Wall clock time and date at job start Tue Mar 31 2020 00:55:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 H 1.08992 * 109.47542 * 184.75090 * 3 2 1 5 5 C 1.50700 * 109.47004 * 304.75364 * 3 2 1 6 6 H 1.07998 * 120.00060 * 119.99979 * 5 3 2 7 7 C 1.37875 * 119.99872 * 299.99967 * 5 3 2 8 8 N 1.31511 * 120.00066 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99980 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47299 * 59.99648 * 9 7 5 11 11 H 1.48494 * 109.47177 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46879 * 300.00007 * 9 7 5 13 13 N 1.46904 * 109.47007 * 64.75003 * 3 2 1 14 14 C 1.46896 * 110.99703 * 85.97834 * 13 3 2 15 15 H 1.09005 * 110.27388 * 324.41298 * 14 13 3 16 16 C 1.54346 * 110.30405 * 202.23340 * 14 13 3 17 17 C 1.54345 * 102.39577 * 267.42816 * 16 14 13 18 18 C 1.51378 * 105.16518 * 333.64126 * 17 16 14 19 19 C 1.38515 * 130.36743 * 197.17331 * 18 17 16 20 20 C 1.38081 * 120.22921 * 180.02562 * 19 18 17 21 21 C 1.38369 * 119.92211 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.04709 * 180.02562 * 21 20 19 23 23 C 1.38227 * 119.90770 * 0.02562 * 21 20 19 24 24 C 1.38228 * 109.76005 * 17.20280 * 18 17 16 25 25 H 1.09000 * 109.47017 * 182.78732 * 1 2 3 26 26 H 1.08996 * 109.47380 * 302.78587 * 1 2 3 27 27 H 1.08997 * 109.47116 * 62.78841 * 1 2 3 28 28 H 1.08999 * 109.47547 * 240.00201 * 2 1 3 29 29 H 1.08999 * 109.46974 * 119.99734 * 2 1 3 30 30 H 0.96999 * 119.99961 * 179.97438 * 8 7 5 31 31 H 1.00901 * 111.00268 * 322.02371 * 13 3 2 32 32 H 1.08997 * 110.82101 * 25.65364 * 16 14 13 33 33 H 1.09000 * 110.82374 * 149.19877 * 16 14 13 34 34 H 1.09002 * 110.30568 * 214.72023 * 17 16 14 35 35 H 1.08992 * 110.38732 * 92.60394 * 17 16 14 36 36 H 1.07995 * 119.88485 * 0.04012 * 19 18 17 37 37 H 1.08001 * 120.04000 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.89785 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4438 -0.0851 5 6 1.4438 2.1861 -1.1674 6 1 0.8335 3.0604 -0.9959 7 6 1.6775 1.7501 -2.4543 8 7 2.4212 0.6857 -2.6632 9 14 0.9391 2.6722 -3.9014 10 1 1.4346 4.0721 -3.9013 11 1 1.3375 2.0068 -5.1677 12 1 -0.5414 2.6711 -3.7856 13 7 1.6462 2.1011 1.2527 14 6 2.6285 1.8437 2.3141 15 1 3.0316 0.8354 2.2192 16 6 1.9803 2.0352 3.7017 17 6 2.2968 3.5132 4.0141 18 6 3.5551 3.8227 3.2315 19 6 4.4610 4.8621 3.3638 20 6 5.5536 4.9432 2.5234 21 6 5.7446 3.9836 1.5451 22 17 7.1175 4.0820 0.4871 23 6 4.8407 2.9464 1.4112 24 6 3.7456 2.8636 2.2545 25 1 -0.3633 -1.0265 0.0500 26 1 -0.3634 0.5564 0.8639 27 1 -0.3633 0.4699 -0.9139 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5853 0.3788 -3.5686 31 1 0.7221 1.8131 1.5377 32 1 0.9038 1.8715 3.6524 33 1 2.4401 1.3764 4.4384 34 1 2.4735 3.6447 5.0817 35 1 1.4793 4.1544 3.6848 36 1 4.3125 5.6115 4.1271 37 1 6.2579 5.7552 2.6291 38 1 4.9902 2.1972 0.6478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574581584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:45 Heat of formation + Delta-G solvation = 10.456974 kcal Electronic energy + Delta-G solvation = -19849.459874 eV Core-core repulsion = 16909.859573 eV Total energy + Delta-G solvation = -2939.600302 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.97884 -36.99720 -36.07480 -34.65925 -32.08555 -31.03389 -29.76014 -28.51409 -26.66749 -25.00081 -23.27728 -22.59356 -20.77093 -20.29110 -19.19369 -16.37208 -15.98991 -15.57182 -15.22201 -14.91445 -14.55572 -14.21228 -13.53711 -13.27859 -13.06095 -12.99061 -12.58176 -12.46579 -11.93053 -11.68669 -11.44047 -11.27254 -11.16531 -10.94290 -10.85446 -10.68172 -10.57743 -10.51436 -10.41204 -9.98612 -9.75527 -9.56414 -8.96429 -8.57028 -8.32167 -8.15265 -7.27040 -5.95856 -3.96950 1.45988 1.61309 2.41564 3.35456 3.39925 3.43451 3.90072 4.46229 4.62550 4.81658 5.15963 5.19603 5.23642 5.36219 5.38342 5.52327 5.71031 5.82031 5.91850 6.00275 6.04885 6.14171 6.29694 6.31134 6.34312 6.38664 6.49927 6.55003 6.57328 6.86929 6.95508 7.09004 7.25679 7.28077 7.47877 7.69694 7.90044 8.28287 8.52272 8.61087 9.07861 9.66574 11.11185 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.006725 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.531378 B = 4162.366475 C = 5447.925822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.147 4.147 3 C 0.216 3.784 4 H 0.034 0.966 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.058 3.942 8 N -0.896 5.896 9 Si 0.891 3.109 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.279 1.279 13 N -0.671 5.671 14 C 0.121 3.879 15 H 0.047 0.953 16 C -0.121 4.121 17 C -0.072 4.072 18 C -0.087 4.087 19 C -0.105 4.105 20 C -0.117 4.117 21 C -0.036 4.036 22 Cl -0.080 7.080 23 C -0.080 4.080 24 C -0.048 4.048 25 H 0.022 0.978 26 H 0.030 0.970 27 H 0.065 0.935 28 H 0.093 0.907 29 H 0.010 0.990 30 H 0.259 0.741 31 H 0.331 0.669 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.239 3.941 12.728 13.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.186 4.186 3 C 0.109 3.891 4 H 0.052 0.948 5 C -0.526 4.526 6 H 0.078 0.922 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.719 3.281 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.204 1.204 13 N -0.304 5.304 14 C 0.010 3.990 15 H 0.065 0.935 16 C -0.159 4.159 17 C -0.109 4.109 18 C -0.088 4.088 19 C -0.124 4.124 20 C -0.136 4.136 21 C -0.062 4.062 22 Cl -0.051 7.051 23 C -0.099 4.099 24 C -0.049 4.049 25 H 0.041 0.959 26 H 0.049 0.951 27 H 0.084 0.916 28 H 0.112 0.888 29 H 0.029 0.971 30 H 0.069 0.931 31 H 0.151 0.849 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.102 0.898 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.688 4.438 12.296 13.583 hybrid contribution -0.344 -0.438 -0.972 1.120 sum 3.345 4.000 11.324 12.467 Atomic orbital electron populations 1.21556 0.97674 0.97914 1.01308 1.22128 0.95007 1.01210 1.00297 1.19247 0.96019 0.88404 0.85465 0.94780 1.20990 1.30575 1.11400 0.89593 0.92198 1.24881 0.95544 0.95145 0.98656 1.69857 1.38847 1.23913 1.20971 0.86668 0.79470 0.80097 0.81817 1.20359 1.21517 1.20425 1.60821 1.03030 1.63373 1.03177 1.20889 0.91573 0.94745 0.91748 0.93509 1.22477 1.01095 0.96026 0.96328 1.20949 0.94662 0.96855 0.98397 1.20656 0.95955 0.94719 0.97452 1.20419 0.94047 0.98078 0.99820 1.20781 0.98864 0.98547 0.95437 1.20682 0.91643 0.98436 0.95486 1.98346 1.42974 1.98096 1.65696 1.20615 0.92889 0.97660 0.98747 1.20462 0.93727 0.96960 0.93766 0.95887 0.95135 0.91604 0.88820 0.97132 0.93084 0.84887 0.90353 0.91113 0.91340 0.89767 0.85893 0.85440 0.84997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.62 9.39 37.16 0.35 -2.27 16 2 C -0.15 -3.34 5.50 -26.73 -0.15 -3.48 16 3 C 0.22 5.16 2.17 -68.86 -0.15 5.01 16 4 H 0.03 0.91 6.48 -51.93 -0.34 0.57 16 5 C -0.49 -13.00 7.41 -34.44 -0.26 -13.26 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.58 5.28 -17.82 -0.09 1.49 16 8 N -0.90 -25.10 11.37 55.43 0.63 -24.47 16 9 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.67 -13.53 6.06 -101.07 -0.61 -14.14 16 14 C 0.12 2.09 2.97 -67.83 -0.20 1.89 16 15 H 0.05 0.85 7.24 -51.93 -0.38 0.48 16 16 C -0.12 -1.60 6.74 -25.32 -0.17 -1.77 16 17 C -0.07 -0.91 6.77 -26.85 -0.18 -1.09 16 18 C -0.09 -1.32 6.14 -104.19 -0.64 -1.96 16 19 C -0.11 -1.44 10.04 -39.54 -0.40 -1.83 16 20 C -0.12 -1.67 9.83 -39.59 -0.39 -2.06 16 21 C -0.04 -0.59 6.32 -39.54 -0.25 -0.84 16 22 Cl -0.08 -1.24 28.96 -51.86 -1.50 -2.74 16 23 C -0.08 -1.47 9.40 -39.50 -0.37 -1.84 16 24 C -0.05 -0.84 5.62 -104.21 -0.59 -1.43 16 25 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.03 0.56 6.32 -51.93 -0.33 0.23 16 27 H 0.06 1.51 7.17 -51.93 -0.37 1.13 16 28 H 0.09 2.42 6.21 -51.93 -0.32 2.09 16 29 H 0.01 0.21 7.48 -51.93 -0.39 -0.18 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.33 6.25 5.85 -39.29 -0.23 6.02 16 32 H 0.08 0.96 7.58 -51.93 -0.39 0.57 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 36 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 37 H 0.13 1.50 8.06 -52.49 -0.42 1.07 16 38 H 0.13 2.61 7.24 -52.49 -0.38 2.23 16 LS Contribution 317.22 15.07 4.78 4.78 Total: -1.00 -27.88 317.22 -10.42 -38.30 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -5.21 Total: 5.25 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -3.48 Total: -23.45 kcal Atomic # 7 Polarization: -38.63 SS G_CDS: 0.02 Total: -38.61 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 17 Polarization: -1.24 SS G_CDS: -1.50 Total: -2.74 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -27.88 -10.42 -38.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574581584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.759 kcal (2) G-P(sol) polarization free energy of solvation -27.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds