Wall clock time and date at job start Tue Mar 31 2020 00:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31787 * 122.74572 * 2 1 4 4 C 1.29027 * 117.12361 * 179.97438 * 3 2 1 5 5 S 1.70979 * 110.16770 * 359.72984 * 4 3 2 6 6 C 1.33637 * 122.75346 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03660 * 0.02562 * 6 2 1 8 8 C 1.53006 * 109.46866 * 89.99861 * 7 6 2 9 9 N 1.46902 * 109.46626 * 179.97438 * 8 7 6 10 10 C 1.46905 * 110.99800 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47234 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.46965 * 305.00257 * 11 10 9 13 13 C 1.47201 * 109.47129 * 65.00133 * 11 10 9 14 14 N 7.45958 * 60.58357 * 195.27079 * 2 1 3 15 15 C 1.53003 * 109.46996 * 185.00028 * 11 10 9 16 16 C 1.50695 * 109.47067 * 175.00166 * 15 11 10 17 17 H 1.08012 * 119.99922 * 359.97438 * 16 15 11 18 18 C 1.37875 * 120.00495 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99636 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00533 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46890 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47470 * 119.99156 * 20 18 16 23 23 H 1.48500 * 109.46825 * 239.99525 * 20 18 16 24 24 H 1.08998 * 109.47300 * 269.99969 * 1 2 3 25 25 H 1.09001 * 109.46936 * 30.00344 * 1 2 3 26 26 H 1.09003 * 109.46557 * 149.99500 * 1 2 3 27 27 H 1.08003 * 124.91714 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47247 * 330.00030 * 7 6 2 29 29 H 1.09001 * 109.47358 * 209.99456 * 7 6 2 30 30 H 1.08993 * 109.46955 * 300.00219 * 8 7 6 31 31 H 1.09000 * 109.47050 * 60.00048 * 8 7 6 32 32 H 1.00898 * 110.99915 * 56.05185 * 9 8 7 33 33 H 1.09002 * 109.47091 * 300.00139 * 10 9 8 34 34 H 1.09001 * 109.46854 * 60.00166 * 10 9 8 35 35 H 1.09000 * 109.46885 * 294.99930 * 15 11 10 36 36 H 1.09003 * 109.47053 * 54.99762 * 15 11 10 37 37 H 0.97000 * 120.00449 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1084 0.0000 4 6 3.5039 0.9820 0.0005 5 16 3.9333 -0.6729 0.0086 6 6 2.2300 -1.1239 0.0005 7 6 1.6848 -2.5288 0.0006 8 6 1.5008 -3.0045 -1.4420 9 7 0.9699 -4.3742 -1.4418 10 6 0.7805 -4.8655 -2.8133 11 6 0.2272 -6.2914 -2.7724 12 1 0.8858 -6.9196 -2.1727 13 6 -1.1177 -6.2788 -2.1741 14 7 -2.1568 -6.2684 -1.7114 15 6 0.1472 -6.8484 -4.1952 16 6 -0.2808 -8.2924 -4.1460 17 1 -0.4758 -8.7658 -3.1949 18 6 -0.4224 -9.0098 -5.3148 19 7 -0.1844 -8.4336 -6.4729 20 14 -0.9536 -10.7996 -5.2539 21 1 -1.1576 -11.2075 -3.8407 22 1 -2.2237 -10.9649 -6.0054 23 1 0.0986 -11.6493 -5.8670 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3632 -0.8900 -0.5139 27 1 4.2059 1.8028 0.0010 28 1 0.7235 -2.5455 0.5141 29 1 2.3829 -3.1895 0.5147 30 1 0.8028 -2.3439 -1.9561 31 1 2.4622 -2.9878 -1.9554 32 1 0.1106 -4.4289 -0.9159 33 1 0.0773 -4.2182 -3.3373 34 1 1.7370 -4.8615 -3.3360 35 1 -0.5789 -6.2736 -4.7700 36 1 1.1259 -6.7754 -4.6695 37 1 -0.2844 -8.9381 -7.2953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577386556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:18 Heat of formation + Delta-G solvation = 48.025280 kcal Electronic energy + Delta-G solvation = -18175.972530 eV Core-core repulsion = 15272.337769 eV Total energy + Delta-G solvation = -2903.634760 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.16932 -37.65038 -35.79037 -34.03338 -33.10934 -31.60225 -30.06813 -27.30846 -25.86707 -24.75668 -22.87534 -22.30676 -21.63571 -19.09314 -18.35987 -16.75644 -16.65560 -16.04257 -15.79528 -15.02399 -14.81190 -14.45061 -14.16302 -13.77812 -13.30701 -13.01445 -12.96353 -12.82218 -12.61391 -12.41171 -12.33872 -12.05780 -11.73068 -11.63447 -11.27753 -11.10065 -11.00749 -10.76078 -10.54433 -10.29256 -9.90457 -9.61886 -9.47327 -9.23893 -8.94187 -8.48203 -8.42714 -6.11519 -4.14699 0.44251 1.10885 1.49603 2.51815 3.27296 3.35593 3.40087 3.52110 3.57651 3.94619 4.10592 4.40082 4.70251 4.76035 4.79911 4.89944 4.98632 5.10704 5.26647 5.34575 5.37410 5.46130 5.53211 5.60135 5.67413 5.79270 5.82297 6.05656 6.10978 6.31323 6.50873 6.98925 7.33719 7.41448 7.45687 7.50383 7.83648 8.20875 8.36293 8.90131 9.50994 10.99411 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034980 B = 0.002780 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.263203 B =10069.063699 C =10428.707537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.056 3.944 3 N -0.468 5.468 4 C 0.012 3.988 5 S 0.123 5.877 6 C -0.210 4.210 7 C -0.042 4.042 8 C 0.064 3.936 9 N -0.692 5.692 10 C 0.068 3.932 11 C 0.007 3.993 12 H 0.112 0.888 13 C 0.241 3.759 14 N -0.476 5.476 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.891 5.891 20 Si 0.892 3.108 21 H -0.272 1.272 22 H -0.284 1.284 23 H -0.282 1.282 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.075 0.925 27 H 0.198 0.802 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.033 0.967 31 H 0.077 0.923 32 H 0.339 0.661 33 H 0.036 0.964 34 H 0.092 0.908 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 17.259 12.148 23.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.075 4.075 3 N -0.182 5.182 4 C -0.286 4.286 5 S 0.377 5.623 6 C -0.331 4.331 7 C -0.082 4.082 8 C -0.066 4.066 9 N -0.323 5.323 10 C -0.062 4.062 11 C -0.015 4.015 12 H 0.129 0.871 13 C -0.076 4.076 14 N -0.153 5.153 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.076 0.924 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.208 1.208 24 H 0.093 0.907 25 H 0.094 0.906 26 H 0.094 0.906 27 H 0.214 0.786 28 H 0.103 0.897 29 H 0.107 0.893 30 H 0.051 0.949 31 H 0.095 0.905 32 H 0.156 0.844 33 H 0.054 0.946 34 H 0.110 0.890 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 9.162 16.998 12.737 23.133 hybrid contribution -1.442 -0.397 -0.612 1.616 sum 7.720 16.601 12.125 21.959 Atomic orbital electron populations 1.20378 0.87096 1.03500 1.02943 1.20258 0.98279 0.86206 1.02783 1.66178 1.05099 1.31687 1.15196 1.28264 0.95237 1.00171 1.04903 1.84106 1.07106 1.03373 1.67695 1.25699 0.95001 1.00672 1.11737 1.20044 1.01784 0.88326 0.98084 1.21929 1.00631 0.88954 0.95089 1.60559 1.35003 1.21374 1.15318 1.22086 1.01283 0.94349 0.88483 1.19336 0.84763 0.96363 1.01045 0.87052 1.29385 0.94981 0.91670 0.91547 1.81102 1.12215 1.10070 1.11958 1.19171 0.98898 0.96009 0.86597 1.21182 1.46539 0.95818 0.92877 0.92428 1.24959 0.95133 0.98476 0.95454 1.69946 1.48921 1.36686 0.97464 0.86531 0.78323 0.84945 0.78266 1.19668 1.20998 1.20808 0.90655 0.90601 0.90591 0.78558 0.89741 0.89337 0.94893 0.90491 0.84374 0.94596 0.88959 0.95744 0.94178 0.92833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.70 9.82 36.01 0.35 -0.35 16 2 C 0.06 0.59 6.74 -84.22 -0.57 0.02 16 3 N -0.47 -5.17 10.53 -11.89 -0.13 -5.30 16 4 C 0.01 0.10 12.23 51.58 0.63 0.73 16 5 S 0.12 1.01 23.22 -107.50 -2.50 -1.49 16 6 C -0.21 -2.02 5.84 -35.92 -0.21 -2.23 16 7 C -0.04 -0.38 5.41 -27.88 -0.15 -0.54 16 8 C 0.06 0.67 5.67 -3.82 -0.02 0.64 16 9 N -0.69 -8.50 6.50 -113.77 -0.74 -9.24 16 10 C 0.07 0.96 5.12 -3.82 -0.02 0.94 16 11 C 0.01 0.12 2.42 -93.41 -0.23 -0.10 16 12 H 0.11 1.91 8.14 -51.93 -0.42 1.48 16 13 C 0.24 4.74 12.98 -20.71 -0.27 4.47 16 14 N -0.48 -10.13 18.55 42.21 0.78 -9.35 16 15 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 16 C -0.53 -13.87 8.60 -34.44 -0.30 -14.17 16 17 H 0.06 1.52 7.59 -52.48 -0.40 1.12 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.38 13.29 55.43 0.74 -24.65 16 20 Si 0.89 21.20 29.54 -169.99 -5.02 16.17 16 21 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.08 0.62 7.19 -51.93 -0.37 0.25 16 27 H 0.20 1.00 8.06 -52.48 -0.42 0.57 16 28 H 0.08 0.72 7.43 -51.93 -0.39 0.34 16 29 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.35 7.98 -51.93 -0.41 -0.06 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.34 4.24 7.81 -39.29 -0.31 3.93 16 33 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 335.28 15.07 5.05 5.05 Total: -1.00 -30.57 335.28 -8.05 -38.62 By element: Atomic # 1 Polarization: 3.79 SS G_CDS: -5.24 Total: -1.45 kcal Atomic # 6 Polarization: -7.37 SS G_CDS: -1.00 Total: -8.37 kcal Atomic # 7 Polarization: -49.19 SS G_CDS: 0.65 Total: -48.53 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: 1.01 SS G_CDS: -2.50 Total: -1.49 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.57 -8.05 -38.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577386556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.646 kcal (2) G-P(sol) polarization free energy of solvation -30.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.621 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds