Wall clock time and date at job start Tue Mar 31 2020 00:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47229 * 2 1 4 4 H 1.08999 * 109.47388 * 54.36891 * 3 2 1 5 5 C 1.50704 * 109.47122 * 174.36706 * 3 2 1 6 6 H 1.07992 * 120.00214 * 119.99419 * 5 3 2 7 7 C 1.37884 * 119.99781 * 300.00044 * 5 3 2 8 8 N 1.31510 * 119.99742 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99831 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46925 * 119.99916 * 9 7 5 12 12 H 1.48493 * 109.47166 * 239.99788 * 9 7 5 13 13 N 1.46902 * 109.47186 * 294.36497 * 3 2 1 14 14 C 1.46902 * 111.00041 * 158.56470 * 13 3 2 15 15 H 1.09002 * 110.26914 * 31.74612 * 14 13 3 16 16 C 1.54343 * 110.30330 * 153.93124 * 14 13 3 17 17 C 1.54347 * 102.39631 * 145.27494 * 16 14 13 18 18 C 1.51370 * 105.16781 * 333.64503 * 17 16 14 19 19 C 1.38240 * 109.76008 * 17.19377 * 18 17 16 20 20 C 1.38463 * 119.85767 * 180.02562 * 19 18 17 21 21 C 1.38147 * 120.24417 * 359.97364 * 20 19 18 22 22 C 1.38194 * 119.94880 * 0.02577 * 21 20 19 23 23 C 1.38265 * 119.91910 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 119.90405 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.47284 * 305.78560 * 1 2 3 26 26 H 1.08996 * 109.47339 * 65.78470 * 1 2 3 27 27 H 1.09001 * 109.47915 * 185.78682 * 1 2 3 28 28 H 1.08998 * 109.46932 * 239.99282 * 2 1 3 29 29 H 1.09002 * 109.46887 * 119.99879 * 2 1 3 30 30 H 0.97004 * 119.99378 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99846 * 34.61025 * 13 3 2 32 32 H 1.08999 * 110.81998 * 263.49939 * 16 14 13 33 33 H 1.09000 * 110.82561 * 27.04322 * 16 14 13 34 34 H 1.09003 * 110.30048 * 214.72646 * 17 16 14 35 35 H 1.08994 * 110.38684 * 92.60979 * 17 16 14 36 36 H 1.08006 * 119.87839 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.02577 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.04076 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9846 0.8352 5 6 3.5405 1.4447 0.1395 6 1 4.1539 1.8863 -0.6319 7 6 4.1303 0.8828 1.2519 8 7 3.3833 0.3454 2.1915 9 14 5.9904 0.8849 1.4245 10 1 6.5965 1.5458 0.2408 11 1 6.3725 1.6251 2.6538 12 1 6.4806 -0.5137 1.5163 13 7 1.6645 2.0946 -1.2616 14 6 1.6662 3.5567 -1.1194 15 1 2.4225 3.8649 -0.3975 16 6 1.9220 4.2274 -2.4857 17 6 1.0573 5.5027 -2.3959 18 6 -0.0505 5.1622 -1.4221 19 6 0.2994 4.0440 -0.6885 20 6 -0.5694 3.5481 0.2688 21 6 -1.7839 4.1669 0.4937 22 6 -2.1347 5.2848 -0.2390 23 6 -1.2689 5.7820 -1.1956 24 17 -1.7103 7.1860 -2.1163 25 1 -0.3634 0.6009 0.8337 26 1 -0.3634 0.4215 -0.9372 27 1 -0.3635 -1.0224 0.1036 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7983 -0.0502 2.9739 31 1 0.7684 1.7640 -1.5868 32 1 2.9757 4.4812 -2.6015 33 1 1.5848 3.5872 -3.3009 34 1 0.6402 5.7464 -3.3730 35 1 1.6489 6.3369 -2.0190 36 1 -0.2966 2.6742 0.8419 37 1 -2.4586 3.7773 1.2416 38 1 -3.0836 5.7700 -0.0641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:31 Heat of formation + Delta-G solvation = 6.074257 kcal Electronic energy + Delta-G solvation = -19850.777755 eV Core-core repulsion = 16910.987404 eV Total energy + Delta-G solvation = -2939.790350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.10825 -36.87952 -36.06054 -34.97873 -32.23472 -31.09720 -29.89172 -28.74210 -26.81745 -25.08453 -22.74323 -22.47384 -20.95521 -20.12629 -19.49621 -16.75594 -16.13649 -15.61195 -15.24701 -15.02239 -14.54182 -14.19671 -13.66934 -13.52218 -13.08482 -12.78706 -12.59158 -12.22224 -11.98211 -11.65227 -11.50437 -11.39439 -11.32445 -11.06612 -11.01079 -10.82579 -10.72484 -10.62253 -10.45201 -9.99108 -9.69676 -9.53786 -9.12515 -8.52159 -8.46821 -8.38384 -7.27298 -5.99926 -4.03950 1.32659 1.40863 2.22410 3.29677 3.38161 3.42809 3.76700 4.42773 4.56623 4.77175 5.05539 5.18755 5.29948 5.32505 5.47427 5.50096 5.60435 5.73646 5.93702 6.04084 6.13221 6.14196 6.17008 6.17963 6.28113 6.38320 6.44684 6.54301 6.64703 6.77877 6.82070 6.98255 7.05157 7.15279 7.48016 7.75128 7.89287 8.24149 8.35371 8.71583 9.04333 9.61405 11.05436 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.004981 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.558066 B = 5619.922330 C = 6168.740783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.125 4.125 3 C 0.216 3.784 4 H 0.005 0.995 5 C -0.495 4.495 6 H 0.062 0.938 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.285 1.285 13 N -0.673 5.673 14 C 0.131 3.869 15 H 0.101 0.899 16 C -0.105 4.105 17 C -0.081 4.081 18 C -0.089 4.089 19 C -0.097 4.097 20 C -0.097 4.097 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.026 4.026 24 Cl -0.086 7.086 25 H 0.042 0.958 26 H 0.035 0.965 27 H 0.037 0.963 28 H 0.041 0.959 29 H 0.099 0.901 30 H 0.259 0.741 31 H 0.321 0.679 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.133 0.867 37 H 0.129 0.871 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.563 8.795 -5.746 14.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C 0.109 3.891 4 H 0.022 0.978 5 C -0.533 4.533 6 H 0.080 0.920 7 C -0.144 4.144 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.211 1.211 13 N -0.303 5.303 14 C 0.020 3.980 15 H 0.119 0.881 16 C -0.143 4.143 17 C -0.118 4.118 18 C -0.090 4.090 19 C -0.100 4.100 20 C -0.116 4.116 21 C -0.130 4.130 22 C -0.139 4.139 23 C -0.052 4.052 24 Cl -0.057 7.057 25 H 0.061 0.939 26 H 0.054 0.946 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.117 0.883 30 H 0.069 0.931 31 H 0.139 0.861 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.150 0.850 37 H 0.147 0.853 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -8.912 8.770 -5.915 13.832 hybrid contribution -0.039 0.214 0.797 0.826 sum -8.950 8.984 -5.119 13.676 Atomic orbital electron populations 1.21915 0.99637 0.99745 0.99467 1.21755 0.91176 1.00347 1.03114 1.19239 0.95490 0.90014 0.84329 0.97788 1.21245 0.91245 1.36616 1.04234 0.91970 1.24945 0.98052 0.95591 0.95844 1.69875 1.34599 1.39479 1.09559 0.86514 0.85853 0.77621 0.77865 1.19763 1.21266 1.21145 1.60830 1.33545 1.01795 1.34103 1.21195 0.90673 0.90049 0.96098 0.88076 1.22341 0.99718 0.94431 0.97857 1.21097 0.94049 0.99250 0.97402 1.20449 0.93592 0.95888 0.99079 1.21763 0.98418 0.95012 0.94783 1.21054 0.93220 1.00292 0.96988 1.20999 0.96874 0.95464 0.99660 1.20858 0.99357 0.97542 0.96102 1.20486 0.95492 0.91525 0.97711 1.98334 1.92901 1.40980 1.73532 0.93924 0.94565 0.94382 0.94011 0.88254 0.93131 0.86136 0.90350 0.90564 0.90822 0.90132 0.84954 0.85273 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.56 37.16 0.36 -2.43 16 2 C -0.13 -2.84 5.39 -26.74 -0.14 -2.98 16 3 C 0.22 5.06 1.70 -68.87 -0.12 4.95 16 4 H 0.00 0.12 6.35 -51.93 -0.33 -0.21 16 5 C -0.49 -13.08 8.34 -34.44 -0.29 -13.37 16 6 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.73 11.29 55.43 0.63 -24.10 16 9 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 13 N -0.67 -13.49 6.06 -101.08 -0.61 -14.10 16 14 C 0.13 2.36 2.96 -67.83 -0.20 2.15 16 15 H 0.10 2.07 7.54 -51.93 -0.39 1.68 16 16 C -0.11 -1.57 6.77 -25.32 -0.17 -1.74 16 17 C -0.08 -1.08 6.47 -26.85 -0.17 -1.25 16 18 C -0.09 -1.33 6.05 -104.17 -0.63 -1.96 16 19 C -0.10 -1.62 5.47 -104.21 -0.57 -2.19 16 20 C -0.10 -1.57 9.68 -39.53 -0.38 -1.96 16 21 C -0.11 -1.52 10.04 -39.63 -0.40 -1.92 16 22 C -0.12 -1.56 9.83 -39.59 -0.39 -1.95 16 23 C -0.03 -0.36 6.32 -39.45 -0.25 -0.61 16 24 Cl -0.09 -1.07 28.71 -51.86 -1.49 -2.56 16 25 H 0.04 0.78 6.94 -51.93 -0.36 0.42 16 26 H 0.04 0.61 6.66 -51.93 -0.35 0.27 16 27 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.04 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 2.55 5.94 -51.93 -0.31 2.24 16 30 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.32 6.05 6.33 -39.29 -0.25 5.80 16 32 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 33 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.13 2.32 5.38 -52.48 -0.28 2.04 16 37 H 0.13 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.13 1.38 8.06 -52.49 -0.42 0.95 16 LS Contribution 316.97 15.07 4.78 4.78 Total: -1.00 -26.90 316.97 -10.36 -37.26 By element: Atomic # 1 Polarization: 11.78 SS G_CDS: -5.19 Total: 6.59 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -3.45 Total: -23.86 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.01 Total: -38.20 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -1.07 SS G_CDS: -1.49 Total: -2.56 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -26.90 -10.36 -37.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.335 kcal (2) G-P(sol) polarization free energy of solvation -26.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.261 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds