Wall clock time and date at job start Tue Mar 31 2020 00:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.29032 * 124.91559 * 2 1 4 4 C 1.31778 * 117.12868 * 180.02562 * 3 2 1 5 5 C 1.50699 * 122.75123 * 180.02562 * 4 3 2 6 6 C 1.33642 * 114.49896 * 359.97438 * 4 3 2 7 7 C 1.50695 * 126.03945 * 180.02562 * 6 4 3 8 8 N 1.46901 * 109.47379 * 90.00084 * 7 6 4 9 9 C 1.46895 * 111.00119 * 180.02562 * 8 7 6 10 10 C 1.52994 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09009 * 109.47154 * 54.99975 * 10 9 8 12 12 C 1.47200 * 109.47451 * 295.00037 * 10 9 8 13 13 N 7.42077 * 146.67325 * 80.99785 * 2 1 3 14 14 C 1.52996 * 109.47347 * 174.99819 * 10 9 8 15 15 C 1.50702 * 109.47159 * 185.00014 * 14 10 9 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 10 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 10 18 18 N 1.31514 * 119.99985 * 180.27663 * 17 15 14 19 19 Si 1.86800 * 119.99777 * 0.28166 * 17 15 14 20 20 H 1.48498 * 109.47109 * 89.99834 * 19 17 15 21 21 H 1.48507 * 109.46754 * 209.99574 * 19 17 15 22 22 H 1.48498 * 109.47278 * 329.99405 * 19 17 15 23 23 S 1.70973 * 124.92087 * 180.31844 * 2 1 3 24 24 H 1.09003 * 109.47108 * 89.97614 * 1 2 3 25 25 H 1.09000 * 109.46852 * 209.97147 * 1 2 3 26 26 H 1.08996 * 109.47138 * 329.97079 * 1 2 3 27 27 H 1.09001 * 109.46786 * 269.99209 * 5 4 3 28 28 H 1.08990 * 109.47354 * 29.99167 * 5 4 3 29 29 H 1.08996 * 109.47125 * 150.00052 * 5 4 3 30 30 H 1.09002 * 109.47190 * 329.99887 * 7 6 4 31 31 H 1.08996 * 109.47247 * 210.00078 * 7 6 4 32 32 H 1.00905 * 110.99468 * 303.95787 * 8 7 6 33 33 H 1.08998 * 109.47324 * 59.99878 * 9 8 7 34 34 H 1.09002 * 109.47421 * 300.00055 * 9 8 7 35 35 H 1.09004 * 109.47066 * 65.00217 * 14 10 9 36 36 H 1.08994 * 109.47405 * 305.00047 * 14 10 9 37 37 H 0.96996 * 119.99730 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2456 1.0581 0.0000 4 6 3.5512 0.8795 -0.0005 5 6 4.5307 2.0248 0.0000 6 6 3.9355 -0.4005 -0.0004 7 6 5.3575 -0.8992 -0.0004 8 7 5.8196 -1.0612 1.3846 9 6 7.2055 -1.5467 1.4238 10 6 7.6505 -1.7020 2.8793 11 1 6.9487 -2.3480 3.4069 12 6 7.6825 -0.3803 3.5264 13 7 7.7075 0.6379 4.0268 14 6 9.0475 -2.3246 2.9218 15 6 9.4354 -2.5908 4.3535 16 1 8.7536 -2.3413 5.1531 17 6 10.6582 -3.1586 4.6423 18 7 10.9945 -3.3960 5.8914 19 14 11.8373 -3.5907 3.2593 20 1 12.7209 -2.4300 2.9814 21 1 12.6640 -4.7574 3.6601 22 1 11.0643 -3.9282 2.0371 23 16 2.4857 -1.4019 -0.0078 24 1 -0.3633 0.0004 -1.0277 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 4.7666 2.3015 -1.0276 28 1 4.0906 2.8790 0.5144 29 1 5.4433 1.7221 0.5133 30 1 5.9949 -0.1797 -0.5143 31 1 5.4058 -1.8593 -0.5142 32 1 5.7238 -0.1995 1.9008 33 1 7.8555 -0.8313 0.9199 34 1 7.2671 -2.5112 0.9197 35 1 9.7651 -1.6379 2.4727 36 1 9.0446 -3.2620 2.3659 37 1 11.8549 -3.7951 6.0945 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584227204.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:28 Heat of formation + Delta-G solvation = 31.234484 kcal Electronic energy + Delta-G solvation = -18430.109234 eV Core-core repulsion = 15525.746370 eV Total energy + Delta-G solvation = -2904.362864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.94578 -38.97162 -36.86532 -35.53336 -34.30278 -33.16528 -30.43365 -29.97777 -28.16908 -25.16461 -23.78295 -23.58001 -23.21324 -19.84917 -18.97071 -18.84202 -18.28993 -16.90862 -16.55874 -16.21562 -15.95888 -15.49473 -14.94107 -14.81134 -14.55413 -14.34295 -14.19647 -14.11136 -13.91833 -13.62272 -13.47381 -13.26772 -13.17113 -12.91053 -12.87848 -12.58212 -12.51386 -12.07586 -11.88799 -11.70412 -11.60388 -11.31673 -10.72986 -10.56986 -10.21640 -9.60832 -9.37239 -8.23980 -6.29897 -0.27686 0.43604 0.82787 1.44579 1.45815 1.57031 1.75380 1.93601 1.95143 2.42061 3.12100 3.14281 3.23009 3.24173 3.86650 4.01859 4.09357 4.13987 4.40828 4.51297 4.55207 4.56417 4.64006 4.66207 4.68597 4.81261 4.88520 4.93827 4.96906 5.09561 5.26664 5.33782 5.46550 5.64007 5.93901 6.19964 6.26861 6.73907 6.79934 6.80585 7.34597 8.93151 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.031064 B = 0.003283 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.136227 B = 8526.608771 C = 8714.526814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.031 3.969 3 N -0.506 5.506 4 C 0.051 3.949 5 C -0.077 4.077 6 C -0.233 4.233 7 C 0.138 3.862 8 N -0.693 5.693 9 C 0.076 3.924 10 C 0.023 3.977 11 H 0.117 0.883 12 C 0.247 3.753 13 N -0.506 5.506 14 C -0.001 4.001 15 C -0.532 4.532 16 H 0.026 0.974 17 C 0.001 3.999 18 N -0.956 5.956 19 Si 0.950 3.050 20 H -0.277 1.277 21 H -0.291 1.291 22 H -0.219 1.219 23 S 0.163 5.837 24 H 0.101 0.899 25 H 0.099 0.901 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.334 0.666 33 H 0.049 0.951 34 H 0.121 0.879 35 H 0.027 0.973 36 H 0.068 0.932 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.229 2.436 -20.381 27.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.246 4.246 3 N -0.223 5.223 4 C -0.082 4.082 5 C -0.136 4.136 6 C -0.355 4.355 7 C 0.008 3.992 8 N -0.324 5.324 9 C -0.054 4.054 10 C 0.001 3.999 11 H 0.135 0.865 12 C -0.069 4.069 13 N -0.184 5.184 14 C -0.041 4.041 15 C -0.570 4.570 16 H 0.045 0.955 17 C -0.196 4.196 18 N -0.597 5.597 19 Si 0.772 3.228 20 H -0.203 1.203 21 H -0.217 1.217 22 H -0.141 1.141 23 S 0.420 5.580 24 H 0.120 0.880 25 H 0.118 0.882 26 H 0.105 0.895 27 H 0.107 0.893 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.122 0.878 32 H 0.151 0.849 33 H 0.068 0.932 34 H 0.139 0.861 35 H 0.046 0.954 36 H 0.086 0.914 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -18.853 2.684 -19.476 27.239 hybrid contribution 1.842 1.131 0.233 2.174 sum -17.011 3.815 -19.243 25.966 Atomic orbital electron populations 1.20602 0.83016 1.05076 1.05057 1.27592 1.03219 0.91395 1.02424 1.66176 1.04967 1.33089 1.18058 1.20445 0.90516 0.94876 1.02363 1.20364 0.95451 0.94285 1.03542 1.25731 1.00846 0.95534 1.13347 1.20287 0.87104 1.01910 0.89884 1.60599 1.22277 1.36256 1.13271 1.22053 0.87336 1.03138 0.92881 1.19133 1.00726 0.84672 0.95388 0.86491 1.29722 0.90513 0.94597 0.92081 1.81008 1.11497 1.15198 1.10667 1.19587 0.91182 0.97794 0.95489 1.21427 1.02127 1.40479 0.92964 0.95548 1.26084 1.00237 0.95062 0.98200 1.70097 1.23093 1.45550 1.20961 0.85677 0.78744 0.77656 0.80686 1.20269 1.21740 1.14109 1.83804 0.96224 1.10924 1.67096 0.88030 0.88239 0.89470 0.89341 0.91152 0.91011 0.91700 0.87841 0.84876 0.93232 0.86128 0.95426 0.91395 0.92690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.46 71.24 0.75 -0.15 16 2 C 0.03 0.60 7.39 88.52 0.65 1.26 16 3 N -0.51 -12.41 10.53 -179.40 -1.89 -14.29 16 4 C 0.05 1.17 6.74 41.52 0.28 1.45 16 5 C -0.08 -1.52 9.82 71.24 0.70 -0.82 16 6 C -0.23 -4.85 6.10 24.64 0.15 -4.70 16 7 C 0.14 2.49 5.61 85.56 0.48 2.97 16 8 N -0.69 -15.45 6.49 -517.96 -3.36 -18.81 16 9 C 0.08 1.70 5.12 86.30 0.44 2.14 16 10 C 0.02 0.74 2.42 -12.60 -0.03 0.71 16 11 H 0.12 3.83 8.14 -2.38 -0.02 3.81 16 12 C 0.25 9.62 12.97 89.46 1.16 10.78 16 13 N -0.51 -22.04 18.53 19.99 0.37 -21.67 16 14 C 0.00 -0.06 3.49 29.85 0.10 0.05 16 15 C -0.53 -28.52 9.15 25.60 0.23 -28.29 16 16 H 0.03 1.61 7.84 -2.91 -0.02 1.59 16 17 C 0.00 0.03 5.47 84.66 0.46 0.50 16 18 N -0.96 -59.30 13.96 21.45 0.30 -59.00 16 19 Si 0.95 40.87 27.47 68.60 1.88 42.76 16 20 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 21 H -0.29 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.22 -7.85 6.54 99.48 0.65 -7.20 16 23 S 0.16 2.96 23.18 -56.49 -1.31 1.65 16 24 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.37 7.30 -2.39 -0.02 1.36 16 30 H 0.07 1.03 7.43 -2.39 -0.02 1.02 16 31 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.33 8.49 7.75 -89.69 -0.69 7.80 16 33 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.12 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.03 1.05 7.57 -2.38 -0.02 1.04 16 36 H 0.07 2.34 7.19 -2.39 -0.02 2.32 16 37 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -71.90 332.32 1.71 -70.19 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.33 Total: 13.29 kcal Atomic # 6 Polarization: -19.49 SS G_CDS: 5.38 Total: -14.11 kcal Atomic # 7 Polarization: -109.20 SS G_CDS: -4.58 Total: -113.78 kcal Atomic # 14 Polarization: 40.87 SS G_CDS: 1.88 Total: 42.76 kcal Atomic # 16 Polarization: 2.96 SS G_CDS: -1.31 Total: 1.65 kcal Total: -71.90 1.71 -70.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584227204.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.429 kcal (2) G-P(sol) polarization free energy of solvation -71.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds