Wall clock time and date at job start Tue Mar 31 2020 00:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29025 * 124.91168 * 2 1 4 4 C 1.31784 * 117.12258 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.74936 * 179.72958 * 4 3 2 6 6 C 1.33641 * 114.49889 * 0.02562 * 4 3 2 7 7 C 1.50700 * 126.03597 * 179.97438 * 6 4 3 8 8 N 1.46903 * 109.47087 * 89.99854 * 7 6 4 9 9 C 1.46896 * 111.00105 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47131 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47379 * 305.00044 * 10 9 8 12 12 C 1.47201 * 109.46711 * 65.00735 * 10 9 8 13 13 N 7.16093 * 131.30347 * 131.53794 * 2 1 3 14 14 C 1.53002 * 109.46864 * 185.00185 * 10 9 8 15 15 C 1.50705 * 109.46946 * 175.00313 * 14 10 9 16 16 H 1.08001 * 119.99883 * 359.97438 * 15 14 10 17 17 C 1.37878 * 120.00039 * 180.02562 * 15 14 10 18 18 N 1.31516 * 119.99676 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99869 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46958 * 90.00541 * 19 17 15 21 21 H 1.48500 * 109.47239 * 209.99978 * 19 17 15 22 22 H 1.48493 * 109.47426 * 330.00520 * 19 17 15 23 23 S 1.70968 * 124.91810 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46775 * 89.97735 * 1 2 3 25 25 H 1.08990 * 109.46971 * 209.97264 * 1 2 3 26 26 H 1.09001 * 109.47018 * 329.97865 * 1 2 3 27 27 H 1.08994 * 109.47218 * 90.03005 * 5 4 3 28 28 H 1.09007 * 109.46702 * 210.02827 * 5 4 3 29 29 H 1.08999 * 109.46968 * 330.02330 * 5 4 3 30 30 H 1.09000 * 109.46916 * 209.99905 * 7 6 4 31 31 H 1.08999 * 109.47044 * 329.99869 * 7 6 4 32 32 H 1.00897 * 111.00056 * 303.95623 * 8 7 6 33 33 H 1.08999 * 109.47331 * 300.00549 * 9 8 7 34 34 H 1.09007 * 109.46944 * 60.00284 * 9 8 7 35 35 H 1.09000 * 109.47680 * 295.00118 * 14 10 9 36 36 H 1.09000 * 109.47238 * 55.00955 * 14 10 9 37 37 H 0.96999 * 119.99319 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 -0.0054 6 6 3.9354 -0.4005 0.0004 7 6 5.3575 -0.8993 0.0004 8 7 5.8196 -1.0614 1.3854 9 6 7.2051 -1.5479 1.4246 10 6 7.6500 -1.7033 2.8802 11 1 7.5056 -0.7601 3.4070 12 6 6.8496 -2.7550 3.5283 13 7 6.2336 -3.5672 4.0266 14 6 9.1299 -2.0897 2.9226 15 6 9.5995 -2.1229 4.3542 16 1 8.9115 -1.8912 5.1537 17 6 10.9079 -2.4481 4.6431 18 7 11.3178 -2.4766 5.8924 19 14 12.0981 -2.8482 3.2601 20 1 12.7685 -1.6025 2.8081 21 1 13.1186 -3.8104 3.7481 22 1 11.3536 -3.4496 2.1248 23 16 2.4857 -1.4019 0.0006 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.7675 2.3055 1.0208 28 1 5.4429 1.7199 -0.5185 29 1 4.0901 2.8769 -0.5230 30 1 5.4058 -1.8593 -0.5135 31 1 5.9949 -0.1797 -0.5134 32 1 5.7238 -0.1998 1.9017 33 1 7.2658 -2.5125 0.9207 34 1 7.8556 -0.8331 0.9206 35 1 9.2613 -3.0744 2.4741 36 1 9.7130 -1.3561 2.3659 37 1 12.2382 -2.7058 6.0957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584227203.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:26 Heat of formation + Delta-G solvation = 53.835608 kcal Electronic energy + Delta-G solvation = -18398.508557 eV Core-core repulsion = 15495.125752 eV Total energy + Delta-G solvation = -2903.382805 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.13102 -37.57088 -35.58965 -33.87967 -33.01180 -31.70748 -29.58665 -28.99990 -26.72186 -24.12987 -22.89339 -22.57913 -21.45553 -19.02677 -18.12081 -17.13575 -16.88482 -15.62592 -15.34205 -15.07988 -14.79443 -14.23938 -13.99650 -13.62441 -13.53702 -13.28492 -13.06347 -12.90957 -12.50589 -12.40223 -12.28892 -12.21382 -12.09262 -11.89405 -11.43267 -11.28323 -11.14462 -10.80283 -10.44077 -10.01651 -9.83611 -9.74302 -9.39287 -9.34293 -8.78064 -8.64041 -8.46632 -6.12672 -4.13566 0.52274 1.20150 1.63843 2.58711 3.23640 3.32950 3.33472 3.68629 3.77275 3.87090 4.18311 4.36114 4.66389 4.74726 4.79250 4.90216 5.07209 5.12809 5.13976 5.22022 5.30548 5.38525 5.44805 5.52115 5.58257 5.65207 5.76090 5.81602 6.11389 6.15223 6.25202 6.84839 6.88726 7.09110 7.28504 7.59320 7.61173 8.38408 8.52962 8.91049 9.46946 11.00484 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.003312 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.522453 B = 8452.307455 C = 8797.225606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.036 3.964 3 N -0.474 5.474 4 C 0.067 3.933 5 C -0.080 4.080 6 C -0.218 4.218 7 C 0.137 3.863 8 N -0.688 5.688 9 C 0.064 3.936 10 C 0.020 3.980 11 H 0.105 0.895 12 C 0.251 3.749 13 N -0.469 5.469 14 C -0.004 4.004 15 C -0.529 4.529 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.264 1.264 23 S 0.142 5.858 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.056 0.944 32 H 0.346 0.654 33 H 0.079 0.921 34 H 0.052 0.948 35 H 0.026 0.974 36 H 0.033 0.967 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.306 7.509 -17.124 24.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.241 4.241 3 N -0.189 5.189 4 C -0.066 4.066 5 C -0.140 4.140 6 C -0.339 4.339 7 C 0.006 3.994 8 N -0.320 5.320 9 C -0.066 4.066 10 C -0.002 4.002 11 H 0.123 0.877 12 C -0.066 4.066 13 N -0.145 5.145 14 C -0.043 4.043 15 C -0.566 4.566 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.188 1.188 23 S 0.398 5.602 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.096 0.904 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.074 0.926 32 H 0.164 0.836 33 H 0.097 0.903 34 H 0.070 0.930 35 H 0.044 0.956 36 H 0.051 0.949 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.850 5.029 -16.184 24.614 hybrid contribution 2.048 1.538 -0.895 2.713 sum -15.802 6.567 -17.080 24.177 Atomic orbital electron populations 1.20419 0.85337 1.04192 1.03689 1.26941 1.01703 0.91603 1.03898 1.66134 1.04448 1.31838 1.16494 1.20166 0.90274 0.94015 1.02192 1.20389 0.95760 0.94638 1.03178 1.25565 0.99942 0.95427 1.13005 1.20211 0.87506 1.00611 0.91051 1.60531 1.22834 1.36684 1.11930 1.22130 0.87102 1.01006 0.96369 1.18944 0.95109 0.93894 0.92258 0.87740 1.28622 0.91733 0.93726 0.92535 1.80943 1.12227 1.11413 1.09953 1.19635 0.88098 0.97356 0.99255 1.21026 0.96661 1.48158 0.90799 0.90777 1.24998 0.98198 0.94541 0.95402 1.69908 1.17304 1.48353 1.17897 0.86812 0.81132 0.78709 0.82869 1.20052 1.21300 1.18848 1.84063 0.97085 1.11604 1.67441 0.89757 0.90125 0.89391 0.90396 0.90711 0.90707 0.89813 0.92646 0.83578 0.90259 0.92959 0.95612 0.94914 0.92540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.53 10.46 36.01 0.38 -0.15 16 2 C 0.04 0.38 7.39 -13.45 -0.10 0.28 16 3 N -0.47 -5.83 10.53 -8.06 -0.08 -5.91 16 4 C 0.07 0.76 6.74 -84.22 -0.57 0.19 16 5 C -0.08 -0.70 10.06 36.01 0.36 -0.34 16 6 C -0.22 -2.43 6.10 -35.92 -0.22 -2.65 16 7 C 0.14 1.40 5.90 -4.97 -0.03 1.37 16 8 N -0.69 -8.30 6.19 -115.06 -0.71 -9.01 16 9 C 0.06 0.82 5.05 -3.83 -0.02 0.80 16 10 C 0.02 0.34 2.35 -93.41 -0.22 0.12 16 11 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 12 C 0.25 5.16 13.66 -20.80 -0.28 4.87 16 13 N -0.47 -10.68 18.53 42.10 0.78 -9.90 16 14 C 0.00 -0.09 3.49 -27.88 -0.10 -0.19 16 15 C -0.53 -14.10 9.15 -34.44 -0.32 -14.41 16 16 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -26.96 13.96 55.43 0.77 -26.18 16 19 Si 0.88 20.41 27.47 -169.99 -4.67 15.74 16 20 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 23 S 0.14 1.51 23.18 -107.50 -2.49 -0.98 16 24 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 28 H 0.07 0.54 6.71 -51.92 -0.35 0.20 16 29 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.47 6.75 -51.93 -0.35 0.12 16 32 H 0.35 3.92 8.72 -39.29 -0.34 3.58 16 33 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.05 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 36 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 37 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 332.82 15.07 5.02 5.02 Total: -1.00 -32.96 332.82 -7.79 -40.75 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.19 Total: -1.29 kcal Atomic # 6 Polarization: -7.01 SS G_CDS: -1.21 Total: -8.22 kcal Atomic # 7 Polarization: -51.77 SS G_CDS: 0.76 Total: -51.01 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.67 Total: 15.74 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.49 Total: -0.98 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.96 -7.79 -40.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584227203.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.585 kcal (2) G-P(sol) polarization free energy of solvation -32.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds