Wall clock time and date at job start Tue Mar 31 2020 00:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29032 * 124.91559 * 2 1 4 4 C 1.31778 * 117.12868 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.75123 * 180.02562 * 4 3 2 6 6 C 1.33642 * 114.49896 * 359.97438 * 4 3 2 7 7 C 1.50695 * 126.03945 * 180.02562 * 6 4 3 8 8 N 1.46901 * 109.47379 * 90.00084 * 7 6 4 9 9 C 1.46895 * 111.00119 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 7.42077 * 146.67325 * 80.99785 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 S 1.70973 * 124.92087 * 180.31844 * 2 1 3 24 24 H 1.09003 * 109.47108 * 89.97614 * 1 2 3 25 25 H 1.09000 * 109.46852 * 209.97147 * 1 2 3 26 26 H 1.08996 * 109.47138 * 329.97079 * 1 2 3 27 27 H 1.09001 * 109.46786 * 269.99209 * 5 4 3 28 28 H 1.08990 * 109.47354 * 29.99167 * 5 4 3 29 29 H 1.08996 * 109.47125 * 150.00052 * 5 4 3 30 30 H 1.09002 * 109.47190 * 329.99887 * 7 6 4 31 31 H 1.08996 * 109.47247 * 210.00078 * 7 6 4 32 32 H 1.00905 * 110.99468 * 303.95787 * 8 7 6 33 33 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 34 34 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 35 35 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 36 36 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 37 37 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0581 0.0000 4 6 3.5512 0.8795 -0.0005 5 6 4.5307 2.0248 0.0000 6 6 3.9355 -0.4005 -0.0004 7 6 5.3575 -0.8992 -0.0004 8 7 5.8196 -1.0612 1.3846 9 6 7.2055 -1.5467 1.4238 10 6 7.6505 -1.7020 2.8793 11 1 6.9487 -2.3480 3.4069 12 6 7.6825 -0.3803 3.5264 13 7 7.7075 0.6379 4.0268 14 6 9.0475 -2.3246 2.9218 15 6 9.4354 -2.5908 4.3535 16 1 8.7536 -2.3413 5.1531 17 6 10.6582 -3.1586 4.6423 18 7 10.9945 -3.3960 5.8914 19 14 11.8373 -3.5907 3.2593 20 1 12.7209 -2.4300 2.9814 21 1 12.6640 -4.7574 3.6601 22 1 11.0643 -3.9282 2.0371 23 16 2.4857 -1.4019 -0.0078 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 4.7666 2.3015 -1.0276 28 1 4.0906 2.8790 0.5144 29 1 5.4433 1.7221 0.5133 30 1 5.9949 -0.1797 -0.5143 31 1 5.4058 -1.8593 -0.5142 32 1 5.7238 -0.1995 1.9008 33 1 7.8555 -0.8313 0.9199 34 1 7.2671 -2.5112 0.9197 35 1 9.7651 -1.6379 2.4727 36 1 9.0446 -3.2620 2.3659 37 1 11.8549 -3.7951 6.0945 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000584227204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:29 Heat of formation + Delta-G solvation = 53.257521 kcal Electronic energy + Delta-G solvation = -18429.154243 eV Core-core repulsion = 15525.746370 eV Total energy + Delta-G solvation = -2903.407873 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13869 -37.68065 -35.62666 -33.95413 -33.01180 -31.72480 -29.57838 -29.02078 -26.72411 -24.11109 -22.89427 -22.64098 -21.46505 -19.02498 -18.11056 -16.97419 -16.84375 -15.80308 -15.58677 -15.18732 -14.79747 -14.13745 -13.84933 -13.56005 -13.49299 -13.35871 -13.12893 -12.85799 -12.65923 -12.46050 -12.37238 -12.24395 -12.17912 -11.84827 -11.49397 -11.28729 -11.20692 -10.90027 -10.34905 -10.05353 -9.86444 -9.74953 -9.39963 -9.35249 -8.79831 -8.63837 -8.49047 -6.12565 -4.13496 0.51335 1.19092 1.62012 2.58035 3.24963 3.32193 3.33150 3.49237 3.54065 3.86648 4.18013 4.36130 4.62733 4.69563 4.75754 4.87841 5.07058 5.12967 5.19150 5.21986 5.33150 5.38159 5.40002 5.51064 5.53743 5.63971 5.76319 5.93707 6.10174 6.10878 6.30563 6.83926 6.91449 7.08527 7.22089 7.59212 7.61023 8.30072 8.40110 8.90977 9.46955 11.00573 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.003283 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.136227 B = 8526.608771 C = 8714.526814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.036 3.964 3 N -0.473 5.473 4 C 0.067 3.933 5 C -0.079 4.079 6 C -0.218 4.218 7 C 0.136 3.864 8 N -0.686 5.686 9 C 0.064 3.936 10 C 0.017 3.983 11 H 0.117 0.883 12 C 0.236 3.764 13 N -0.466 5.466 14 C -0.003 4.003 15 C -0.529 4.529 16 H 0.074 0.926 17 C 0.071 3.929 18 N -0.897 5.897 19 Si 0.878 3.122 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.262 1.262 23 S 0.144 5.856 24 H 0.084 0.916 25 H 0.080 0.920 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.342 0.658 33 H 0.038 0.962 34 H 0.094 0.906 35 H 0.019 0.981 36 H 0.040 0.960 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.787 3.401 -17.182 24.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.242 4.242 3 N -0.189 5.189 4 C -0.066 4.066 5 C -0.139 4.139 6 C -0.340 4.340 7 C 0.005 3.995 8 N -0.318 5.318 9 C -0.065 4.065 10 C -0.005 4.005 11 H 0.135 0.865 12 C -0.081 4.081 13 N -0.142 5.142 14 C -0.042 4.042 15 C -0.567 4.567 16 H 0.092 0.908 17 C -0.131 4.131 18 N -0.535 5.535 19 Si 0.705 3.295 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.187 1.187 23 S 0.400 5.600 24 H 0.102 0.898 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.090 0.910 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.161 0.839 33 H 0.056 0.944 34 H 0.112 0.888 35 H 0.038 0.962 36 H 0.058 0.942 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -18.375 3.649 -16.246 24.797 hybrid contribution 1.832 0.810 -0.857 2.178 sum -16.544 4.459 -17.103 24.209 Atomic orbital electron populations 1.20421 0.85304 1.04210 1.03693 1.26950 1.01714 0.91579 1.03909 1.66126 1.04426 1.31887 1.16428 1.20163 0.90264 0.94053 1.02099 1.20357 0.95827 0.94883 1.02800 1.25575 0.99977 0.95438 1.12982 1.20225 0.87507 1.00768 0.91040 1.60618 1.22696 1.36577 1.11925 1.22142 0.86848 1.01281 0.96271 1.19069 1.02466 0.86484 0.92467 0.86517 1.29112 0.91619 0.94336 0.92996 1.81009 1.10322 1.13615 1.09296 1.19632 0.89187 0.96112 0.99313 1.21028 1.03102 1.41746 0.90787 0.90783 1.24999 0.97831 0.94905 0.95401 1.69905 1.22270 1.43375 1.17912 0.86809 0.81376 0.78336 0.82959 1.20308 1.21236 1.18677 1.83947 0.96930 1.11558 1.67583 0.89758 0.90077 0.89404 0.90672 0.90452 0.91026 0.92869 0.89386 0.83906 0.94378 0.88780 0.96243 0.94235 0.92536 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.46 36.01 0.38 -0.13 16 2 C 0.04 0.38 7.39 -13.45 -0.10 0.28 16 3 N -0.47 -5.97 10.53 -8.06 -0.08 -6.06 16 4 C 0.07 0.81 6.74 -84.23 -0.57 0.24 16 5 C -0.08 -0.81 9.82 36.01 0.35 -0.45 16 6 C -0.22 -2.47 6.10 -35.92 -0.22 -2.69 16 7 C 0.14 1.41 5.61 -4.98 -0.03 1.39 16 8 N -0.69 -8.52 6.49 -115.07 -0.75 -9.27 16 9 C 0.06 0.84 5.12 -3.83 -0.02 0.82 16 10 C 0.02 0.29 2.42 -93.41 -0.23 0.07 16 11 H 0.12 1.99 8.14 -51.92 -0.42 1.57 16 12 C 0.24 4.65 12.97 -20.80 -0.27 4.38 16 13 N -0.47 -10.05 18.53 42.11 0.78 -9.27 16 14 C 0.00 -0.07 3.49 -27.88 -0.10 -0.17 16 15 C -0.53 -14.13 9.15 -34.44 -0.32 -14.44 16 16 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 17 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -26.99 13.96 55.43 0.77 -26.21 16 19 Si 0.88 20.43 27.47 -169.99 -4.67 15.76 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.26 -5.60 6.54 56.52 0.37 -5.23 16 23 S 0.14 1.44 23.18 -107.50 -2.49 -1.05 16 24 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.07 0.72 7.30 -51.93 -0.38 0.34 16 30 H 0.05 0.51 7.43 -51.93 -0.39 0.12 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.34 4.61 7.75 -39.29 -0.30 4.30 16 33 H 0.04 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 35 H 0.02 0.41 7.57 -51.93 -0.39 0.01 16 36 H 0.04 0.78 7.19 -51.93 -0.37 0.40 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -32.10 332.32 -7.86 -39.96 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -5.22 Total: -0.05 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: -1.21 Total: -8.82 kcal Atomic # 7 Polarization: -51.53 SS G_CDS: 0.72 Total: -50.81 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.67 Total: 15.76 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.49 Total: -1.05 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -32.10 -7.86 -39.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584227204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.215 kcal (2) G-P(sol) polarization free energy of solvation -32.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds