Wall clock time and date at job start Tue Mar 31 2020 00:55:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47091 * 2 1 4 4 H 1.08992 * 109.47542 * 184.75090 * 3 2 1 5 5 C 1.50700 * 109.47004 * 304.75364 * 3 2 1 6 6 H 1.07998 * 120.00060 * 119.99979 * 5 3 2 7 7 C 1.37875 * 119.99872 * 299.99967 * 5 3 2 8 8 N 1.31511 * 120.00066 * 359.97438 * 7 5 3 9 9 Si 1.86804 * 119.99980 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47299 * 59.99648 * 9 7 5 11 11 H 1.48494 * 109.47177 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46879 * 300.00007 * 9 7 5 13 13 N 1.46904 * 109.47007 * 64.75003 * 3 2 1 14 14 C 1.46896 * 110.99703 * 85.97834 * 13 3 2 15 15 H 1.09005 * 110.27388 * 324.41298 * 14 13 3 16 16 C 1.54346 * 110.30405 * 202.23340 * 14 13 3 17 17 C 1.54345 * 102.39577 * 267.42816 * 16 14 13 18 18 C 1.51378 * 105.16518 * 333.64126 * 17 16 14 19 19 C 1.38515 * 130.36743 * 197.17331 * 18 17 16 20 20 C 1.38081 * 120.22921 * 180.02562 * 19 18 17 21 21 C 1.38369 * 119.92211 * 0.02562 * 20 19 18 22 22 Cl 1.73600 * 120.04709 * 180.02562 * 21 20 19 23 23 C 1.38227 * 119.90770 * 0.02562 * 21 20 19 24 24 C 1.38228 * 109.76005 * 17.20280 * 18 17 16 25 25 H 1.09000 * 109.47017 * 182.78732 * 1 2 3 26 26 H 1.08996 * 109.47380 * 302.78587 * 1 2 3 27 27 H 1.08997 * 109.47116 * 62.78841 * 1 2 3 28 28 H 1.08999 * 109.47547 * 240.00201 * 2 1 3 29 29 H 1.08999 * 109.46974 * 119.99734 * 2 1 3 30 30 H 0.96999 * 119.99961 * 179.97438 * 8 7 5 31 31 H 1.00901 * 111.00268 * 322.02371 * 13 3 2 32 32 H 1.08997 * 110.82101 * 25.65364 * 16 14 13 33 33 H 1.09000 * 110.82374 * 149.19877 * 16 14 13 34 34 H 1.09002 * 110.30568 * 214.72023 * 17 16 14 35 35 H 1.08992 * 110.38732 * 92.60394 * 17 16 14 36 36 H 1.07995 * 119.88485 * 0.04012 * 19 18 17 37 37 H 1.08001 * 120.04000 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.89785 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1266 1.4438 -0.0851 5 6 1.4438 2.1861 -1.1674 6 1 0.8335 3.0604 -0.9959 7 6 1.6775 1.7501 -2.4543 8 7 2.4212 0.6857 -2.6632 9 14 0.9391 2.6722 -3.9014 10 1 1.4346 4.0721 -3.9013 11 1 1.3375 2.0068 -5.1677 12 1 -0.5414 2.6711 -3.7856 13 7 1.6462 2.1011 1.2527 14 6 2.6285 1.8437 2.3141 15 1 3.0316 0.8354 2.2192 16 6 1.9803 2.0352 3.7017 17 6 2.2968 3.5132 4.0141 18 6 3.5551 3.8227 3.2315 19 6 4.4610 4.8621 3.3638 20 6 5.5536 4.9432 2.5234 21 6 5.7446 3.9836 1.5451 22 17 7.1175 4.0820 0.4871 23 6 4.8407 2.9464 1.4112 24 6 3.7456 2.8636 2.2545 25 1 -0.3633 -1.0265 0.0500 26 1 -0.3634 0.5564 0.8639 27 1 -0.3633 0.4699 -0.9139 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 2.5853 0.3788 -3.5686 31 1 0.7221 1.8131 1.5377 32 1 0.9038 1.8715 3.6524 33 1 2.4401 1.3764 4.4384 34 1 2.4735 3.6447 5.0817 35 1 1.4793 4.1544 3.6848 36 1 4.3125 5.6115 4.1271 37 1 6.2579 5.7552 2.6291 38 1 4.9902 2.1972 0.6478 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574581584.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:43 Heat of formation + Delta-G solvation = -4.155258 kcal Electronic energy + Delta-G solvation = -19850.093508 eV Core-core repulsion = 16909.859573 eV Total energy + Delta-G solvation = -2940.233936 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -41.19994 -38.44280 -37.49312 -36.05251 -33.91853 -32.48129 -31.24914 -29.71592 -28.38668 -26.54469 -25.11744 -23.76013 -22.02426 -21.62329 -20.90745 -18.13434 -17.41003 -17.04695 -16.56282 -16.51324 -16.01696 -15.66656 -15.14649 -14.53541 -14.36268 -14.33994 -14.21264 -14.08547 -13.66624 -12.96867 -12.84493 -12.76514 -12.58930 -12.45639 -12.37551 -12.19356 -12.14552 -11.91054 -11.71720 -11.67222 -11.50194 -11.31339 -10.92257 -10.41687 -9.81908 -9.35583 -8.91996 -8.05042 -6.12561 0.24867 0.38958 1.17498 1.40537 1.42183 1.48814 2.44248 2.68594 3.24002 3.47754 3.65663 3.85207 4.01471 4.13862 4.23057 4.37522 4.50369 4.54585 4.60535 4.68729 4.71364 4.76585 4.89034 4.99041 5.06906 5.12085 5.18174 5.27565 5.31905 5.37160 5.44191 5.45194 5.68952 5.73129 5.75862 5.86759 5.94365 6.34133 6.69791 6.89822 7.01556 7.54944 8.99938 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.013986 B = 0.006725 C = 0.005138 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.531378 B = 4162.366475 C = 5447.925822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.140 4.140 3 C 0.226 3.774 4 H -0.004 1.004 5 C -0.495 4.495 6 H 0.050 0.950 7 C 0.014 3.986 8 N -0.921 5.921 9 Si 0.944 3.056 10 H -0.280 1.280 11 H -0.288 1.288 12 H -0.268 1.268 13 N -0.673 5.673 14 C 0.115 3.885 15 H 0.026 0.974 16 C -0.112 4.112 17 C -0.066 4.066 18 C -0.087 4.087 19 C -0.097 4.097 20 C -0.112 4.112 21 C -0.050 4.050 22 Cl -0.081 7.081 23 C -0.110 4.110 24 C -0.078 4.078 25 H 0.043 0.957 26 H 0.054 0.946 27 H 0.039 0.961 28 H 0.059 0.941 29 H 0.024 0.976 30 H 0.257 0.743 31 H 0.338 0.662 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.087 0.913 36 H 0.165 0.835 37 H 0.157 0.843 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.101 5.588 15.235 16.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.180 4.180 3 C 0.117 3.883 4 H 0.014 0.986 5 C -0.534 4.534 6 H 0.068 0.932 7 C -0.184 4.184 8 N -0.561 5.561 9 Si 0.771 3.229 10 H -0.206 1.206 11 H -0.213 1.213 12 H -0.194 1.194 13 N -0.306 5.306 14 C 0.005 3.995 15 H 0.044 0.956 16 C -0.150 4.150 17 C -0.103 4.103 18 C -0.088 4.088 19 C -0.115 4.115 20 C -0.130 4.130 21 C -0.077 4.077 22 Cl -0.052 7.052 23 C -0.129 4.129 24 C -0.079 4.079 25 H 0.062 0.938 26 H 0.072 0.928 27 H 0.058 0.942 28 H 0.077 0.923 29 H 0.043 0.957 30 H 0.066 0.934 31 H 0.159 0.841 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.183 0.817 37 H 0.174 0.826 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 2.539 6.088 14.817 16.219 hybrid contribution 0.082 -0.936 -1.711 1.952 sum 2.621 5.152 13.106 14.324 Atomic orbital electron populations 1.21436 0.95643 0.99401 1.00994 1.21970 0.96717 1.00100 0.99229 1.18908 0.93475 0.89144 0.86727 0.98630 1.21236 1.30163 1.11120 0.90872 0.93203 1.25544 0.96025 0.95873 1.00952 1.70000 1.39921 1.25088 1.21113 0.85817 0.79232 0.78689 0.79138 1.20561 1.21337 1.19353 1.60660 1.04101 1.62909 1.02892 1.21034 0.91300 0.93871 0.93284 0.95573 1.22495 1.01634 0.97243 0.93622 1.21010 0.93192 0.95982 1.00101 1.21069 0.97026 0.94071 0.96600 1.20900 0.92682 0.98032 0.99850 1.21182 0.99532 0.98181 0.94153 1.20847 0.91543 0.98798 0.96500 1.98336 1.42855 1.98081 1.65973 1.20536 0.94892 0.98276 0.99213 1.20619 0.93782 0.98480 0.95068 0.93772 0.92758 0.94198 0.92288 0.95725 0.93365 0.84077 0.89050 0.89078 0.87733 0.89507 0.81724 0.82551 0.88580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 9.39 71.98 0.68 -4.09 16 2 C -0.14 -6.54 5.50 30.59 0.17 -6.37 16 3 C 0.23 11.20 2.17 44.17 0.10 11.30 16 4 H 0.00 -0.24 6.48 -2.39 -0.02 -0.26 16 5 C -0.50 -27.18 7.41 25.60 0.19 -26.99 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.78 5.28 84.65 0.45 1.23 16 8 N -0.92 -53.62 11.37 21.45 0.24 -53.37 16 9 Si 0.94 44.81 29.54 68.60 2.03 46.83 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 11 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 12 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 13 N -0.67 -27.22 6.06 -473.69 -2.87 -30.10 16 14 C 0.12 3.97 2.97 44.84 0.13 4.10 16 15 H 0.03 0.99 7.24 -2.38 -0.02 0.98 16 16 C -0.11 -2.64 6.74 31.51 0.21 -2.43 16 17 C -0.07 -1.41 6.77 30.52 0.21 -1.20 16 18 C -0.09 -2.41 6.14 -19.58 -0.12 -2.53 16 19 C -0.10 -2.29 10.04 22.30 0.22 -2.06 16 20 C -0.11 -2.93 9.83 22.26 0.22 -2.71 16 21 C -0.05 -1.67 6.32 22.30 0.14 -1.53 16 22 Cl -0.08 -2.57 28.96 -2.72 -0.08 -2.65 16 23 C -0.11 -4.25 9.40 22.32 0.21 -4.04 16 24 C -0.08 -2.77 5.62 -19.60 -0.11 -2.88 16 25 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 26 H 0.05 1.91 6.32 -2.39 -0.02 1.90 16 27 H 0.04 1.81 7.17 -2.39 -0.02 1.79 16 28 H 0.06 3.17 6.21 -2.39 -0.01 3.16 16 29 H 0.02 1.04 7.48 -2.39 -0.02 1.02 16 30 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 31 H 0.34 12.41 5.85 -89.69 -0.53 11.89 16 32 H 0.09 1.93 7.58 -2.39 -0.02 1.91 16 33 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 35 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 36 H 0.17 2.54 8.06 -2.91 -0.02 2.52 16 37 H 0.16 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.10 4.27 7.24 -2.91 -0.02 4.25 16 Total: -1.00 -63.47 317.22 2.55 -60.92 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: 0.54 Total: 18.59 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 2.69 Total: -40.22 kcal Atomic # 7 Polarization: -80.84 SS G_CDS: -2.63 Total: -83.47 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.83 kcal Atomic # 17 Polarization: -2.57 SS G_CDS: -0.08 Total: -2.65 kcal Total: -63.47 2.55 -60.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574581584.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.761 kcal (2) G-P(sol) polarization free energy of solvation -63.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds