Wall clock time and date at job start Tue Mar 31 2020 00:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31784 * 122.74936 * 2 1 4 4 C 1.29025 * 117.12258 * 179.72958 * 3 2 1 5 5 S 1.70968 * 110.17021 * 359.97438 * 4 3 2 6 6 C 1.33641 * 122.75115 * 179.70289 * 2 1 3 7 7 C 1.50700 * 126.03597 * 0.25055 * 6 2 1 8 8 C 1.53007 * 109.47143 * 90.00096 * 7 6 2 9 9 N 1.46893 * 109.47226 * 179.97438 * 8 7 6 10 10 C 1.46898 * 111.00181 * 180.02562 * 9 8 7 11 11 C 1.53003 * 109.47390 * 180.02562 * 10 9 8 12 12 H 1.09002 * 109.47195 * 54.99267 * 11 10 9 13 13 C 1.47208 * 109.46640 * 294.99911 * 11 10 9 14 14 N 8.07954 * 93.52846 * 192.07675 * 2 1 3 15 15 C 1.52996 * 109.47257 * 174.99884 * 11 10 9 16 16 C 1.50698 * 109.47145 * 184.99547 * 15 11 10 17 17 H 1.08006 * 120.00053 * 0.02562 * 16 15 11 18 18 C 1.37875 * 120.00110 * 179.97438 * 16 15 11 19 19 N 1.31519 * 119.99926 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00127 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.46968 * 90.00464 * 20 18 16 22 22 H 1.48500 * 109.47012 * 210.00049 * 20 18 16 23 23 H 1.48494 * 109.47207 * 329.99978 * 20 18 16 24 24 H 1.08994 * 109.47218 * 90.03005 * 1 2 3 25 25 H 1.09007 * 109.46702 * 210.02827 * 1 2 3 26 26 H 1.08999 * 109.46968 * 330.02330 * 1 2 3 27 27 H 1.08008 * 124.91196 * 179.97438 * 4 3 2 28 28 H 1.09000 * 109.46916 * 209.99905 * 7 6 2 29 29 H 1.08999 * 109.47044 * 329.99869 * 7 6 2 30 30 H 1.08997 * 109.46409 * 300.00065 * 8 7 6 31 31 H 1.08999 * 109.46626 * 59.99718 * 8 7 6 32 32 H 1.00902 * 111.00524 * 56.04317 * 9 8 7 33 33 H 1.08996 * 109.46731 * 299.99953 * 10 9 8 34 34 H 1.08993 * 109.47014 * 59.99592 * 10 9 8 35 35 H 1.09000 * 109.47176 * 304.99995 * 15 11 10 36 36 H 1.09003 * 109.46900 * 64.99879 * 15 11 10 37 37 H 0.97003 * 119.99994 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9819 0.0054 5 16 3.9332 -0.6730 0.0121 6 6 2.2300 -1.1239 0.0058 7 6 1.6847 -2.5288 0.0078 8 6 1.5055 -3.0084 -1.4341 9 7 0.9746 -4.3780 -1.4322 10 6 0.7898 -4.8729 -2.8029 11 6 0.2362 -6.2986 -2.7601 12 1 -0.6767 -6.3162 -2.1648 13 6 1.2346 -7.1946 -2.1539 14 7 2.0043 -7.8857 -1.6872 15 6 -0.0735 -6.7684 -4.1829 16 6 -0.7319 -8.1230 -4.1325 17 1 -0.9119 -8.6009 -3.1808 18 6 -1.1055 -8.7518 -5.3012 19 7 -0.8868 -8.1697 -6.4601 20 14 -1.9222 -10.4307 -5.2388 21 1 -3.3950 -10.2616 -5.1510 22 1 -1.5838 -11.1918 -6.4681 23 1 -1.4373 -11.1730 -4.0477 24 1 -0.3633 -0.0005 -1.0276 25 1 -0.3633 -0.8898 0.5143 26 1 -0.3633 0.8902 0.5135 27 1 4.2059 1.8027 0.0057 28 1 2.3811 -3.1881 0.5260 29 1 0.7217 -2.5441 0.5181 30 1 0.8092 -2.3490 -1.9522 31 1 2.4686 -2.9931 -1.9444 32 1 0.1135 -4.4314 -0.9090 33 1 0.0883 -4.2269 -3.3309 34 1 1.7479 -4.8702 -3.3224 35 1 -0.7444 -6.0559 -4.6628 36 1 0.8531 -6.8358 -4.7530 37 1 -1.1493 -8.6122 -7.2824 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577386557.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:22 Heat of formation + Delta-G solvation = 28.848023 kcal Electronic energy + Delta-G solvation = -18155.603286 eV Core-core repulsion = 15251.136937 eV Total energy + Delta-G solvation = -2904.466348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.03 seconds Orbital eigenvalues (eV) -40.85809 -38.85743 -37.03517 -35.57505 -34.47699 -32.94470 -30.97367 -28.59794 -27.00475 -25.57609 -24.21910 -23.47434 -22.94418 -19.78170 -19.03980 -18.61635 -18.33389 -16.77739 -16.66918 -16.30551 -15.86081 -15.58491 -15.35283 -14.82660 -14.47034 -14.29856 -14.24676 -13.73577 -13.65281 -13.47993 -13.37759 -13.15953 -13.09258 -12.96814 -12.70961 -12.47658 -12.36629 -12.30386 -11.91084 -11.72748 -11.39133 -11.14384 -10.59763 -10.54224 -10.19035 -9.63130 -9.33735 -8.18914 -6.27035 -0.22782 0.46210 0.83549 1.40791 1.43106 1.52081 1.82013 2.10043 2.16496 2.42195 3.13205 3.17072 3.36297 3.40554 3.99913 4.07161 4.20737 4.24394 4.31112 4.40467 4.44355 4.66897 4.76170 4.78997 4.80406 4.85269 4.98039 5.01997 5.09295 5.14032 5.42350 5.48157 5.63295 5.80090 5.99182 6.21909 6.55783 6.77817 6.84684 6.95587 7.41749 8.92006 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.034670 B = 0.002771 C = 0.002693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 807.416589 B =10101.842787 C =10394.413449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.044 3.956 3 N -0.500 5.500 4 C 0.017 3.983 5 S 0.129 5.871 6 C -0.224 4.224 7 C -0.033 4.033 8 C 0.072 3.928 9 N -0.700 5.700 10 C 0.079 3.921 11 C 0.020 3.980 12 H 0.124 0.876 13 C 0.266 3.734 14 N -0.516 5.516 15 C 0.037 3.963 16 C -0.538 4.538 17 H 0.055 0.945 18 C 0.010 3.990 19 N -0.924 5.924 20 Si 0.949 3.051 21 H -0.266 1.266 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.079 0.921 25 H 0.091 0.909 26 H 0.073 0.927 27 H 0.226 0.774 28 H 0.079 0.921 29 H 0.102 0.898 30 H 0.044 0.956 31 H 0.060 0.940 32 H 0.354 0.646 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.036 0.964 36 H -0.001 1.001 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 19.702 13.041 23.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.087 4.087 3 N -0.214 5.214 4 C -0.281 4.281 5 S 0.383 5.617 6 C -0.345 4.345 7 C -0.073 4.073 8 C -0.058 4.058 9 N -0.332 5.332 10 C -0.051 4.051 11 C -0.002 4.002 12 H 0.141 0.859 13 C -0.050 4.050 14 N -0.193 5.193 15 C -0.002 4.002 16 C -0.576 4.576 17 H 0.073 0.927 18 C -0.189 4.189 19 N -0.564 5.564 20 Si 0.774 3.226 21 H -0.191 1.191 22 H -0.212 1.212 23 H -0.201 1.201 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.091 0.909 27 H 0.242 0.758 28 H 0.097 0.903 29 H 0.121 0.879 30 H 0.062 0.938 31 H 0.079 0.921 32 H 0.174 0.826 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.054 0.946 36 H 0.017 0.983 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.516 18.394 13.649 23.814 hybrid contribution -1.986 -0.189 -0.889 2.184 sum 4.530 18.205 12.760 22.689 Atomic orbital electron populations 1.20447 0.85912 1.03982 1.03465 1.20602 0.99306 0.86202 1.02629 1.66240 1.06089 1.32353 1.16752 1.28799 0.95158 1.01003 1.03119 1.84139 1.06811 1.03424 1.67364 1.25771 0.95452 1.00789 1.12494 1.19958 1.02422 0.87754 0.97205 1.21837 1.00003 0.87992 0.95939 1.60376 1.36029 1.22561 1.14253 1.21844 1.00983 0.92244 0.90029 1.19192 0.93174 0.90098 0.97697 0.85858 1.29338 0.92855 0.92080 0.90763 1.80938 1.13110 1.12384 1.12893 1.18994 0.96121 0.95663 0.89421 1.21570 1.39180 1.04283 0.92603 0.92662 1.25721 0.96608 1.01150 0.95371 1.70036 1.48487 1.39948 0.97964 0.85691 0.79423 0.80171 0.77269 1.19078 1.21152 1.20094 0.90236 0.89083 0.90851 0.75774 0.90269 0.87942 0.93822 0.92116 0.82627 0.91362 0.91558 0.94566 0.98281 0.92746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.13 10.06 71.24 0.72 -0.42 16 2 C 0.04 0.84 6.74 41.52 0.28 1.12 16 3 N -0.50 -10.32 10.53 -191.55 -2.02 -12.34 16 4 C 0.02 0.26 12.23 130.65 1.60 1.86 16 5 S 0.13 2.04 23.22 -56.49 -1.31 0.73 16 6 C -0.22 -3.98 5.84 24.64 0.14 -3.83 16 7 C -0.03 -0.54 5.69 29.85 0.17 -0.37 16 8 C 0.07 1.34 5.67 86.31 0.49 1.83 16 9 N -0.70 -15.26 6.20 -513.91 -3.19 -18.45 16 10 C 0.08 2.09 5.05 86.30 0.44 2.53 16 11 C 0.02 0.69 2.35 -12.60 -0.03 0.66 16 12 H 0.12 3.66 8.14 -2.39 -0.02 3.64 16 13 C 0.27 10.70 13.67 89.46 1.22 11.93 16 14 N -0.52 -23.02 18.53 19.99 0.37 -22.65 16 15 C 0.04 1.66 4.42 29.85 0.13 1.79 16 16 C -0.54 -28.10 8.60 25.60 0.22 -27.88 16 17 H 0.06 2.85 7.59 -2.91 -0.02 2.83 16 18 C 0.01 0.56 5.46 84.65 0.46 1.02 16 19 N -0.92 -52.78 13.29 21.45 0.28 -52.50 16 20 Si 0.95 43.08 29.54 68.60 2.03 45.11 16 21 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 22 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 25 H 0.09 0.99 6.71 -2.38 -0.02 0.98 16 26 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 27 H 0.23 1.86 8.06 -2.91 -0.02 1.84 16 28 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.30 6.75 -2.39 -0.02 1.29 16 30 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.35 6.29 8.73 -89.69 -0.78 5.51 16 33 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 37 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -66.80 335.99 2.30 -64.50 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: 0.29 Total: 5.37 kcal Atomic # 6 Polarization: -15.60 SS G_CDS: 5.84 Total: -9.76 kcal Atomic # 7 Polarization: -101.39 SS G_CDS: -4.55 Total: -105.93 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: 2.04 SS G_CDS: -1.31 Total: 0.73 kcal Total: -66.80 2.30 -64.50 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577386557.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.344 kcal (2) G-P(sol) polarization free energy of solvation -66.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.03 seconds