Wall clock time and date at job start Tue Mar 31 2020 00:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 N 1.46893 * 109.47226 * 179.97438 * 8 7 6 10 10 C 1.46898 * 111.00181 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47390 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47195 * 54.99267 * 11 10 9 13 13 C 1.47208 * 109.46640 * 294.99911 * 11 10 9 14 14 N 8.07954 * 93.52846 * 192.07675 * 2 1 3 15 15 C 1.52996 * 109.47257 * 174.99884 * 11 10 9 16 16 C 1.50698 * 109.47145 * 184.99547 * 15 11 10 17 17 H 1.08006 * 120.00053 * 0.02562 * 16 15 11 18 18 C 1.37875 * 120.00110 * 179.97438 * 16 15 11 19 19 N 1.31519 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00127 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46968 * 90.00464 * 20 18 16 22 22 H 1.48500 * 109.47012 * 210.00049 * 20 18 16 23 23 H 1.48494 * 109.47207 * 329.99978 * 20 18 16 24 24 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 25 25 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 26 26 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 27 27 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 29 29 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 30 30 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 31 31 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 32 32 H 1.00902 * 111.00524 * 56.04317 * 9 8 7 33 33 H 1.08996 * 109.46731 * 299.99953 * 10 9 8 34 34 H 1.08993 * 109.47014 * 59.99592 * 10 9 8 35 35 H 1.09000 * 109.47176 * 304.99995 * 15 11 10 36 36 H 1.09003 * 109.46900 * 64.99879 * 15 11 10 37 37 H 0.97003 * 119.99994 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 7 0.9746 -4.3780 -1.4322 10 6 0.7898 -4.8729 -2.8029 11 6 0.2362 -6.2986 -2.7601 12 1 -0.6767 -6.3162 -2.1648 13 6 1.2346 -7.1946 -2.1539 14 7 2.0043 -7.8857 -1.6872 15 6 -0.0735 -6.7684 -4.1829 16 6 -0.7319 -8.1230 -4.1325 17 1 -0.9119 -8.6009 -3.1808 18 6 -1.1055 -8.7518 -5.3012 19 7 -0.8868 -8.1697 -6.4601 20 14 -1.9222 -10.4307 -5.2388 21 1 -3.3950 -10.2616 -5.1510 22 1 -1.5838 -11.1918 -6.4681 23 1 -1.4373 -11.1730 -4.0477 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8902 0.5135 27 1 4.2059 1.8027 0.0057 28 1 2.3811 -3.1881 0.5260 29 1 0.7217 -2.5441 0.5181 30 1 0.8092 -2.3490 -1.9522 31 1 2.4686 -2.9931 -1.9444 32 1 0.1135 -4.4314 -0.9090 33 1 0.0883 -4.2269 -3.3309 34 1 1.7479 -4.8702 -3.3224 35 1 -0.7444 -6.0559 -4.6628 36 1 0.8531 -6.8358 -4.7530 37 1 -1.1493 -8.6122 -7.2824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000577386557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:23 Heat of formation + Delta-G solvation = 48.889951 kcal Electronic energy + Delta-G solvation = -18154.734203 eV Core-core repulsion = 15251.136937 eV Total energy + Delta-G solvation = -2903.597265 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.16752 -37.55865 -35.76644 -33.98678 -33.10436 -31.59421 -30.05933 -27.29429 -25.87515 -24.76712 -22.86678 -22.24769 -21.64311 -19.08857 -18.35281 -17.14713 -16.44244 -16.01657 -15.46610 -15.04739 -14.73848 -14.39125 -14.23505 -13.82749 -13.50759 -13.09408 -12.87727 -12.66677 -12.58171 -12.49198 -12.12246 -11.97227 -11.71715 -11.59831 -11.27286 -11.10907 -10.96448 -10.70424 -10.54933 -10.26933 -9.90459 -9.61074 -9.46995 -9.24771 -8.94890 -8.48168 -8.38778 -6.11360 -4.14666 0.44604 1.11268 1.50335 2.52075 3.27930 3.35102 3.39753 3.72689 3.82464 3.94412 4.11471 4.40178 4.71498 4.79572 4.86802 4.90345 4.98599 5.11531 5.26821 5.32379 5.38966 5.45256 5.54020 5.59611 5.68331 5.82216 5.85246 5.98380 6.06828 6.34866 6.46483 6.99709 7.38831 7.41883 7.45574 7.50886 7.83804 8.21039 8.57135 8.90152 9.50997 10.99528 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034670 B = 0.002771 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.416589 B =10101.842787 C =10394.413449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.056 3.944 3 N -0.468 5.468 4 C 0.012 3.988 5 S 0.122 5.878 6 C -0.210 4.210 7 C -0.042 4.042 8 C 0.066 3.934 9 N -0.694 5.694 10 C 0.067 3.933 11 C 0.009 3.991 12 H 0.099 0.901 13 C 0.255 3.745 14 N -0.479 5.479 15 C 0.031 3.969 16 C -0.527 4.527 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.892 3.108 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.274 1.274 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.198 0.802 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.035 0.965 31 H 0.072 0.928 32 H 0.342 0.658 33 H 0.050 0.950 34 H 0.077 0.923 35 H 0.037 0.963 36 H 0.026 0.974 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.645 19.049 12.115 23.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.076 4.076 3 N -0.182 5.182 4 C -0.286 4.286 5 S 0.376 5.624 6 C -0.331 4.331 7 C -0.082 4.082 8 C -0.064 4.064 9 N -0.325 5.325 10 C -0.063 4.063 11 C -0.013 4.013 12 H 0.117 0.883 13 C -0.062 4.062 14 N -0.155 5.155 15 C -0.007 4.007 16 C -0.565 4.565 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.530 5.530 20 Si 0.719 3.281 21 H -0.205 1.205 22 H -0.211 1.211 23 H -0.198 1.198 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.214 0.786 28 H 0.104 0.896 29 H 0.104 0.896 30 H 0.053 0.947 31 H 0.091 0.909 32 H 0.160 0.840 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.055 0.945 36 H 0.045 0.955 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.176 17.736 12.704 22.966 hybrid contribution -2.242 -0.034 -0.611 2.324 sum 4.934 17.703 12.092 21.999 Atomic orbital electron populations 1.20377 0.87030 1.03296 1.03097 1.20257 0.98310 0.86175 1.02827 1.66181 1.05081 1.31689 1.15221 1.28261 0.95257 1.00165 1.04889 1.84164 1.07221 1.03361 1.67656 1.25697 0.94969 1.00708 1.11760 1.20051 1.01753 0.88259 0.98130 1.21892 1.00562 0.88923 0.94998 1.60480 1.35120 1.21317 1.15574 1.22069 1.01319 0.94358 0.88529 1.19218 0.92604 0.88720 1.00718 0.88266 1.28807 0.93232 0.92630 0.91531 1.80937 1.11752 1.11218 1.11627 1.19168 0.97897 0.96950 0.86711 1.21142 1.39695 1.02822 0.92820 0.92477 1.24958 0.95738 0.97852 0.95445 1.69940 1.47162 1.38489 0.97445 0.86587 0.79695 0.84115 0.77673 1.20469 1.21137 1.19836 0.90529 0.90531 0.90748 0.78566 0.89581 0.89554 0.94692 0.90905 0.84029 0.93143 0.90473 0.94452 0.95550 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.06 36.01 0.36 -0.27 16 2 C 0.06 0.57 6.74 -84.22 -0.57 0.00 16 3 N -0.47 -5.11 10.53 -11.90 -0.13 -5.23 16 4 C 0.01 0.10 12.23 51.58 0.63 0.73 16 5 S 0.12 1.04 23.22 -107.50 -2.50 -1.45 16 6 C -0.21 -2.01 5.84 -35.92 -0.21 -2.22 16 7 C -0.04 -0.38 5.69 -27.88 -0.16 -0.53 16 8 C 0.07 0.68 5.67 -3.82 -0.02 0.66 16 9 N -0.69 -8.32 6.20 -113.79 -0.71 -9.03 16 10 C 0.07 0.95 5.05 -3.82 -0.02 0.93 16 11 C 0.01 0.17 2.35 -93.40 -0.22 -0.05 16 12 H 0.10 1.61 8.14 -51.93 -0.42 1.18 16 13 C 0.25 5.24 13.67 -20.79 -0.28 4.96 16 14 N -0.48 -10.79 18.53 42.11 0.78 -10.01 16 15 C 0.03 0.71 4.42 -27.89 -0.12 0.59 16 16 C -0.53 -13.88 8.60 -34.44 -0.30 -14.18 16 17 H 0.06 1.50 7.59 -52.48 -0.40 1.10 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -25.39 13.29 55.43 0.74 -24.66 16 20 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.08 0.50 6.71 -51.92 -0.35 0.15 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.20 1.02 8.06 -52.48 -0.42 0.60 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.09 0.66 6.75 -51.93 -0.35 0.31 16 30 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.34 3.54 8.73 -39.29 -0.34 3.20 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 335.99 15.07 5.06 5.06 Total: -1.00 -31.52 335.99 -8.00 -39.52 By element: Atomic # 1 Polarization: 2.65 SS G_CDS: -5.23 Total: -2.57 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -1.01 Total: -7.78 kcal Atomic # 7 Polarization: -49.61 SS G_CDS: 0.69 Total: -48.93 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.50 Total: -1.45 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -31.52 -8.00 -39.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577386557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.411 kcal (2) G-P(sol) polarization free energy of solvation -31.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds