Wall clock time and date at job start Tue Mar 31 2020 00:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31787 * 122.74572 * 2 1 4 4 C 1.29027 * 117.12361 * 179.97438 * 3 2 1 5 5 S 1.70979 * 110.16770 * 359.72984 * 4 3 2 6 6 C 1.33637 * 122.75346 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03660 * 0.02562 * 6 2 1 8 8 C 1.53006 * 109.46866 * 89.99861 * 7 6 2 9 9 N 1.46902 * 109.46626 * 179.97438 * 8 7 6 10 10 C 1.46905 * 110.99800 * 180.02562 * 9 8 7 11 11 C 1.53000 * 109.47234 * 180.02562 * 10 9 8 12 12 H 1.09003 * 109.46965 * 305.00257 * 11 10 9 13 13 C 1.47201 * 109.47129 * 65.00133 * 11 10 9 14 14 N 7.45958 * 60.58357 * 195.27079 * 2 1 3 15 15 C 1.53003 * 109.46996 * 185.00028 * 11 10 9 16 16 C 1.50695 * 109.47067 * 175.00166 * 15 11 10 17 17 H 1.08012 * 119.99922 * 359.97438 * 16 15 11 18 18 C 1.37875 * 120.00495 * 180.02562 * 16 15 11 19 19 N 1.31516 * 119.99636 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00533 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46890 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47470 * 119.99156 * 20 18 16 23 23 H 1.48500 * 109.46825 * 239.99525 * 20 18 16 24 24 H 1.08998 * 109.47300 * 269.99969 * 1 2 3 25 25 H 1.09001 * 109.46936 * 30.00344 * 1 2 3 26 26 H 1.09003 * 109.46557 * 149.99500 * 1 2 3 27 27 H 1.08003 * 124.91714 * 180.02562 * 4 3 2 28 28 H 1.09000 * 109.47247 * 330.00030 * 7 6 2 29 29 H 1.09001 * 109.47358 * 209.99456 * 7 6 2 30 30 H 1.08993 * 109.46955 * 300.00219 * 8 7 6 31 31 H 1.09000 * 109.47050 * 60.00048 * 8 7 6 32 32 H 1.00898 * 110.99915 * 56.05185 * 9 8 7 33 33 H 1.09002 * 109.47091 * 300.00139 * 10 9 8 34 34 H 1.09001 * 109.46854 * 60.00166 * 10 9 8 35 35 H 1.09000 * 109.46885 * 294.99930 * 15 11 10 36 36 H 1.09003 * 109.47053 * 54.99762 * 15 11 10 37 37 H 0.97000 * 120.00449 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2198 1.1084 0.0000 4 6 3.5039 0.9820 0.0005 5 16 3.9333 -0.6729 0.0086 6 6 2.2300 -1.1239 0.0005 7 6 1.6848 -2.5288 0.0006 8 6 1.5008 -3.0045 -1.4420 9 7 0.9699 -4.3742 -1.4418 10 6 0.7805 -4.8655 -2.8133 11 6 0.2272 -6.2914 -2.7724 12 1 0.8858 -6.9196 -2.1727 13 6 -1.1177 -6.2788 -2.1741 14 7 -2.1568 -6.2684 -1.7114 15 6 0.1472 -6.8484 -4.1952 16 6 -0.2808 -8.2924 -4.1460 17 1 -0.4758 -8.7658 -3.1949 18 6 -0.4224 -9.0098 -5.3148 19 7 -0.1844 -8.4336 -6.4729 20 14 -0.9536 -10.7996 -5.2539 21 1 -1.1576 -11.2075 -3.8407 22 1 -2.2237 -10.9649 -6.0054 23 1 0.0986 -11.6493 -5.8670 24 1 -0.3634 0.0000 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3632 -0.8900 -0.5139 27 1 4.2059 1.8028 0.0010 28 1 0.7235 -2.5455 0.5141 29 1 2.3829 -3.1895 0.5147 30 1 0.8028 -2.3439 -1.9561 31 1 2.4622 -2.9878 -1.9554 32 1 0.1106 -4.4289 -0.9159 33 1 0.0773 -4.2182 -3.3373 34 1 1.7370 -4.8615 -3.3360 35 1 -0.5789 -6.2736 -4.7700 36 1 1.1259 -6.7754 -4.6695 37 1 -0.2844 -8.9381 -7.2953 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577386556.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:17 Heat of formation + Delta-G solvation = 28.926328 kcal Electronic energy + Delta-G solvation = -18176.800722 eV Core-core repulsion = 15272.337769 eV Total energy + Delta-G solvation = -2904.462953 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.86913 -38.96335 -37.02217 -35.61643 -34.48388 -32.96760 -31.01049 -28.62443 -27.02670 -25.56927 -24.21967 -23.58621 -22.90413 -19.79899 -19.04136 -18.52636 -18.23373 -17.07465 -16.70330 -16.50705 -15.78548 -15.61641 -15.25314 -14.78042 -14.49889 -14.34876 -14.22025 -13.95424 -13.65809 -13.48374 -13.44424 -13.23542 -13.07616 -12.99201 -12.65642 -12.48812 -12.43315 -12.29457 -12.00055 -11.73593 -11.40007 -11.14950 -10.58958 -10.55345 -10.17625 -9.62801 -9.43544 -8.19397 -6.27439 -0.22890 0.46658 0.83014 1.39528 1.42643 1.52917 1.80621 1.94309 1.96393 2.41768 3.09778 3.15928 3.25573 3.38000 3.96013 4.05090 4.15512 4.22025 4.30951 4.35953 4.45487 4.63715 4.71033 4.71788 4.79104 4.92182 4.95611 4.99265 5.06339 5.08910 5.37167 5.48179 5.62979 5.79908 5.95595 6.21119 6.32584 6.76075 6.78054 6.88164 7.41310 8.91725 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034980 B = 0.002780 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.263203 B =10069.063699 C =10428.707537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.041 3.959 3 N -0.502 5.502 4 C 0.014 3.986 5 S 0.150 5.850 6 C -0.225 4.225 7 C -0.034 4.034 8 C 0.068 3.932 9 N -0.689 5.689 10 C 0.078 3.922 11 C 0.019 3.981 12 H 0.125 0.875 13 C 0.251 3.749 14 N -0.504 5.504 15 C 0.037 3.963 16 C -0.538 4.538 17 H 0.055 0.945 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.949 3.051 21 H -0.269 1.269 22 H -0.286 1.286 23 H -0.273 1.273 24 H 0.082 0.918 25 H 0.071 0.929 26 H 0.079 0.921 27 H 0.227 0.773 28 H 0.089 0.911 29 H 0.092 0.908 30 H 0.031 0.969 31 H 0.079 0.921 32 H 0.338 0.662 33 H 0.033 0.967 34 H 0.105 0.895 35 H 0.000 1.000 36 H 0.037 0.963 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.383 17.368 13.037 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.091 4.091 3 N -0.216 5.216 4 C -0.283 4.283 5 S 0.404 5.596 6 C -0.346 4.346 7 C -0.074 4.074 8 C -0.062 4.062 9 N -0.320 5.320 10 C -0.052 4.052 11 C -0.002 4.002 12 H 0.143 0.857 13 C -0.065 4.065 14 N -0.181 5.181 15 C -0.002 4.002 16 C -0.576 4.576 17 H 0.073 0.927 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.775 3.225 21 H -0.193 1.193 22 H -0.212 1.212 23 H -0.198 1.198 24 H 0.101 0.899 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.243 0.757 28 H 0.107 0.893 29 H 0.110 0.890 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.156 0.844 33 H 0.051 0.949 34 H 0.123 0.877 35 H 0.018 0.982 36 H 0.055 0.945 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.211 17.109 13.641 24.146 hybrid contribution -1.713 -0.383 -0.877 1.962 sum 8.498 16.726 12.765 22.692 Atomic orbital electron populations 1.20401 0.86598 1.03457 1.03418 1.20516 0.98993 0.86510 1.03043 1.66222 1.06255 1.32295 1.16872 1.28827 0.95048 1.01372 1.03103 1.83992 1.05793 1.02848 1.66967 1.25772 0.96005 1.00567 1.12279 1.19947 1.02198 0.88164 0.97127 1.21926 1.00450 0.87687 0.96122 1.60526 1.34898 1.22679 1.13849 1.21921 1.01530 0.91915 0.89820 1.19227 0.84250 0.98809 0.97961 0.85730 1.29706 0.95080 0.90753 0.90961 1.81105 1.12964 1.11189 1.12866 1.18996 0.97661 0.94221 0.89279 1.21594 1.45778 0.97578 0.92625 0.92714 1.25719 0.95512 1.02253 0.95378 1.70038 1.50225 1.38137 0.97998 0.85639 0.77916 0.80752 0.78242 1.19324 1.21185 1.19843 0.89919 0.90962 0.90268 0.75689 0.89274 0.88993 0.95093 0.90251 0.84431 0.94898 0.87694 0.98164 0.94520 0.92733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.35 9.82 71.24 0.70 -0.65 16 2 C 0.04 0.82 6.74 41.52 0.28 1.10 16 3 N -0.50 -10.56 10.53 -191.55 -2.02 -12.58 16 4 C 0.01 0.21 12.23 130.65 1.60 1.80 16 5 S 0.15 2.16 23.22 -56.49 -1.31 0.85 16 6 C -0.22 -4.01 5.84 24.64 0.14 -3.87 16 7 C -0.03 -0.57 5.41 29.85 0.16 -0.41 16 8 C 0.07 1.29 5.67 86.31 0.49 1.78 16 9 N -0.69 -15.66 6.50 -513.86 -3.34 -19.00 16 10 C 0.08 2.10 5.12 86.30 0.44 2.55 16 11 C 0.02 0.67 2.42 -12.60 -0.03 0.64 16 12 H 0.13 4.03 8.14 -2.39 -0.02 4.01 16 13 C 0.25 9.67 12.98 89.42 1.16 10.83 16 14 N -0.50 -21.10 18.55 20.02 0.37 -20.73 16 15 C 0.04 1.69 4.42 29.85 0.13 1.82 16 16 C -0.54 -28.17 8.60 25.60 0.22 -27.95 16 17 H 0.05 2.84 7.59 -2.90 -0.02 2.82 16 18 C 0.01 0.56 5.46 84.65 0.46 1.02 16 19 N -0.92 -52.78 13.29 21.45 0.28 -52.49 16 20 Si 0.95 43.18 29.54 68.60 2.03 45.21 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 24 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 26 H 0.08 1.25 7.19 -2.39 -0.02 1.23 16 27 H 0.23 1.73 8.06 -2.91 -0.02 1.71 16 28 H 0.09 1.39 7.43 -2.39 -0.02 1.37 16 29 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.03 0.62 7.98 -2.39 -0.02 0.60 16 31 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.34 7.90 7.81 -89.70 -0.70 7.20 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 35 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 36 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -64.13 335.28 2.15 -61.98 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: 0.38 Total: 8.09 kcal Atomic # 6 Polarization: -17.10 SS G_CDS: 5.76 Total: -11.34 kcal Atomic # 7 Polarization: -100.10 SS G_CDS: -4.70 Total: -104.80 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.31 Total: 0.85 kcal Total: -64.13 2.15 -61.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577386556.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.911 kcal (2) G-P(sol) polarization free energy of solvation -64.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds