Wall clock time and date at job start Tue Mar 31 2020 00:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52993 * 109.47229 * 2 1 4 4 H 1.08999 * 109.47388 * 54.36891 * 3 2 1 5 5 C 1.50704 * 109.47122 * 174.36706 * 3 2 1 6 6 H 1.07992 * 120.00214 * 119.99419 * 5 3 2 7 7 C 1.37884 * 119.99781 * 300.00044 * 5 3 2 8 8 N 1.31510 * 119.99742 * 359.97438 * 7 5 3 9 9 Si 1.86802 * 119.99831 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47108 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46925 * 119.99916 * 9 7 5 12 12 H 1.48493 * 109.47166 * 239.99788 * 9 7 5 13 13 N 1.46902 * 109.47186 * 294.36497 * 3 2 1 14 14 C 1.46902 * 111.00041 * 158.56470 * 13 3 2 15 15 H 1.09002 * 110.26914 * 31.74612 * 14 13 3 16 16 C 1.54343 * 110.30330 * 153.93124 * 14 13 3 17 17 C 1.54347 * 102.39631 * 145.27494 * 16 14 13 18 18 C 1.51370 * 105.16781 * 333.64503 * 17 16 14 19 19 C 1.38240 * 109.76008 * 17.19377 * 18 17 16 20 20 C 1.38463 * 119.85767 * 180.02562 * 19 18 17 21 21 C 1.38147 * 120.24417 * 359.97364 * 20 19 18 22 22 C 1.38194 * 119.94880 * 0.02577 * 21 20 19 23 23 C 1.38265 * 119.91910 * 359.97438 * 22 21 20 24 24 Cl 1.73602 * 119.90405 * 179.97438 * 23 22 21 25 25 H 1.09004 * 109.47284 * 305.78560 * 1 2 3 26 26 H 1.08996 * 109.47339 * 65.78470 * 1 2 3 27 27 H 1.09001 * 109.47915 * 185.78682 * 1 2 3 28 28 H 1.08998 * 109.46932 * 239.99282 * 2 1 3 29 29 H 1.09002 * 109.46887 * 119.99879 * 2 1 3 30 30 H 0.97004 * 119.99378 * 179.97438 * 8 7 5 31 31 H 1.00896 * 110.99846 * 34.61025 * 13 3 2 32 32 H 1.08999 * 110.81998 * 263.49939 * 16 14 13 33 33 H 1.09000 * 110.82561 * 27.04322 * 16 14 13 34 34 H 1.09003 * 110.30048 * 214.72646 * 17 16 14 35 35 H 1.08994 * 110.38684 * 92.60979 * 17 16 14 36 36 H 1.08006 * 119.87839 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.02577 * 180.02562 * 21 20 19 38 38 H 1.08001 * 120.04076 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5967 1.9846 0.8352 5 6 3.5405 1.4447 0.1395 6 1 4.1539 1.8863 -0.6319 7 6 4.1303 0.8828 1.2519 8 7 3.3833 0.3454 2.1915 9 14 5.9904 0.8849 1.4245 10 1 6.5965 1.5458 0.2408 11 1 6.3725 1.6251 2.6538 12 1 6.4806 -0.5137 1.5163 13 7 1.6645 2.0946 -1.2616 14 6 1.6662 3.5567 -1.1194 15 1 2.4225 3.8649 -0.3975 16 6 1.9220 4.2274 -2.4857 17 6 1.0573 5.5027 -2.3959 18 6 -0.0505 5.1622 -1.4221 19 6 0.2994 4.0440 -0.6885 20 6 -0.5694 3.5481 0.2688 21 6 -1.7839 4.1669 0.4937 22 6 -2.1347 5.2848 -0.2390 23 6 -1.2689 5.7820 -1.1956 24 17 -1.7103 7.1860 -2.1163 25 1 -0.3634 0.6009 0.8337 26 1 -0.3634 0.4215 -0.9372 27 1 -0.3635 -1.0224 0.1036 28 1 1.8932 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.7983 -0.0502 2.9739 31 1 0.7684 1.7640 -1.5868 32 1 2.9757 4.4812 -2.6015 33 1 1.5848 3.5872 -3.3009 34 1 0.6402 5.7464 -3.3730 35 1 1.6489 6.3369 -2.0190 36 1 -0.2966 2.6742 0.8419 37 1 -2.4586 3.7773 1.2416 38 1 -3.0836 5.7700 -0.0641 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568181590.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:29 Heat of formation + Delta-G solvation = -7.287543 kcal Electronic energy + Delta-G solvation = -19851.357166 eV Core-core repulsion = 16910.987404 eV Total energy + Delta-G solvation = -2940.369762 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.31743 -38.24139 -37.29096 -36.35502 -34.10918 -32.61152 -31.19713 -29.91178 -28.58155 -26.59739 -24.50486 -23.64089 -22.11278 -21.59791 -21.14245 -18.39311 -17.73904 -17.01698 -16.60273 -16.30973 -16.04230 -15.71132 -15.19342 -14.77524 -14.51457 -14.21461 -13.95475 -13.72706 -13.51482 -13.15814 -12.88237 -12.72941 -12.63624 -12.54085 -12.46296 -12.41242 -12.14720 -11.97007 -11.80962 -11.73100 -11.48791 -11.22288 -10.98754 -10.41997 -9.73778 -9.58281 -8.93060 -8.05414 -6.16425 0.17767 0.27942 1.16183 1.40194 1.43162 1.54038 2.44831 2.61765 3.20304 3.41783 3.52743 3.82051 4.00141 4.17365 4.23664 4.35136 4.45069 4.50105 4.56295 4.58685 4.69973 4.77831 4.85305 4.97138 5.03904 5.12348 5.14113 5.22110 5.30675 5.31755 5.36970 5.44091 5.58404 5.66151 5.79117 5.83597 5.92081 6.39158 6.51468 6.97432 7.00488 7.52535 8.97772 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023592 B = 0.004981 C = 0.004538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.558066 B = 5619.922330 C = 6168.740783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.121 4.121 3 C 0.227 3.773 4 H -0.023 1.023 5 C -0.510 4.510 6 H 0.050 0.950 7 C 0.012 3.988 8 N -0.918 5.918 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.284 1.284 12 H -0.282 1.282 13 N -0.673 5.673 14 C 0.128 3.872 15 H 0.065 0.935 16 C -0.098 4.098 17 C -0.073 4.073 18 C -0.092 4.092 19 C -0.120 4.120 20 C -0.115 4.115 21 C -0.108 4.108 22 C -0.111 4.111 23 C -0.032 4.032 24 Cl -0.068 7.068 25 H 0.040 0.960 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.033 0.967 29 H 0.067 0.933 30 H 0.259 0.741 31 H 0.328 0.672 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.110 0.890 37 H 0.155 0.845 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.899 10.086 -6.727 16.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.160 4.160 3 C 0.119 3.881 4 H -0.006 1.006 5 C -0.549 4.549 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.559 5.559 9 Si 0.778 3.222 10 H -0.195 1.195 11 H -0.210 1.210 12 H -0.207 1.207 13 N -0.303 5.303 14 C 0.018 3.982 15 H 0.083 0.917 16 C -0.136 4.136 17 C -0.110 4.110 18 C -0.094 4.094 19 C -0.122 4.122 20 C -0.133 4.133 21 C -0.125 4.125 22 C -0.129 4.129 23 C -0.058 4.058 24 Cl -0.039 7.039 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.052 0.948 29 H 0.086 0.914 30 H 0.068 0.932 31 H 0.146 0.854 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.111 0.889 35 H 0.108 0.892 36 H 0.128 0.872 37 H 0.173 0.827 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.254 10.075 -6.912 15.951 hybrid contribution 0.322 -0.123 1.101 1.154 sum -9.932 9.951 -5.811 15.213 Atomic orbital electron populations 1.21758 0.96370 1.00991 1.00331 1.21583 0.94120 0.99207 1.01058 1.18944 0.93781 0.90464 0.84888 1.00562 1.21520 0.92973 1.36398 1.04017 0.93201 1.25621 1.01917 0.95436 0.95674 1.69999 1.35994 1.40038 1.09867 0.85608 0.81269 0.77608 0.77752 1.19475 1.20960 1.20749 1.60747 1.34074 1.03261 1.32196 1.21142 0.91051 0.88842 0.97211 0.91657 1.22280 1.00434 0.95049 0.95868 1.21080 0.93407 0.98454 0.98084 1.20579 0.94423 0.95369 0.99007 1.21576 0.97864 0.96493 0.96258 1.21033 0.94647 1.00371 0.97263 1.21254 0.96040 0.95302 0.99951 1.21214 1.00105 0.96789 0.94836 1.20627 0.95186 0.92018 0.97994 1.98342 1.92670 1.39827 1.73078 0.94101 0.92845 0.92652 0.94768 0.91422 0.93177 0.85366 0.90014 0.90191 0.88916 0.89165 0.87168 0.82735 0.82394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.56 71.98 0.69 -4.37 16 2 C -0.12 -5.63 5.39 30.59 0.16 -5.46 16 3 C 0.23 11.06 1.70 44.17 0.08 11.14 16 4 H -0.02 -1.24 6.35 -2.39 -0.02 -1.26 16 5 C -0.51 -27.97 8.34 25.60 0.21 -27.75 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.64 5.29 84.66 0.45 1.09 16 8 N -0.92 -52.26 11.29 21.45 0.24 -52.02 16 9 Si 0.95 43.96 29.54 68.60 2.03 45.99 16 10 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 13 N -0.67 -27.65 6.06 -473.69 -2.87 -30.52 16 14 C 0.13 4.74 2.96 44.84 0.13 4.87 16 15 H 0.07 2.84 7.54 -2.39 -0.02 2.82 16 16 C -0.10 -2.88 6.77 31.51 0.21 -2.66 16 17 C -0.07 -1.83 6.47 30.52 0.20 -1.63 16 18 C -0.09 -2.64 6.05 -19.57 -0.12 -2.76 16 19 C -0.12 -4.00 5.47 -19.60 -0.11 -4.10 16 20 C -0.11 -3.71 9.68 22.30 0.22 -3.50 16 21 C -0.11 -2.73 10.04 22.24 0.22 -2.50 16 22 C -0.11 -2.56 9.83 22.27 0.22 -2.35 16 23 C -0.03 -0.81 6.32 22.35 0.14 -0.67 16 24 Cl -0.07 -1.48 28.71 -2.72 -0.08 -1.56 16 25 H 0.04 1.51 6.94 -2.38 -0.02 1.49 16 26 H 0.05 1.77 6.66 -2.39 -0.02 1.75 16 27 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 29 H 0.07 3.59 5.94 -2.39 -0.01 3.58 16 30 H 0.26 14.09 8.31 -92.71 -0.77 13.32 16 31 H 0.33 12.46 6.33 -89.70 -0.57 11.90 16 32 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.08 2.28 8.09 -2.39 -0.02 2.26 16 34 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.11 4.02 5.38 -2.91 -0.02 4.01 16 37 H 0.16 3.05 8.06 -2.91 -0.02 3.02 16 38 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -59.08 316.97 2.53 -56.55 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: 0.50 Total: 22.22 kcal Atomic # 6 Polarization: -43.36 SS G_CDS: 2.71 Total: -40.66 kcal Atomic # 7 Polarization: -79.92 SS G_CDS: -2.63 Total: -82.54 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -59.08 2.53 -56.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181590.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.262 kcal (2) G-P(sol) polarization free energy of solvation -59.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds