Wall clock time and date at job start Tue Mar 31 2020 00:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.29025 * 124.91168 * 2 1 4 4 C 1.31784 * 117.12258 * 179.97438 * 3 2 1 5 5 C 1.50700 * 122.74936 * 179.72958 * 4 3 2 6 6 C 1.33641 * 114.49889 * 0.02562 * 4 3 2 7 7 C 1.50700 * 126.03597 * 179.97438 * 6 4 3 8 8 N 1.46903 * 109.47087 * 89.99854 * 7 6 4 9 9 C 1.46896 * 111.00105 * 179.97438 * 8 7 6 10 10 C 1.52998 * 109.47131 * 179.97438 * 9 8 7 11 11 H 1.08994 * 109.47379 * 305.00044 * 10 9 8 12 12 C 1.47201 * 109.46711 * 65.00735 * 10 9 8 13 13 N 7.16093 * 131.30347 * 131.53794 * 2 1 3 14 14 C 1.53002 * 109.46864 * 185.00185 * 10 9 8 15 15 C 1.50705 * 109.46946 * 175.00313 * 14 10 9 16 16 H 1.08001 * 119.99883 * 359.97438 * 15 14 10 17 17 C 1.37878 * 120.00039 * 180.02562 * 15 14 10 18 18 N 1.31516 * 119.99676 * 179.97438 * 17 15 14 19 19 Si 1.86797 * 119.99869 * 359.97438 * 17 15 14 20 20 H 1.48507 * 109.46958 * 90.00541 * 19 17 15 21 21 H 1.48500 * 109.47239 * 209.99978 * 19 17 15 22 22 H 1.48493 * 109.47426 * 330.00520 * 19 17 15 23 23 S 1.70968 * 124.91810 * 179.97438 * 2 1 3 24 24 H 1.09005 * 109.46775 * 89.97735 * 1 2 3 25 25 H 1.08990 * 109.46971 * 209.97264 * 1 2 3 26 26 H 1.09001 * 109.47018 * 329.97865 * 1 2 3 27 27 H 1.08994 * 109.47218 * 90.03005 * 5 4 3 28 28 H 1.09007 * 109.46702 * 210.02827 * 5 4 3 29 29 H 1.08999 * 109.46968 * 330.02330 * 5 4 3 30 30 H 1.09000 * 109.46916 * 209.99905 * 7 6 4 31 31 H 1.08999 * 109.47044 * 329.99869 * 7 6 4 32 32 H 1.00897 * 111.00056 * 303.95623 * 8 7 6 33 33 H 1.08999 * 109.47331 * 300.00549 * 9 8 7 34 34 H 1.09007 * 109.46944 * 60.00284 * 9 8 7 35 35 H 1.09000 * 109.47680 * 295.00118 * 14 10 9 36 36 H 1.09000 * 109.47238 * 55.00955 * 14 10 9 37 37 H 0.96999 * 119.99319 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2455 1.0581 0.0000 4 6 3.5512 0.8794 0.0005 5 6 4.5307 2.0247 -0.0054 6 6 3.9354 -0.4005 0.0004 7 6 5.3575 -0.8993 0.0004 8 7 5.8196 -1.0614 1.3854 9 6 7.2051 -1.5479 1.4246 10 6 7.6500 -1.7033 2.8802 11 1 7.5056 -0.7601 3.4070 12 6 6.8496 -2.7550 3.5283 13 7 6.2336 -3.5672 4.0266 14 6 9.1299 -2.0897 2.9226 15 6 9.5995 -2.1229 4.3542 16 1 8.9115 -1.8912 5.1537 17 6 10.9079 -2.4481 4.6431 18 7 11.3178 -2.4766 5.8924 19 14 12.0981 -2.8482 3.2601 20 1 12.7685 -1.6025 2.8081 21 1 13.1186 -3.8104 3.7481 22 1 11.3536 -3.4496 2.1248 23 16 2.4857 -1.4019 0.0006 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8898 0.5142 27 1 4.7675 2.3055 1.0208 28 1 5.4429 1.7199 -0.5185 29 1 4.0901 2.8769 -0.5230 30 1 5.4058 -1.8593 -0.5135 31 1 5.9949 -0.1797 -0.5134 32 1 5.7238 -0.1998 1.9017 33 1 7.2658 -2.5125 0.9207 34 1 7.8556 -0.8331 0.9206 35 1 9.2613 -3.0744 2.4741 36 1 9.7130 -1.3561 2.3659 37 1 12.2382 -2.7058 6.0957 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584227203.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:25 Heat of formation + Delta-G solvation = 31.015013 kcal Electronic energy + Delta-G solvation = -18399.498132 eV Core-core repulsion = 15495.125752 eV Total energy + Delta-G solvation = -2904.372381 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.92078 -38.84649 -36.85711 -35.47404 -34.29148 -33.13832 -30.43053 -29.89744 -28.14848 -25.15039 -23.76095 -23.52343 -23.21313 -19.85051 -18.93421 -18.87415 -18.44381 -16.63206 -16.29317 -16.19758 -15.97866 -15.46444 -15.22359 -14.83341 -14.47032 -14.31027 -14.09354 -13.97474 -13.86246 -13.65119 -13.35083 -13.20719 -13.09785 -12.94767 -12.83416 -12.62336 -12.34769 -12.09725 -11.97799 -11.65021 -11.58406 -11.27509 -10.71850 -10.57471 -10.22678 -9.56623 -9.30560 -8.23613 -6.29367 -0.26751 0.43173 0.84912 1.43596 1.47260 1.57271 1.78455 2.07700 2.14782 2.42396 3.12631 3.17463 3.24718 3.37194 3.92179 4.04940 4.10719 4.21292 4.37661 4.50737 4.55428 4.64009 4.65653 4.70805 4.79361 4.83131 4.89705 4.94543 5.01607 5.11593 5.25603 5.41669 5.47471 5.64744 5.97933 6.27146 6.42750 6.78748 6.80271 6.92181 7.35236 8.93555 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031435 B = 0.003312 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 890.522453 B = 8452.307455 C = 8797.225606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.036 3.964 3 N -0.503 5.503 4 C 0.056 3.944 5 C -0.079 4.079 6 C -0.229 4.229 7 C 0.142 3.858 8 N -0.703 5.703 9 C 0.077 3.923 10 C 0.024 3.976 11 H 0.116 0.884 12 C 0.262 3.738 13 N -0.518 5.518 14 C -0.002 4.002 15 C -0.531 4.531 16 H 0.027 0.973 17 C 0.001 3.999 18 N -0.956 5.956 19 Si 0.951 3.049 20 H -0.256 1.256 21 H -0.298 1.298 22 H -0.235 1.235 23 S 0.129 5.871 24 H 0.101 0.899 25 H 0.094 0.906 26 H 0.090 0.910 27 H 0.081 0.919 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.350 0.650 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.027 0.973 36 H 0.066 0.934 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.037 8.293 -20.197 27.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.242 4.242 3 N -0.219 5.219 4 C -0.076 4.076 5 C -0.138 4.138 6 C -0.351 4.351 7 C 0.012 3.988 8 N -0.336 5.336 9 C -0.053 4.053 10 C 0.002 3.998 11 H 0.133 0.867 12 C -0.055 4.055 13 N -0.196 5.196 14 C -0.041 4.041 15 C -0.569 4.569 16 H 0.045 0.955 17 C -0.196 4.196 18 N -0.597 5.597 19 Si 0.773 3.227 20 H -0.180 1.180 21 H -0.225 1.225 22 H -0.158 1.158 23 S 0.385 5.615 24 H 0.120 0.880 25 H 0.113 0.887 26 H 0.108 0.892 27 H 0.099 0.901 28 H 0.111 0.889 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.168 0.832 33 H 0.099 0.901 34 H 0.105 0.895 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -17.609 5.829 -19.285 26.757 hybrid contribution 1.843 1.329 0.153 2.278 sum -15.766 7.158 -19.132 25.804 Atomic orbital electron populations 1.20590 0.83149 1.04991 1.05027 1.27540 1.03080 0.91103 1.02453 1.66208 1.05187 1.32642 1.17877 1.20584 0.90465 0.94891 1.01704 1.20467 0.95872 0.93861 1.03620 1.25702 1.00353 0.95357 1.13672 1.20227 0.87222 1.01342 0.90023 1.60434 1.22446 1.37311 1.13415 1.21981 0.88211 1.02267 0.92850 1.19090 0.92524 0.92886 0.95302 0.86674 1.29441 0.91062 0.93492 0.91458 1.80939 1.13905 1.13075 1.11640 1.19586 0.90613 0.98477 0.95453 1.21427 0.95869 1.46675 0.92976 0.95483 1.26079 1.00697 0.94626 0.98173 1.70101 1.17866 1.50806 1.20926 0.85660 0.78190 0.79039 0.79787 1.18014 1.22457 1.15828 1.84068 0.97662 1.12104 1.67688 0.88043 0.88683 0.89170 0.90076 0.88916 0.90721 0.89735 0.90214 0.83150 0.90100 0.89536 0.95429 0.91580 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.46 71.24 0.75 -0.21 16 2 C 0.04 0.72 7.39 88.52 0.65 1.37 16 3 N -0.50 -11.85 10.53 -179.40 -1.89 -13.74 16 4 C 0.06 1.19 6.74 41.52 0.28 1.47 16 5 C -0.08 -1.21 10.06 71.24 0.72 -0.49 16 6 C -0.23 -4.70 6.10 24.64 0.15 -4.55 16 7 C 0.14 2.48 5.90 85.56 0.50 2.98 16 8 N -0.70 -15.00 6.19 -517.93 -3.21 -18.20 16 9 C 0.08 1.68 5.05 86.30 0.44 2.12 16 10 C 0.02 0.76 2.35 -12.60 -0.03 0.73 16 11 H 0.12 3.47 8.14 -2.39 -0.02 3.45 16 12 C 0.26 10.61 13.66 89.46 1.22 11.83 16 13 N -0.52 -23.84 18.53 19.99 0.37 -23.46 16 14 C 0.00 -0.09 3.49 29.85 0.10 0.02 16 15 C -0.53 -28.37 9.15 25.60 0.23 -28.14 16 16 H 0.03 1.64 7.84 -2.91 -0.02 1.62 16 17 C 0.00 0.04 5.47 84.65 0.46 0.50 16 18 N -0.96 -59.14 13.96 21.45 0.30 -58.84 16 19 Si 0.95 40.83 27.47 68.60 1.88 42.72 16 20 H -0.26 -10.16 7.11 99.48 0.71 -9.45 16 21 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.24 -8.96 6.54 99.48 0.65 -8.31 16 23 S 0.13 2.61 23.18 -56.49 -1.31 1.30 16 24 H 0.10 0.91 8.14 -2.38 -0.02 0.90 16 25 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.09 1.04 6.71 -2.38 -0.02 1.03 16 29 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.08 1.02 6.75 -2.39 -0.02 1.00 16 32 H 0.35 7.00 8.72 -89.70 -0.78 6.22 16 33 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 34 H 0.09 1.37 8.14 -2.38 -0.02 1.36 16 35 H 0.03 1.08 7.20 -2.39 -0.02 1.06 16 36 H 0.07 2.20 7.57 -2.39 -0.02 2.19 16 37 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -73.99 332.82 1.88 -72.11 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 0.25 Total: 10.49 kcal Atomic # 6 Polarization: -17.85 SS G_CDS: 5.48 Total: -12.37 kcal Atomic # 7 Polarization: -109.82 SS G_CDS: -4.43 Total: -114.25 kcal Atomic # 14 Polarization: 40.83 SS G_CDS: 1.88 Total: 42.72 kcal Atomic # 16 Polarization: 2.61 SS G_CDS: -1.31 Total: 1.30 kcal Total: -73.99 1.88 -72.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584227203.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.127 kcal (2) G-P(sol) polarization free energy of solvation -73.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds