Wall clock time and date at job start Tue Mar 31 2020 00:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46526 * 2 1 4 4 H 1.09005 * 109.47288 * 58.20393 * 3 2 1 5 5 C 1.50706 * 109.46826 * 178.19844 * 3 2 1 6 6 H 1.08005 * 119.99443 * 114.65600 * 5 3 2 7 7 C 1.37878 * 120.00258 * 294.65404 * 5 3 2 8 8 N 1.31509 * 119.99755 * 350.41970 * 7 5 3 9 9 Si 1.86798 * 119.99813 * 170.41842 * 7 5 3 10 10 H 1.48500 * 109.47022 * 90.00238 * 9 7 5 11 11 H 1.48496 * 109.47262 * 329.99939 * 9 7 5 12 12 H 1.48502 * 109.46683 * 210.00290 * 9 7 5 13 13 N 1.46902 * 109.47342 * 298.19924 * 3 2 1 14 14 C 1.46902 * 110.99764 * 159.66382 * 13 3 2 15 15 H 1.09003 * 110.27094 * 32.14420 * 14 13 3 16 16 C 1.54343 * 110.30193 * 154.31732 * 14 13 3 17 17 C 1.54347 * 102.39587 * 145.27649 * 16 14 13 18 18 C 1.51373 * 105.16499 * 333.64373 * 17 16 14 19 19 C 1.38511 * 130.37042 * 197.20070 * 18 17 16 20 20 C 1.38075 * 120.23515 * 180.02562 * 19 18 17 21 21 C 1.38377 * 119.92100 * 359.97438 * 20 19 18 22 22 Cl 1.73590 * 120.04985 * 179.97438 * 21 20 19 23 23 C 1.38226 * 119.90415 * 0.02562 * 21 20 19 24 24 C 1.38230 * 109.75601 * 17.19998 * 18 17 16 25 25 H 1.08994 * 109.47424 * 63.51525 * 1 2 3 26 26 H 1.09002 * 109.46755 * 183.51900 * 1 2 3 27 27 H 1.08999 * 109.47049 * 303.51266 * 1 2 3 28 28 H 1.08998 * 109.46670 * 240.00586 * 2 1 3 29 29 H 1.08999 * 109.47438 * 119.99951 * 2 1 3 30 30 H 0.97003 * 120.00145 * 357.14224 * 8 7 5 31 31 H 1.00895 * 111.00232 * 283.61442 * 13 3 2 32 32 H 1.09003 * 110.82524 * 263.49801 * 16 14 13 33 33 H 1.09000 * 110.82360 * 27.04226 * 16 14 13 34 34 H 1.08999 * 110.30257 * 214.72340 * 17 16 14 35 35 H 1.08994 * 110.30611 * 92.56737 * 17 16 14 36 36 H 1.08003 * 119.88286 * 359.97438 * 19 18 17 37 37 H 1.08003 * 120.04147 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.89597 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6504 1.9656 0.8735 5 6 3.5463 1.4428 0.0447 6 1 4.1112 1.8242 -0.7931 7 6 4.2032 0.9563 1.1550 8 7 3.5268 0.6683 2.2454 9 14 6.0538 0.7062 1.1102 10 1 6.7321 1.9482 1.5605 11 1 6.4767 0.3862 -0.2768 12 1 6.4237 -0.4145 2.0115 13 7 1.5860 2.1223 -1.2206 14 6 1.6224 3.5815 -1.0549 15 1 2.4378 3.8659 -0.3898 16 6 1.7812 4.2724 -2.4260 17 6 0.9467 5.5585 -2.2476 18 6 -0.0868 5.2173 -1.1955 19 6 -1.2731 5.8509 -0.8645 20 6 -2.0687 5.3523 0.1479 21 6 -1.6806 4.2153 0.8343 22 17 -2.6779 3.5860 2.1081 23 6 -0.4969 3.5819 0.5051 24 6 0.3016 4.0814 -0.5102 25 1 -0.3634 0.4583 -0.9197 26 1 -0.3633 -1.0258 0.0631 27 1 -0.3633 0.5674 0.8568 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.5723 0.8370 2.2829 31 1 2.1324 1.8354 -2.0188 32 1 2.8265 4.5127 -2.6200 33 1 1.3710 3.6516 -3.2225 34 1 0.4585 5.8256 -3.1848 35 1 1.5805 6.3760 -1.9040 36 1 -1.5765 6.7387 -1.3996 37 1 -2.9934 5.8487 0.4031 38 1 -0.1943 2.6943 1.0406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574581585.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:48 Heat of formation + Delta-G solvation = -0.431173 kcal Electronic energy + Delta-G solvation = -19936.209984 eV Core-core repulsion = 16996.137537 eV Total energy + Delta-G solvation = -2940.072447 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.02097 -36.96489 -36.15047 -34.82111 -32.21403 -31.18507 -30.32343 -28.55109 -26.51091 -24.64444 -22.88722 -22.59413 -20.97695 -20.15552 -19.62220 -17.06134 -16.41988 -15.76106 -15.29328 -14.93480 -14.02812 -13.85071 -13.64955 -13.38082 -13.20303 -13.10990 -12.66240 -12.64542 -11.99798 -11.77039 -11.57776 -11.33030 -11.19484 -11.11873 -10.97505 -10.74316 -10.56065 -10.53232 -10.36111 -10.16753 -9.69895 -9.67390 -9.00778 -8.61216 -8.35357 -8.22916 -7.36032 -6.37856 -4.15030 1.35914 1.54546 2.32944 3.38007 3.41840 3.56928 3.82688 4.47874 4.59390 4.80183 5.04532 5.12229 5.19484 5.29303 5.41703 5.43378 5.62778 5.79816 5.88245 5.95367 6.04823 6.08999 6.17381 6.25023 6.33988 6.42758 6.44220 6.48617 6.55072 6.81327 6.89085 6.92789 7.02465 7.14126 7.33396 7.50407 7.89392 8.02645 8.38239 8.54583 8.77375 9.57743 10.94883 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.006074 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.189534 B = 4608.579654 C = 5501.677473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.108 4.108 3 C 0.201 3.799 4 H 0.028 0.972 5 C -0.631 4.631 6 H 0.048 0.952 7 C 0.029 3.971 8 N -0.903 5.903 9 Si 1.062 2.938 10 H -0.290 1.290 11 H -0.289 1.289 12 H -0.283 1.283 13 N -0.673 5.673 14 C 0.125 3.875 15 H 0.072 0.928 16 C -0.121 4.121 17 C -0.076 4.076 18 C -0.101 4.101 19 C -0.103 4.103 20 C -0.121 4.121 21 C -0.037 4.037 22 Cl -0.080 7.080 23 C -0.081 4.081 24 C -0.046 4.046 25 H 0.054 0.946 26 H 0.028 0.972 27 H 0.038 0.962 28 H 0.042 0.958 29 H 0.061 0.939 30 H 0.272 0.728 31 H 0.333 0.667 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.128 0.872 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.546 9.011 -6.704 14.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.147 4.147 3 C 0.093 3.907 4 H 0.046 0.954 5 C -0.670 4.670 6 H 0.066 0.934 7 C -0.177 4.177 8 N -0.538 5.538 9 Si 0.890 3.110 10 H -0.217 1.217 11 H -0.215 1.215 12 H -0.209 1.209 13 N -0.303 5.303 14 C 0.015 3.985 15 H 0.090 0.910 16 C -0.159 4.159 17 C -0.114 4.114 18 C -0.102 4.102 19 C -0.121 4.121 20 C -0.140 4.140 21 C -0.064 4.064 22 Cl -0.051 7.051 23 C -0.100 4.100 24 C -0.047 4.047 25 H 0.073 0.927 26 H 0.047 0.953 27 H 0.057 0.943 28 H 0.061 0.939 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.151 0.849 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.142 0.858 37 H 0.146 0.854 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -8.012 8.335 -5.527 12.814 hybrid contribution -0.425 0.592 -0.667 0.988 sum -8.437 8.927 -6.194 13.756 Atomic orbital electron populations 1.21725 0.98107 0.98753 1.01020 1.21549 0.92936 0.99365 1.00864 1.19338 0.93285 0.90389 0.87735 0.95435 1.22606 0.92193 1.47105 1.05086 0.93398 1.25677 1.06391 0.93492 0.92187 1.70765 1.10765 1.44664 1.27652 0.83661 0.74932 0.76912 0.75463 1.21659 1.21536 1.20883 1.60918 1.59062 1.02571 1.07721 1.20912 0.92330 0.90333 0.94931 0.91040 1.22516 1.00008 0.95771 0.97636 1.20982 0.95189 0.98435 0.96760 1.20682 0.95235 0.96135 0.98127 1.20421 0.93922 1.00051 0.97690 1.20787 1.00598 0.95758 0.96836 1.20757 0.94256 0.97224 0.94135 1.98348 1.69176 1.86926 1.50629 1.20699 0.92095 0.99925 0.97277 1.20627 0.96219 0.94160 0.93685 0.92677 0.95262 0.94337 0.93887 0.92042 0.91626 0.84940 0.90696 0.90349 0.90888 0.90315 0.85847 0.85406 0.84704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.73 9.72 37.16 0.36 -2.37 16 2 C -0.11 -2.46 5.35 -26.73 -0.14 -2.61 16 3 C 0.20 4.69 1.32 -68.86 -0.09 4.60 16 4 H 0.03 0.71 5.53 -51.93 -0.29 0.43 16 5 C -0.63 -16.53 8.01 -34.44 -0.28 -16.81 16 6 H 0.05 1.26 7.79 -52.48 -0.41 0.85 16 7 C 0.03 0.78 5.19 -17.82 -0.09 0.69 16 8 N -0.90 -26.18 12.90 55.43 0.72 -25.47 16 9 Si 1.06 24.48 29.91 -169.99 -5.09 19.40 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 N -0.67 -13.31 5.40 -101.08 -0.55 -13.86 16 14 C 0.13 2.26 2.97 -67.83 -0.20 2.06 16 15 H 0.07 1.50 7.49 -51.93 -0.39 1.11 16 16 C -0.12 -1.70 6.47 -25.32 -0.16 -1.86 16 17 C -0.08 -0.94 6.77 -26.85 -0.18 -1.12 16 18 C -0.10 -1.48 6.14 -104.19 -0.64 -2.12 16 19 C -0.10 -1.33 10.04 -39.54 -0.40 -1.73 16 20 C -0.12 -1.64 9.83 -39.59 -0.39 -2.03 16 21 C -0.04 -0.59 6.32 -39.53 -0.25 -0.84 16 22 Cl -0.08 -1.18 28.96 -51.86 -1.50 -2.68 16 23 C -0.08 -1.46 9.45 -39.50 -0.37 -1.83 16 24 C -0.05 -0.79 5.77 -104.21 -0.60 -1.40 16 25 H 0.05 1.06 7.76 -51.93 -0.40 0.66 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.04 0.76 7.17 -51.93 -0.37 0.39 16 28 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.06 1.55 6.50 -51.93 -0.34 1.21 16 30 H 0.27 7.89 6.27 -40.82 -0.26 7.63 16 31 H 0.33 6.47 8.14 -39.29 -0.32 6.15 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 33 H 0.08 1.06 8.04 -51.93 -0.42 0.64 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 36 H 0.12 1.23 8.06 -52.48 -0.42 0.81 16 37 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 38 H 0.14 2.69 5.61 -52.49 -0.29 2.39 16 LS Contribution 318.96 15.07 4.81 4.81 Total: -1.00 -27.89 318.96 -10.29 -38.18 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -5.24 Total: 6.98 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -3.44 Total: -27.36 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.17 Total: -39.32 kcal Atomic # 14 Polarization: 24.48 SS G_CDS: -5.09 Total: 19.40 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -1.50 Total: -2.68 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -27.89 -10.29 -38.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574581585.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.750 kcal (2) G-P(sol) polarization free energy of solvation -27.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds