0.036 0.964 7 C 0.023 3.977 8 N -0.938 5.938 9 Si 0.926 3.074 10 H -0.275 1.275 11 H -0.288 1.288 12 H -0.227 1.227 13 N -0.676 5.676 14 C 0.083 3.917 15 C -0.119 4.119 16 C -0.131 4.131 17 C -0.053 4.053 18 C -0.113 4.113 19 C -0.112 4.112 20 C -0.051 4.051 21 Cl -0.074 7.074 22 C -0.112 4.112 23 C -0.105 4.105 24 H 0.066 0.934 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.045 0.955 28 H 0.036 0.964 29 H 0.266 0.734 30 H 0.334 0.666 31 H 0.024 0.976 32 H 0.085 0.915 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.144 0.856 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.084 12.552 11.622 23.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.148 4.148 3 C 0.087 3.913 4 H 0.027 0.973 5 C -0.582 4.582 6 H 0.055 0.945 7 C -0.176 4.176 8 N -0.577 5.577 9 Si 0.750 3.250 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.150 1.150 13 N -0.306 5.306 14 C -0.046 4.046 15 C -0.138 4.138 16 C -0.150 4.150 17 C -0.053 4.053 18 C -0.131 4.131 19 C -0.131 4.131 20 C -0.078 4.078 21 Cl -0.045 7.045 22 C -0.131 4.131 23 C -0.123 4.123 24 H 0.085 0.915 25 H 0.074 0.926 26 H 0.062 0.938 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.151 0.849 31 H 0.042 0.958 32 H 0.103 0.897 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.162 0.838 36 H 0.165 0.835 37 H 0.167 0.833 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.423 12.049 11.835 23.558 hybrid contribution 0.939 0.557 -1.093 1.545 sum -15.484 12.607 10.742 22.673 Atomic orbital electron populations 1.21758 0.95255 1.01438 1.01285 1.21756 0.95686 0.97770 0.99558 1.19335 0.92148 0.92238 0.87626 0.97350 1.21645 0.91974 1.43070 1.01489 0.94543 1.25768 0.95817 0.93671 1.02367 1.70134 1.14270 1.44306 1.28962 0.86169 0.81632 0.78019 0.79180 1.20089 1.21417 1.15021 1.60615 1.13512 1.31715 1.24779 1.21182 0.96048 0.93092 0.94279 1.23389 0.97070 0.94888 0.98406 1.21747 1.02479 0.94826 0.95985 1.19302 0.98457 0.93842 0.93673 1.21510 0.98838 1.01062 0.91649 1.21178 1.00260 0.92463 0.99166 1.21168 1.05185 0.93253 0.88171 1.98365 1.93496 1.79799 1.32836 1.21206 0.99427 1.01245 0.91189 1.21478 0.99077 0.93483 0.98268 0.91470 0.92598 0.93806 0.93637 0.94576 0.92524 0.84854 0.95800 0.89655 0.85564 0.85797 0.83841 0.83546 0.83260 0.83269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.49 71.98 0.68 -3.90 16 2 C -0.11 -4.57 4.95 30.60 0.15 -4.41 16 3 C 0.20 8.77 1.74 44.17 0.08 8.85 16 4 H 0.01 0.39 6.16 -2.39 -0.01 0.38 16 5 C -0.54 -30.13 9.00 25.60 0.23 -29.90 16 6 H 0.04 2.24 7.62 -2.91 -0.02 2.22 16 7 C 0.02 1.30 5.30 84.66 0.45 1.75 16 8 N -0.94 -57.66 13.96 21.45 0.30 -57.36 16 9 Si 0.93 42.70 25.86 68.60 1.77 44.48 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.23 -9.50 5.65 99.48 0.56 -8.94 16 13 N -0.68 -25.74 5.97 -499.46 -2.98 -28.72 16 14 C 0.08 2.50 5.54 85.56 0.47 2.98 16 15 C -0.12 -2.95 9.17 24.53 0.22 -2.72 16 16 C -0.13 -2.96 9.52 23.65 0.23 -2.74 16 17 C -0.05 -1.10 5.87 -20.12 -0.12 -1.22 16 18 C -0.11 -2.21 9.40 22.52 0.21 -2.00 16 19 C -0.11 -2.05 9.81 22.26 0.22 -1.83 16 20 C -0.05 -0.95 6.32 22.38 0.14 -0.81 16 21 Cl -0.07 -1.27 28.95 -2.72 -0.08 -1.34 16 22 C -0.11 -1.93 9.81 22.26 0.22 -1.71 16 23 C -0.11 -1.91 9.78 22.52 0.22 -1.69 16 24 H 0.07 2.06 6.28 -2.39 -0.01 2.05 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.04 1.98 8.14 -2.38 -0.02 1.96 16 28 H 0.04 1.59 5.17 -2.39 -0.01 1.58 16 29 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 30 H 0.33 13.54 7.79 -89.69 -0.70 12.85 16 31 H 0.02 0.76 7.75 -2.39 -0.02 0.74 16 32 H 0.09 2.44 6.63 -2.38 -0.02 2.42 16 33 H 0.13 2.87 6.04 -2.91 -0.02 2.85 16 34 H 0.12 2.65 7.87 -2.91 -0.02 2.63 16 35 H 0.14 2.52 6.17 -2.91 -0.02 2.50 16 36 H 0.15 2.16 8.06 -2.91 -0.02 2.14 16 37 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 38 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 Total: -1.00 -62.28 324.66 2.64 -59.64 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: 0.22 Total: 22.66 kcal Atomic # 6 Polarization: -42.76 SS G_CDS: 3.41 Total: -39.36 kcal Atomic # 7 Polarization: -83.40 SS G_CDS: -2.68 Total: -86.08 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 1.77 Total: 44.48 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.34 kcal Total: -62.28 2.64 -59.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000555162965.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.018 kcal (2) G-P(sol) polarization free energy of solvation -62.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds