Wall clock time and date at job start Tue Mar 31 2020 00:55:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.46804 * 2 1 4 4 H 1.09006 * 109.46944 * 180.85421 * 3 2 1 5 5 C 1.50698 * 109.47526 * 60.85868 * 3 2 1 6 6 H 1.07998 * 119.99811 * 243.93864 * 5 3 2 7 7 C 1.37870 * 120.00278 * 63.92963 * 5 3 2 8 8 N 1.31517 * 120.00255 * 10.06931 * 7 5 3 9 9 Si 1.86803 * 120.00349 * 190.07084 * 7 5 3 10 10 H 1.48509 * 109.47000 * 0.02562 * 9 7 5 11 11 H 1.48493 * 109.47174 * 240.00205 * 9 7 5 12 12 H 1.48505 * 109.47322 * 119.99923 * 9 7 5 13 13 N 1.46903 * 109.47215 * 300.85201 * 3 2 1 14 14 C 1.46892 * 111.00164 * 273.26518 * 13 3 2 15 15 H 1.08997 * 110.26899 * 31.55743 * 14 13 3 16 16 C 1.54340 * 110.30433 * 153.73855 * 14 13 3 17 17 C 1.54349 * 102.39543 * 145.27476 * 16 14 13 18 18 C 1.51365 * 105.17017 * 333.64800 * 17 16 14 19 19 C 1.38242 * 109.75844 * 17.19286 * 18 17 16 20 20 C 1.38460 * 119.85598 * 179.97438 * 19 18 17 21 21 C 1.38148 * 120.24288 * 359.97438 * 20 19 18 22 22 C 1.38189 * 119.95365 * 0.02562 * 21 20 19 23 23 C 1.38267 * 119.91670 * 359.97438 * 22 21 20 24 24 Cl 1.73607 * 119.90554 * 179.97438 * 23 22 21 25 25 H 1.09006 * 109.46553 * 183.19150 * 1 2 3 26 26 H 1.08997 * 109.47378 * 303.18763 * 1 2 3 27 27 H 1.09001 * 109.46898 * 63.19591 * 1 2 3 28 28 H 1.08997 * 109.47270 * 239.99781 * 2 1 3 29 29 H 1.09006 * 109.47347 * 119.99788 * 2 1 3 30 30 H 0.97007 * 119.99714 * 2.23531 * 8 7 5 31 31 H 1.00895 * 110.99756 * 149.30569 * 13 3 2 32 32 H 1.08997 * 110.82578 * 263.49893 * 16 14 13 33 33 H 1.08997 * 110.82169 * 27.05006 * 16 14 13 34 34 H 1.09006 * 110.30205 * 214.72801 * 17 16 14 35 35 H 1.08999 * 110.38572 * 92.61918 * 17 16 14 36 36 H 1.08001 * 119.87457 * 179.97438 * 20 19 18 37 37 H 1.08003 * 120.02675 * 179.97438 * 21 20 19 38 38 H 1.07994 * 120.04437 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 3.1299 1.4426 -0.0153 5 6 1.5550 2.1468 1.2409 6 1 0.8814 2.9867 1.1567 7 6 1.9712 1.7188 2.4837 8 7 2.9375 0.8323 2.5844 9 14 1.1627 2.3979 4.0246 10 1 0.1101 3.3733 3.6425 11 1 2.1848 3.0749 4.8626 12 1 0.5500 1.2851 4.7937 13 7 1.5335 2.1409 -1.1890 14 6 2.4230 1.9345 -2.3396 15 1 2.8973 0.9550 -2.2792 16 6 1.6327 2.0688 -3.6585 17 6 2.6702 2.7132 -4.6023 18 6 3.6146 3.4713 -3.6943 19 6 3.4727 3.0238 -2.3940 20 6 4.2427 3.5790 -1.3861 21 6 5.1523 4.5777 -1.6753 22 6 5.2951 5.0259 -2.9747 23 6 4.5273 4.4731 -3.9830 24 17 4.7064 5.0367 -5.6152 25 1 -0.3633 -1.0262 0.0572 26 1 -0.3634 0.5625 0.8600 27 1 -0.3633 0.4634 -0.9173 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.3794 0.5037 1.7857 31 1 1.4047 3.1242 -1.0033 32 1 1.3274 1.0902 -4.0287 33 1 0.7695 2.7215 -3.5282 34 1 2.1788 3.3981 -5.2934 35 1 3.2112 1.9441 -5.1535 36 1 4.1318 3.2299 -0.3701 37 1 5.7509 5.0086 -0.8863 38 1 6.0060 5.8062 -3.2025 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000568181593.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:40 Heat of formation + Delta-G solvation = -11.328622 kcal Electronic energy + Delta-G solvation = -19831.467359 eV Core-core repulsion = 16890.922363 eV Total energy + Delta-G solvation = -2940.544996 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 3.62 seconds Orbital eigenvalues (eV) -41.37962 -38.41886 -37.40712 -36.48807 -34.06155 -32.63447 -31.13290 -30.01105 -28.18767 -26.17779 -25.28987 -23.70730 -22.23266 -21.68579 -21.01315 -19.02821 -17.73939 -16.88495 -16.43334 -16.24331 -15.74906 -15.63889 -15.35243 -15.18988 -14.57106 -14.31450 -14.16135 -13.84153 -13.53500 -13.13865 -12.84063 -12.72991 -12.65320 -12.49031 -12.37203 -12.24912 -12.05443 -11.94575 -11.86321 -11.79587 -11.63416 -11.47889 -10.61354 -10.32484 -9.82413 -9.63974 -9.04476 -8.54998 -6.24241 0.11706 0.21281 1.10811 1.54522 1.61249 1.77592 2.54320 2.58410 3.23886 3.33645 3.43039 3.73620 3.94864 4.10143 4.18277 4.23695 4.35916 4.45137 4.51188 4.57110 4.61847 4.76550 4.78799 4.91478 4.99895 5.04340 5.08246 5.20446 5.23592 5.29894 5.38361 5.42123 5.50607 5.60600 5.72594 5.76863 5.93656 6.13455 6.52950 6.62844 6.83466 7.52874 8.82082 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023740 B = 0.005031 C = 0.004392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.137273 B = 5564.420151 C = 6374.251378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.103 4.103 3 C 0.212 3.788 4 H -0.034 1.034 5 C -0.593 4.593 6 H 0.046 0.954 7 C -0.019 4.019 8 N -0.934 5.934 9 Si 1.107 2.893 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.659 5.659 14 C 0.121 3.879 15 H 0.069 0.931 16 C -0.095 4.095 17 C -0.073 4.073 18 C -0.090 4.090 19 C -0.123 4.123 20 C -0.113 4.113 21 C -0.111 4.111 22 C -0.109 4.109 23 C -0.032 4.032 24 Cl -0.065 7.065 25 H 0.037 0.963 26 H 0.037 0.963 27 H 0.060 0.940 28 H 0.032 0.968 29 H 0.029 0.971 30 H 0.258 0.742 31 H 0.333 0.667 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.092 0.908 35 H 0.095 0.905 36 H 0.099 0.901 37 H 0.149 0.851 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.931 6.450 -14.715 16.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.142 4.142 3 C 0.103 3.897 4 H -0.016 1.016 5 C -0.632 4.632 6 H 0.064 0.936 7 C -0.219 4.219 8 N -0.571 5.571 9 Si 0.931 3.069 10 H -0.199 1.199 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.287 5.287 14 C 0.010 3.990 15 H 0.087 0.913 16 C -0.133 4.133 17 C -0.110 4.110 18 C -0.091 4.091 19 C -0.125 4.125 20 C -0.131 4.131 21 C -0.129 4.129 22 C -0.128 4.128 23 C -0.059 4.059 24 Cl -0.036 7.036 25 H 0.056 0.944 26 H 0.056 0.944 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.048 0.952 30 H 0.068 0.932 31 H 0.150 0.850 32 H 0.110 0.890 33 H 0.097 0.903 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.118 0.882 37 H 0.166 0.834 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 1.482 5.872 -13.388 14.694 hybrid contribution 1.167 0.475 -0.982 1.597 sum 2.649 6.347 -14.369 15.930 Atomic orbital electron populations 1.21310 0.94936 0.98852 1.01529 1.21405 0.97574 0.97649 0.97552 1.19052 0.90669 0.91867 0.88115 1.01609 1.22211 1.30852 1.17301 0.92825 0.93619 1.26832 0.95340 0.95378 1.04321 1.70858 1.22396 1.31253 1.32603 0.83045 0.75412 0.75812 0.72596 1.19857 1.21166 1.20922 1.60707 1.47080 1.16045 1.04898 1.21338 0.89480 0.94777 0.93402 0.91255 1.22284 0.97372 1.02202 0.91479 1.21103 0.94558 0.98737 0.96614 1.20620 0.97200 0.95634 0.95683 1.21547 0.98434 0.99000 0.93478 1.20942 0.96168 0.97274 0.98765 1.21214 0.98169 0.96442 0.97066 1.21200 0.99598 1.00777 0.91191 1.20618 1.00052 0.98581 0.86616 1.98343 1.96926 1.88464 1.19857 0.94381 0.94373 0.92123 0.94978 0.95214 0.93161 0.84965 0.88998 0.90304 0.88947 0.88673 0.88241 0.83354 0.82378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.55 9.52 71.98 0.69 -3.86 16 2 C -0.10 -4.76 5.49 30.59 0.17 -4.59 16 3 C 0.21 10.11 1.48 44.17 0.07 10.18 16 4 H -0.03 -1.78 5.88 -2.38 -0.01 -1.80 16 5 C -0.59 -31.40 7.23 25.60 0.19 -31.21 16 6 H 0.05 2.45 7.65 -2.91 -0.02 2.43 16 7 C -0.02 -1.05 5.18 84.65 0.44 -0.62 16 8 N -0.93 -54.96 12.89 21.45 0.28 -54.68 16 9 Si 1.11 49.54 29.92 68.60 2.05 51.59 16 10 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 11 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 13 N -0.66 -26.30 5.34 -473.72 -2.53 -28.83 16 14 C 0.12 4.09 2.96 44.84 0.13 4.22 16 15 H 0.07 2.55 7.33 -2.39 -0.02 2.53 16 16 C -0.10 -2.47 6.77 31.51 0.21 -2.25 16 17 C -0.07 -1.67 6.47 30.52 0.20 -1.47 16 18 C -0.09 -2.53 6.05 -19.57 -0.12 -2.64 16 19 C -0.12 -4.09 5.47 -19.60 -0.11 -4.20 16 20 C -0.11 -3.98 9.69 22.30 0.22 -3.76 16 21 C -0.11 -3.13 10.04 22.24 0.22 -2.91 16 22 C -0.11 -2.69 9.83 22.26 0.22 -2.47 16 23 C -0.03 -0.83 6.32 22.35 0.14 -0.69 16 24 Cl -0.06 -1.40 28.71 -2.72 -0.08 -1.48 16 25 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.04 1.73 7.13 -2.39 -0.02 1.72 16 27 H 0.06 2.36 7.68 -2.39 -0.02 2.34 16 28 H 0.03 1.36 7.65 -2.39 -0.02 1.34 16 29 H 0.03 1.53 6.38 -2.38 -0.02 1.52 16 30 H 0.26 15.45 6.21 -92.70 -0.58 14.88 16 31 H 0.33 13.82 7.90 -89.70 -0.71 13.11 16 32 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 33 H 0.08 2.06 8.09 -2.39 -0.02 2.04 16 34 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 35 H 0.10 1.92 8.14 -2.39 -0.02 1.91 16 36 H 0.10 4.19 6.80 -2.91 -0.02 4.17 16 37 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 38 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -59.02 318.07 2.93 -56.09 By element: Atomic # 1 Polarization: 23.04 SS G_CDS: 0.55 Total: 23.59 kcal Atomic # 6 Polarization: -48.95 SS G_CDS: 2.66 Total: -46.29 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -2.25 Total: -83.51 kcal Atomic # 14 Polarization: 49.54 SS G_CDS: 2.05 Total: 51.59 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.08 Total: -1.48 kcal Total: -59.02 2.93 -56.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000568181593.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.757 kcal (2) G-P(sol) polarization free energy of solvation -59.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds