Wall clock time and date at job start Tue Mar 31 2020 00:55:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46804 * 2 1 4 4 H 1.09006 * 109.46944 * 180.85421 * 3 2 1 5 5 C 1.50698 * 109.47526 * 60.85868 * 3 2 1 6 6 H 1.07998 * 119.99811 * 243.93864 * 5 3 2 7 7 C 1.37870 * 120.00278 * 63.92963 * 5 3 2 8 8 N 1.31517 * 120.00255 * 10.06931 * 7 5 3 9 9 Si 1.86803 * 120.00349 * 190.07084 * 7 5 3 10 10 H 1.48509 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47174 * 240.00205 * 9 7 5 12 12 H 1.48505 * 109.47322 * 119.99923 * 9 7 5 13 13 N 1.46903 * 109.47215 * 300.85201 * 3 2 1 14 14 C 1.46892 * 111.00164 * 273.26518 * 13 3 2 15 15 H 1.08997 * 110.26899 * 31.55743 * 14 13 3 16 16 C 1.54340 * 110.30433 * 153.73855 * 14 13 3 17 17 C 1.54349 * 102.39543 * 145.27476 * 16 14 13 18 18 C 1.51365 * 105.17017 * 333.64800 * 17 16 14 19 19 C 1.38242 * 109.75844 * 17.19286 * 18 17 16 20 20 C 1.38460 * 119.85598 * 179.97438 * 19 18 17 21 21 C 1.38148 * 120.24288 * 359.97438 * 20 19 18 22 22 C 1.38189 * 119.95365 * 0.02562 * 21 20 19 23 23 C 1.38267 * 119.91670 * 359.97438 * 22 21 20 24 24 Cl 1.73607 * 119.90554 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.46553 * 183.19150 * 1 2 3 26 26 H 1.08997 * 109.47378 * 303.18763 * 1 2 3 27 27 H 1.09001 * 109.46898 * 63.19591 * 1 2 3 28 28 H 1.08997 * 109.47270 * 239.99781 * 2 1 3 29 29 H 1.09006 * 109.47347 * 119.99788 * 2 1 3 30 30 H 0.97007 * 119.99714 * 2.23531 * 8 7 5 31 31 H 1.00895 * 110.99756 * 149.30569 * 13 3 2 32 32 H 1.08997 * 110.82578 * 263.49893 * 16 14 13 33 33 H 1.08997 * 110.82169 * 27.05006 * 16 14 13 34 34 H 1.09006 * 110.30205 * 214.72801 * 17 16 14 35 35 H 1.08999 * 110.38572 * 92.61918 * 17 16 14 36 36 H 1.08001 * 119.87457 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.02675 * 179.97438 * 21 20 19 38 38 H 1.07994 * 120.04437 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0153 5 6 1.5550 2.1468 1.2409 6 1 0.8814 2.9867 1.1567 7 6 1.9712 1.7188 2.4837 8 7 2.9375 0.8323 2.5844 9 14 1.1627 2.3979 4.0246 10 1 0.1101 3.3733 3.6425 11 1 2.1848 3.0749 4.8626 12 1 0.5500 1.2851 4.7937 13 7 1.5335 2.1409 -1.1890 14 6 2.4230 1.9345 -2.3396 15 1 2.8973 0.9550 -2.2792 16 6 1.6327 2.0688 -3.6585 17 6 2.6702 2.7132 -4.6023 18 6 3.6146 3.4713 -3.6943 19 6 3.4727 3.0238 -2.3940 20 6 4.2427 3.5790 -1.3861 21 6 5.1523 4.5777 -1.6753 22 6 5.2951 5.0259 -2.9747 23 6 4.5273 4.4731 -3.9830 24 17 4.7064 5.0367 -5.6152 25 1 -0.3633 -1.0262 0.0572 26 1 -0.3634 0.5625 0.8600 27 1 -0.3633 0.4634 -0.9173 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.3794 0.5037 1.7857 31 1 1.4047 3.1242 -1.0033 32 1 1.3274 1.0902 -4.0287 33 1 0.7695 2.7215 -3.5282 34 1 2.1788 3.3981 -5.2934 35 1 3.2112 1.9441 -5.1535 36 1 4.1318 3.2299 -0.3701 37 1 5.7509 5.0086 -0.8863 38 1 6.0060 5.8062 -3.2025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000568181593.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:41 Heat of formation + Delta-G solvation = 1.657489 kcal Electronic energy + Delta-G solvation = -19830.904239 eV Core-core repulsion = 16890.922363 eV Total energy + Delta-G solvation = -2939.981876 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.16540 -36.98631 -36.17036 -35.10974 -32.34281 -30.98089 -29.76011 -28.84454 -26.58718 -24.49664 -23.46617 -22.53674 -21.01505 -20.34098 -19.28671 -17.24662 -16.37405 -15.62776 -15.18081 -15.00034 -14.20253 -13.87318 -13.74425 -13.62182 -13.23617 -13.12669 -12.64523 -12.28896 -11.97914 -11.72351 -11.57036 -11.40015 -11.20536 -11.05355 -10.95680 -10.81431 -10.76531 -10.58375 -10.21964 -10.14616 -9.90597 -9.73310 -8.68843 -8.52162 -8.49621 -8.30252 -7.42559 -6.40456 -4.10620 1.31120 1.37151 2.19408 3.41692 3.44148 3.57945 3.74037 4.47661 4.50162 4.66914 5.04770 5.08064 5.24622 5.32459 5.39002 5.46038 5.54782 5.66847 5.82783 5.90092 6.05825 6.09009 6.16619 6.27370 6.34031 6.39423 6.42687 6.53964 6.61372 6.73758 6.95750 6.96005 7.05163 7.22112 7.45186 7.51260 7.83073 8.06075 8.46191 8.54058 8.82496 9.59120 10.96503 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.005031 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.137273 B = 5564.420151 C = 6374.251378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.107 4.107 3 C 0.203 3.797 4 H -0.004 1.004 5 C -0.596 4.596 6 H 0.053 0.947 7 C 0.027 3.973 8 N -0.908 5.908 9 Si 1.066 2.934 10 H -0.289 1.289 11 H -0.290 1.290 12 H -0.286 1.286 13 N -0.666 5.666 14 C 0.124 3.876 15 H 0.086 0.914 16 C -0.105 4.105 17 C -0.080 4.080 18 C -0.089 4.089 19 C -0.102 4.102 20 C -0.090 4.090 21 C -0.111 4.111 22 C -0.117 4.117 23 C -0.027 4.027 24 Cl -0.086 7.086 25 H 0.017 0.983 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.018 0.982 29 H 0.059 0.941 30 H 0.271 0.729 31 H 0.338 0.662 32 H 0.076 0.924 33 H 0.079 0.921 34 H 0.074 0.926 35 H 0.079 0.921 36 H 0.137 0.863 37 H 0.131 0.869 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.365 5.348 -12.736 14.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.145 4.145 3 C 0.095 3.905 4 H 0.013 0.987 5 C -0.634 4.634 6 H 0.072 0.928 7 C -0.178 4.178 8 N -0.544 5.544 9 Si 0.895 3.105 10 H -0.215 1.215 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.295 5.295 14 C 0.013 3.987 15 H 0.104 0.896 16 C -0.143 4.143 17 C -0.117 4.117 18 C -0.090 4.090 19 C -0.104 4.104 20 C -0.108 4.108 21 C -0.129 4.129 22 C -0.136 4.136 23 C -0.054 4.054 24 Cl -0.057 7.057 25 H 0.036 0.964 26 H 0.078 0.922 27 H 0.067 0.933 28 H 0.036 0.964 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.157 0.843 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.098 0.902 36 H 0.154 0.846 37 H 0.149 0.851 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 1.921 4.766 -11.377 12.483 hybrid contribution 0.965 0.772 -1.497 1.941 sum 2.886 5.538 -12.874 14.308 Atomic orbital electron populations 1.21426 0.96498 0.97773 1.02010 1.21500 0.96325 0.98343 0.98381 1.19296 0.92481 0.91318 0.87433 0.98686 1.21980 1.31947 1.17806 0.91674 0.92837 1.25644 0.95435 0.95523 1.01242 1.70752 1.20912 1.29501 1.33257 0.83591 0.75704 0.75914 0.75286 1.21476 1.21632 1.21280 1.60733 1.46470 1.16826 1.05502 1.21248 0.89080 0.95237 0.93121 0.89617 1.22330 0.97551 1.01127 0.93310 1.21076 0.95247 0.98348 0.97048 1.20409 0.96841 0.95535 0.96236 1.21619 0.97865 0.98470 0.92462 1.21073 0.94102 0.95384 1.00222 1.21030 0.98828 0.97290 0.95730 1.20887 0.99799 1.00847 0.92064 1.20466 1.00523 0.99006 0.85388 1.98334 1.97054 1.88801 1.21544 0.96434 0.92203 0.93314 0.96358 0.92246 0.91821 0.84344 0.90571 0.90275 0.90703 0.90232 0.84560 0.85124 0.85271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.53 9.52 37.16 0.35 -2.18 16 2 C -0.11 -2.42 5.49 -26.73 -0.15 -2.56 16 3 C 0.20 4.66 1.48 -68.86 -0.10 4.56 16 4 H 0.00 -0.11 5.88 -51.93 -0.31 -0.41 16 5 C -0.60 -15.30 7.23 -34.44 -0.25 -15.55 16 6 H 0.05 1.41 7.65 -52.49 -0.40 1.01 16 7 C 0.03 0.71 5.18 -17.82 -0.09 0.62 16 8 N -0.91 -25.77 12.89 55.43 0.71 -25.06 16 9 Si 1.07 24.32 29.92 -169.99 -5.09 19.23 16 10 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.67 -13.06 5.34 -101.08 -0.54 -13.60 16 14 C 0.12 2.10 2.96 -67.84 -0.20 1.90 16 15 H 0.09 1.54 7.33 -51.93 -0.38 1.16 16 16 C -0.11 -1.46 6.77 -25.32 -0.17 -1.63 16 17 C -0.08 -1.02 6.47 -26.85 -0.17 -1.20 16 18 C -0.09 -1.32 6.05 -104.17 -0.63 -1.95 16 19 C -0.10 -1.69 5.47 -104.21 -0.57 -2.26 16 20 C -0.09 -1.52 9.69 -39.53 -0.38 -1.90 16 21 C -0.11 -1.59 10.04 -39.63 -0.40 -1.99 16 22 C -0.12 -1.57 9.83 -39.59 -0.39 -1.96 16 23 C -0.03 -0.39 6.32 -39.45 -0.25 -0.64 16 24 Cl -0.09 -1.06 28.71 -51.86 -1.49 -2.55 16 25 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 1.37 7.13 -51.93 -0.37 1.00 16 27 H 0.05 0.98 7.68 -51.93 -0.40 0.58 16 28 H 0.02 0.38 7.65 -51.93 -0.40 -0.02 16 29 H 0.06 1.49 6.38 -51.93 -0.33 1.16 16 30 H 0.27 7.67 6.21 -40.82 -0.25 7.42 16 31 H 0.34 6.86 7.90 -39.29 -0.31 6.55 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 33 H 0.08 1.12 8.09 -51.93 -0.42 0.70 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.14 2.63 6.80 -52.49 -0.36 2.27 16 37 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 38 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 318.07 15.07 4.79 4.79 Total: -1.00 -26.84 318.07 -10.27 -37.10 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -5.26 Total: 6.81 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: -3.40 Total: -26.73 kcal Atomic # 7 Polarization: -38.84 SS G_CDS: 0.17 Total: -38.66 kcal Atomic # 14 Polarization: 24.32 SS G_CDS: -5.09 Total: 19.23 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.49 Total: -2.55 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.84 -10.27 -37.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181593.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.762 kcal (2) G-P(sol) polarization free energy of solvation -26.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds