Wall clock time and date at job start Tue Mar 31 2020 00:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46526 * 2 1 4 4 H 1.09005 * 109.47288 * 58.20393 * 3 2 1 5 5 C 1.50706 * 109.46826 * 178.19844 * 3 2 1 6 6 H 1.08005 * 119.99443 * 114.65600 * 5 3 2 7 7 C 1.37878 * 120.00258 * 294.65404 * 5 3 2 8 8 N 1.31509 * 119.99755 * 350.41970 * 7 5 3 9 9 Si 1.86798 * 119.99813 * 170.41842 * 7 5 3 10 10 H 1.48500 * 109.47022 * 90.00238 * 9 7 5 11 11 H 1.48496 * 109.47262 * 329.99939 * 9 7 5 12 12 H 1.48502 * 109.46683 * 210.00290 * 9 7 5 13 13 N 1.46902 * 109.47342 * 298.19924 * 3 2 1 14 14 C 1.46902 * 110.99764 * 159.66382 * 13 3 2 15 15 H 1.09003 * 110.27094 * 32.14420 * 14 13 3 16 16 C 1.54343 * 110.30193 * 154.31732 * 14 13 3 17 17 C 1.54347 * 102.39587 * 145.27649 * 16 14 13 18 18 C 1.51373 * 105.16499 * 333.64373 * 17 16 14 19 19 C 1.38511 * 130.37042 * 197.20070 * 18 17 16 20 20 C 1.38075 * 120.23515 * 180.02562 * 19 18 17 21 21 C 1.38377 * 119.92100 * 359.97438 * 20 19 18 22 22 Cl 1.73590 * 120.04985 * 179.97438 * 21 20 19 23 23 C 1.38226 * 119.90415 * 0.02562 * 21 20 19 24 24 C 1.38230 * 109.75601 * 17.19998 * 18 17 16 25 25 H 1.08994 * 109.47424 * 63.51525 * 1 2 3 26 26 H 1.09002 * 109.46755 * 183.51900 * 1 2 3 27 27 H 1.08999 * 109.47049 * 303.51266 * 1 2 3 28 28 H 1.08998 * 109.46670 * 240.00586 * 2 1 3 29 29 H 1.08999 * 109.47438 * 119.99951 * 2 1 3 30 30 H 0.97003 * 120.00145 * 357.14224 * 8 7 5 31 31 H 1.00895 * 111.00232 * 283.61442 * 13 3 2 32 32 H 1.09003 * 110.82524 * 263.49801 * 16 14 13 33 33 H 1.09000 * 110.82360 * 27.04226 * 16 14 13 34 34 H 1.08999 * 110.30257 * 214.72340 * 17 16 14 35 35 H 1.08994 * 110.30611 * 92.56737 * 17 16 14 36 36 H 1.08003 * 119.88286 * 359.97438 * 19 18 17 37 37 H 1.08003 * 120.04147 * 180.02562 * 20 19 18 38 38 H 1.07993 * 119.89597 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6504 1.9656 0.8735 5 6 3.5463 1.4428 0.0447 6 1 4.1112 1.8242 -0.7931 7 6 4.2032 0.9563 1.1550 8 7 3.5268 0.6683 2.2454 9 14 6.0538 0.7062 1.1102 10 1 6.7321 1.9482 1.5605 11 1 6.4767 0.3862 -0.2768 12 1 6.4237 -0.4145 2.0115 13 7 1.5860 2.1223 -1.2206 14 6 1.6224 3.5815 -1.0549 15 1 2.4378 3.8659 -0.3898 16 6 1.7812 4.2724 -2.4260 17 6 0.9467 5.5585 -2.2476 18 6 -0.0868 5.2173 -1.1955 19 6 -1.2731 5.8509 -0.8645 20 6 -2.0687 5.3523 0.1479 21 6 -1.6806 4.2153 0.8343 22 17 -2.6779 3.5860 2.1081 23 6 -0.4969 3.5819 0.5051 24 6 0.3016 4.0814 -0.5102 25 1 -0.3634 0.4583 -0.9197 26 1 -0.3633 -1.0258 0.0631 27 1 -0.3633 0.5674 0.8568 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.5723 0.8370 2.2829 31 1 2.1324 1.8354 -2.0188 32 1 2.8265 4.5127 -2.6200 33 1 1.3710 3.6516 -3.2225 34 1 0.4585 5.8256 -3.1848 35 1 1.5805 6.3760 -1.9040 36 1 -1.5765 6.7387 -1.3996 37 1 -2.9934 5.8487 0.4031 38 1 -0.1943 2.6943 1.0406 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574581585.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:46 Heat of formation + Delta-G solvation = -14.964280 kcal Electronic energy + Delta-G solvation = -19936.840187 eV Core-core repulsion = 16996.137537 eV Total energy + Delta-G solvation = -2940.702650 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.91 seconds Orbital eigenvalues (eV) -41.23273 -38.40388 -37.57681 -36.18044 -34.02872 -32.78059 -31.66896 -29.72528 -28.16361 -26.28626 -24.72036 -23.76838 -22.29145 -21.51310 -21.27658 -19.05507 -17.63309 -17.14254 -16.56297 -16.14666 -15.73677 -15.53584 -15.17079 -15.05496 -14.39131 -14.29199 -14.25235 -14.02074 -13.77602 -13.22627 -12.92798 -12.70308 -12.59064 -12.49375 -12.41554 -12.29242 -12.15081 -11.98432 -11.84145 -11.67358 -11.43349 -11.36521 -10.92066 -10.45136 -9.82341 -9.41752 -9.13391 -8.51806 -6.33863 0.19094 0.36385 1.14499 1.49300 1.56864 1.74030 2.54507 2.64736 3.17002 3.48579 3.60178 3.64108 3.98135 4.09850 4.25908 4.30345 4.37657 4.44661 4.49826 4.64972 4.69166 4.73394 4.86215 4.92738 4.96897 5.02537 5.12156 5.17516 5.23356 5.28597 5.31149 5.38242 5.46546 5.62983 5.69621 5.88743 5.95623 6.01524 6.49845 6.56410 6.80980 7.47568 8.75027 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016671 B = 0.006074 C = 0.005088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.189534 B = 4608.579654 C = 5501.677473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.212 3.788 4 H -0.004 1.004 5 C -0.634 4.634 6 H 0.046 0.954 7 C -0.022 4.022 8 N -0.930 5.930 9 Si 1.107 2.893 10 H -0.279 1.279 11 H -0.271 1.271 12 H -0.286 1.286 13 N -0.664 5.664 14 C 0.121 3.879 15 H 0.030 0.970 16 C -0.114 4.114 17 C -0.068 4.068 18 C -0.098 4.098 19 C -0.092 4.092 20 C -0.112 4.112 21 C -0.050 4.050 22 Cl -0.079 7.079 23 C -0.106 4.106 24 C -0.078 4.078 25 H 0.061 0.939 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.043 0.957 29 H 0.030 0.970 30 H 0.259 0.741 31 H 0.335 0.665 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.167 0.833 37 H 0.159 0.841 38 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.307 11.080 -8.998 17.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.102 3.898 4 H 0.014 0.986 5 C -0.673 4.673 6 H 0.064 0.936 7 C -0.222 4.222 8 N -0.567 5.567 9 Si 0.930 3.070 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.211 1.211 13 N -0.293 5.293 14 C 0.011 3.989 15 H 0.048 0.952 16 C -0.152 4.152 17 C -0.105 4.105 18 C -0.098 4.098 19 C -0.110 4.110 20 C -0.131 4.131 21 C -0.076 4.076 22 Cl -0.050 7.050 23 C -0.126 4.126 24 C -0.079 4.079 25 H 0.080 0.920 26 H 0.067 0.933 27 H 0.048 0.952 28 H 0.062 0.938 29 H 0.049 0.951 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.102 0.898 33 H 0.105 0.895 34 H 0.124 0.876 35 H 0.112 0.888 36 H 0.184 0.816 37 H 0.176 0.824 38 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.787 10.417 -7.842 15.723 hybrid contribution -0.251 0.000 0.048 0.255 sum -9.038 10.416 -7.794 15.841 Atomic orbital electron populations 1.21553 0.95680 0.99874 1.00920 1.21409 0.95041 0.98440 0.99229 1.19059 0.91718 0.90767 0.88227 0.98589 1.22966 0.93858 1.45891 1.04588 0.93599 1.27007 1.10116 0.93183 0.91942 1.70878 1.10124 1.46870 1.28808 0.83066 0.70504 0.77071 0.76352 1.20528 1.19550 1.21148 1.60858 1.58351 1.04018 1.06074 1.20981 0.91897 0.89143 0.96897 0.95237 1.22501 1.01252 0.96501 0.94915 1.21029 0.94490 0.97520 0.97502 1.21032 0.96136 0.94784 0.97891 1.20887 0.92533 1.00630 0.96912 1.21201 1.01537 0.94390 0.95966 1.20888 0.93793 0.98155 0.94761 1.98341 1.68844 1.87138 1.50695 1.20555 0.93884 0.99857 0.98261 1.20647 0.96242 0.96129 0.94850 0.92011 0.93301 0.95241 0.93844 0.95114 0.93120 0.84768 0.89812 0.89533 0.87595 0.88843 0.81550 0.82382 0.88230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.72 71.98 0.70 -4.27 16 2 C -0.10 -4.85 5.35 30.59 0.16 -4.69 16 3 C 0.21 10.40 1.32 44.17 0.06 10.46 16 4 H 0.00 -0.21 5.53 -2.38 -0.01 -0.22 16 5 C -0.63 -34.39 8.01 25.60 0.20 -34.19 16 6 H 0.05 2.45 7.79 -2.91 -0.02 2.43 16 7 C -0.02 -1.26 5.19 84.66 0.44 -0.83 16 8 N -0.93 -56.41 12.90 21.45 0.28 -56.13 16 9 Si 1.11 49.99 29.91 68.60 2.05 52.04 16 10 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 11 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.29 -12.96 7.11 99.48 0.71 -12.26 16 13 N -0.66 -27.01 5.40 -473.70 -2.56 -29.57 16 14 C 0.12 4.46 2.97 44.84 0.13 4.59 16 15 H 0.03 1.32 7.49 -2.39 -0.02 1.30 16 16 C -0.11 -2.98 6.47 31.51 0.20 -2.78 16 17 C -0.07 -1.43 6.77 30.52 0.21 -1.22 16 18 C -0.10 -2.60 6.14 -19.59 -0.12 -2.72 16 19 C -0.09 -2.01 10.04 22.30 0.22 -1.78 16 20 C -0.11 -2.72 9.83 22.26 0.22 -2.50 16 21 C -0.05 -1.54 6.32 22.30 0.14 -1.40 16 22 Cl -0.08 -2.34 28.96 -2.72 -0.08 -2.42 16 23 C -0.11 -3.97 9.45 22.32 0.21 -3.76 16 24 C -0.08 -2.71 5.77 -19.60 -0.11 -2.83 16 25 H 0.06 2.40 7.76 -2.39 -0.02 2.38 16 26 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.03 1.22 7.17 -2.39 -0.02 1.20 16 28 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 29 H 0.03 1.62 6.50 -2.39 -0.02 1.61 16 30 H 0.26 16.01 6.27 -92.71 -0.58 15.43 16 31 H 0.33 13.13 8.14 -89.70 -0.73 12.40 16 32 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.09 2.13 8.04 -2.39 -0.02 2.11 16 34 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.17 2.26 8.06 -2.91 -0.02 2.24 16 37 H 0.16 2.85 8.06 -2.91 -0.02 2.82 16 38 H 0.10 4.34 5.61 -2.91 -0.02 4.33 16 Total: -1.00 -64.03 318.96 2.89 -61.14 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.53 Total: 22.86 kcal Atomic # 6 Polarization: -50.59 SS G_CDS: 2.67 Total: -47.92 kcal Atomic # 7 Polarization: -83.42 SS G_CDS: -2.28 Total: -85.70 kcal Atomic # 14 Polarization: 49.99 SS G_CDS: 2.05 Total: 52.04 kcal Atomic # 17 Polarization: -2.34 SS G_CDS: -0.08 Total: -2.42 kcal Total: -64.03 2.89 -61.14 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574581585.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.176 kcal (2) G-P(sol) polarization free energy of solvation -64.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds