Wall clock time and date at job start Tue Mar 31 2020 01:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47167 * 2 1 4 4 C 1.52999 * 109.47366 * 239.99865 * 2 1 3 5 5 C 1.50701 * 109.47217 * 177.41635 * 4 2 1 6 6 H 1.07998 * 119.99835 * 4.90810 * 5 4 2 7 7 C 1.37877 * 119.99718 * 184.90740 * 5 4 2 8 8 N 1.31509 * 120.00145 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99569 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46755 * 90.00214 * 9 7 5 11 11 H 1.48499 * 109.47076 * 210.00038 * 9 7 5 12 12 H 1.48492 * 109.47251 * 330.00517 * 9 7 5 13 13 N 1.46905 * 109.46917 * 119.99628 * 2 1 3 14 14 C 1.47480 * 110.99513 * 60.56245 * 13 2 1 15 15 C 1.53513 * 87.93083 * 221.29317 * 14 13 2 16 16 C 1.47479 * 111.00187 * 324.59234 * 13 2 1 17 17 H 1.09007 * 113.47648 * 23.93536 * 16 13 2 18 18 C 1.50695 * 113.47410 * 253.47048 * 16 13 2 19 19 C 1.38241 * 119.98614 * 319.72046 * 18 16 13 20 20 C 1.38220 * 120.01175 * 179.73155 * 19 18 16 21 21 C 1.38350 * 119.98586 * 0.54466 * 20 19 18 22 22 Cl 1.73600 * 120.01201 * 179.70748 * 21 20 19 23 23 C 1.38353 * 119.97429 * 359.72995 * 21 20 19 24 24 C 1.38217 * 119.98508 * 0.02562 * 23 21 20 25 25 H 1.09007 * 109.46834 * 70.30623 * 1 2 3 26 26 H 1.08997 * 109.47257 * 190.30823 * 1 2 3 27 27 H 1.08999 * 109.47255 * 310.30870 * 1 2 3 28 28 H 1.08999 * 109.47008 * 297.41585 * 4 2 1 29 29 H 1.09003 * 109.47138 * 57.41559 * 4 2 1 30 30 H 0.97001 * 120.00112 * 179.97438 * 8 7 5 31 31 H 1.08998 * 113.48056 * 336.06171 * 14 13 2 32 32 H 1.09001 * 113.47570 * 106.53334 * 14 13 2 33 33 H 1.08998 * 114.17103 * 139.67196 * 15 14 13 34 34 H 1.09000 * 114.17210 * 272.18775 * 15 14 13 35 35 H 1.08000 * 119.99434 * 0.02562 * 19 18 16 36 36 H 1.07997 * 120.00594 * 180.27868 * 20 19 18 37 37 H 1.08000 * 120.00550 * 180.02562 * 23 21 20 38 38 H 1.08002 * 119.98994 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5457 -0.6660 -1.2816 6 1 4.0883 -0.2368 -0.4523 7 6 4.2305 -1.1634 -2.3700 8 7 3.5697 -1.6856 -3.3801 9 14 6.0968 -1.0943 -2.4105 10 1 6.6511 -2.3337 -1.8088 11 1 6.5574 -0.9781 -3.8174 12 1 6.5654 0.0837 -1.6373 13 7 2.0196 -0.6924 1.1995 14 6 1.5577 -2.0928 1.2268 15 6 1.2939 -1.9181 2.7290 16 6 1.1378 -0.4377 2.3539 17 1 0.1205 -0.1662 2.0716 18 6 1.7334 0.5046 3.3678 19 6 3.0737 0.4121 3.6933 20 6 3.6218 1.2798 4.6192 21 6 2.8263 2.2337 5.2285 22 17 3.5123 3.3188 6.3970 23 6 1.4836 2.3221 4.9065 24 6 0.9378 1.4571 3.9768 25 1 -0.3633 0.3463 -0.9676 26 1 -0.3633 -1.0110 0.1839 27 1 -0.3634 0.6648 0.7837 28 1 1.7151 -1.7614 -1.2263 29 1 1.6394 -0.2349 -2.1386 30 1 4.0515 -2.0352 -4.1460 31 1 0.6526 -2.2630 0.6439 32 1 2.3445 -2.8139 1.0052 33 1 0.3752 -2.3892 3.0785 34 1 2.1552 -2.1329 3.3614 35 1 3.6938 -0.3352 3.2206 36 1 4.6700 1.2103 4.8701 37 1 0.8622 3.0668 5.3815 38 1 -0.1102 1.5264 3.7251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591015744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:04 Heat of formation + Delta-G solvation = 54.152671 kcal Electronic energy + Delta-G solvation = -19508.461855 eV Core-core repulsion = 16570.756341 eV Total energy + Delta-G solvation = -2937.705514 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63810 -38.67556 -36.43459 -33.93904 -31.99896 -31.07483 -30.72630 -27.61840 -26.81818 -25.27583 -23.07521 -22.79107 -21.73390 -20.23786 -18.29132 -17.18143 -16.31793 -16.08205 -15.40326 -15.05883 -14.64788 -14.30495 -13.98697 -13.47804 -13.40917 -13.18358 -12.79494 -12.29281 -12.18932 -11.80971 -11.67269 -11.51617 -11.30356 -11.11819 -10.84789 -10.80016 -10.71560 -10.66835 -10.44567 -10.26896 -9.82692 -9.16332 -9.11816 -8.96500 -8.48161 -8.29900 -8.05885 -5.93523 -3.92332 1.18899 1.37341 2.12185 3.36574 3.42813 3.47584 3.65666 4.51574 4.55235 4.78681 4.86225 4.93278 5.02750 5.24423 5.41954 5.42865 5.48681 5.60380 5.62192 5.74273 5.76354 5.82637 5.92282 6.01147 6.06385 6.19806 6.22028 6.28702 6.38920 6.52459 6.60471 6.70968 6.81905 6.89484 7.18925 7.49846 7.72510 7.89074 8.07265 8.51847 9.15192 9.70609 11.18344 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.004652 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.302553 B = 6017.195419 C = 6959.659747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.049 3.951 3 H 0.073 0.927 4 C 0.029 3.971 5 C -0.497 4.497 6 H 0.063 0.937 7 C 0.052 3.948 8 N -0.903 5.903 9 Si 0.889 3.111 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.274 1.274 13 N -0.432 5.432 14 C 0.006 3.994 15 C -0.140 4.140 16 C 0.037 3.963 17 H 0.095 0.905 18 C -0.050 4.050 19 C -0.075 4.075 20 C -0.114 4.114 21 C -0.041 4.041 22 Cl -0.084 7.084 23 C -0.116 4.116 24 C -0.107 4.107 25 H 0.060 0.940 26 H 0.055 0.945 27 H 0.047 0.953 28 H 0.015 0.985 29 H 0.022 0.978 30 H 0.258 0.742 31 H 0.070 0.930 32 H 0.086 0.914 33 H 0.068 0.932 34 H 0.089 0.911 35 H 0.141 0.859 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.277 4.235 16.789 18.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.059 4.059 3 H 0.092 0.908 4 C -0.008 4.008 5 C -0.536 4.536 6 H 0.081 0.919 7 C -0.147 4.147 8 N -0.543 5.543 9 Si 0.718 3.282 10 H -0.209 1.209 11 H -0.215 1.215 12 H -0.199 1.199 13 N -0.153 5.153 14 C -0.122 4.122 15 C -0.178 4.178 16 C -0.072 4.072 17 H 0.113 0.887 18 C -0.050 4.050 19 C -0.093 4.093 20 C -0.133 4.133 21 C -0.067 4.067 22 Cl -0.056 7.056 23 C -0.135 4.135 24 C -0.126 4.126 25 H 0.079 0.921 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.033 0.967 29 H 0.041 0.959 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.107 0.893 35 H 0.159 0.841 36 H 0.148 0.852 37 H 0.146 0.854 38 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -5.458 4.438 16.692 18.114 hybrid contribution 0.240 0.101 -0.293 0.392 sum -5.218 4.539 16.400 17.798 Atomic orbital electron populations 1.22577 0.99331 1.00966 1.01446 1.22317 0.90571 0.99710 0.93350 0.90841 1.19200 0.96548 0.94997 0.90043 1.21201 0.91456 1.38096 1.02800 0.91921 1.25007 0.98094 0.95826 0.95794 1.69959 1.35211 1.41472 1.07691 0.86630 0.86326 0.78367 0.76880 1.20861 1.21546 1.19942 1.69198 1.41014 1.02989 1.02136 1.23590 1.00548 0.94082 0.94014 1.23276 1.01916 0.94654 0.97947 1.22737 0.97634 0.93753 0.93084 0.88712 1.19827 0.93852 0.95449 0.95921 1.21104 0.94949 0.98373 0.94905 1.21091 0.99955 0.95013 0.97251 1.20893 0.94071 0.95514 0.96233 1.98349 1.85216 1.63915 1.58078 1.20917 0.93201 1.00279 0.99092 1.20986 0.99970 0.95022 0.96601 0.92111 0.92625 0.93451 0.96682 0.95944 0.93255 0.91189 0.89535 0.91313 0.89266 0.84112 0.85226 0.85431 0.85573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.97 7.76 37.16 0.29 -2.68 16 2 C 0.05 0.97 2.80 -67.71 -0.19 0.78 16 3 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 4 C 0.03 0.72 4.26 -27.88 -0.12 0.61 16 5 C -0.50 -13.76 8.80 -34.44 -0.30 -14.07 16 6 H 0.06 1.75 7.68 -52.49 -0.40 1.35 16 7 C 0.05 1.50 5.46 -17.82 -0.10 1.40 16 8 N -0.90 -26.96 13.29 55.43 0.74 -26.22 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 13 N -0.43 -7.76 5.42 -229.92 -1.25 -9.01 16 14 C 0.01 0.10 6.20 -7.55 -0.05 0.06 16 15 C -0.14 -1.83 7.90 -26.20 -0.21 -2.04 16 16 C 0.04 0.53 3.01 -72.59 -0.22 0.31 16 17 H 0.10 1.27 4.84 -51.93 -0.25 1.01 16 18 C -0.05 -0.68 5.39 -104.62 -0.56 -1.25 16 19 C -0.07 -1.05 8.87 -39.59 -0.35 -1.40 16 20 C -0.11 -1.48 9.83 -39.55 -0.39 -1.87 16 21 C -0.04 -0.50 6.32 -39.50 -0.25 -0.75 16 22 Cl -0.08 -0.96 28.96 -51.86 -1.50 -2.46 16 23 C -0.12 -1.35 9.83 -39.55 -0.39 -1.74 16 24 C -0.11 -1.29 9.71 -39.59 -0.38 -1.67 16 25 H 0.06 0.99 8.11 -51.93 -0.42 0.57 16 26 H 0.05 0.85 5.76 -51.93 -0.30 0.55 16 27 H 0.05 0.66 6.50 -51.93 -0.34 0.32 16 28 H 0.01 0.39 6.91 -51.93 -0.36 0.03 16 29 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 31 H 0.07 1.13 5.55 -51.93 -0.29 0.85 16 32 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 33 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.14 7.64 -51.93 -0.40 0.74 16 35 H 0.14 2.08 7.82 -52.49 -0.41 1.67 16 36 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 37 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 38 H 0.13 1.25 8.05 -52.49 -0.42 0.83 16 LS Contribution 320.51 15.07 4.83 4.83 Total: -1.00 -29.50 320.51 -10.68 -40.18 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -5.26 Total: 0.07 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: -3.22 Total: -24.31 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: -0.51 Total: -35.23 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Atomic # 17 Polarization: -0.96 SS G_CDS: -1.50 Total: -2.46 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.50 -10.68 -40.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.329 kcal (2) G-P(sol) polarization free energy of solvation -29.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds