Wall clock time and date at job start Tue Mar 31 2020 01:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47167 * 2 1 4 4 C 1.52999 * 109.47366 * 239.99865 * 2 1 3 5 5 C 1.50701 * 109.47217 * 177.41635 * 4 2 1 6 6 H 1.07998 * 119.99835 * 4.90810 * 5 4 2 7 7 C 1.37877 * 119.99718 * 184.90740 * 5 4 2 8 8 N 1.31509 * 120.00145 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 119.99569 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46755 * 90.00214 * 9 7 5 11 11 H 1.48499 * 109.47076 * 210.00038 * 9 7 5 12 12 H 1.48492 * 109.47251 * 330.00517 * 9 7 5 13 13 N 1.46905 * 109.46917 * 119.99628 * 2 1 3 14 14 C 1.47480 * 110.99513 * 60.56245 * 13 2 1 15 15 C 1.53513 * 87.93083 * 221.29317 * 14 13 2 16 16 C 1.47479 * 111.00187 * 324.59234 * 13 2 1 17 17 H 1.09007 * 113.47648 * 23.93536 * 16 13 2 18 18 C 1.50695 * 113.47410 * 253.47048 * 16 13 2 19 19 C 1.38241 * 119.98614 * 319.72046 * 18 16 13 20 20 C 1.38220 * 120.01175 * 179.73155 * 19 18 16 21 21 C 1.38350 * 119.98586 * 0.54466 * 20 19 18 22 22 Cl 1.73600 * 120.01201 * 179.70748 * 21 20 19 23 23 C 1.38353 * 119.97429 * 359.72995 * 21 20 19 24 24 C 1.38217 * 119.98508 * 0.02562 * 23 21 20 25 25 H 1.09007 * 109.46834 * 70.30623 * 1 2 3 26 26 H 1.08997 * 109.47257 * 190.30823 * 1 2 3 27 27 H 1.08999 * 109.47255 * 310.30870 * 1 2 3 28 28 H 1.08999 * 109.47008 * 297.41585 * 4 2 1 29 29 H 1.09003 * 109.47138 * 57.41559 * 4 2 1 30 30 H 0.97001 * 120.00112 * 179.97438 * 8 7 5 31 31 H 1.08998 * 113.48056 * 336.06171 * 14 13 2 32 32 H 1.09001 * 113.47570 * 106.53334 * 14 13 2 33 33 H 1.08998 * 114.17103 * 139.67196 * 15 14 13 34 34 H 1.09000 * 114.17210 * 272.18775 * 15 14 13 35 35 H 1.08000 * 119.99434 * 0.02562 * 19 18 16 36 36 H 1.07997 * 120.00594 * 180.27868 * 20 19 18 37 37 H 1.08000 * 120.00550 * 180.02562 * 23 21 20 38 38 H 1.08002 * 119.98994 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5457 -0.6660 -1.2816 6 1 4.0883 -0.2368 -0.4523 7 6 4.2305 -1.1634 -2.3700 8 7 3.5697 -1.6856 -3.3801 9 14 6.0968 -1.0943 -2.4105 10 1 6.6511 -2.3337 -1.8088 11 1 6.5574 -0.9781 -3.8174 12 1 6.5654 0.0837 -1.6373 13 7 2.0196 -0.6924 1.1995 14 6 1.5577 -2.0928 1.2268 15 6 1.2939 -1.9181 2.7290 16 6 1.1378 -0.4377 2.3539 17 1 0.1205 -0.1662 2.0716 18 6 1.7334 0.5046 3.3678 19 6 3.0737 0.4121 3.6933 20 6 3.6218 1.2798 4.6192 21 6 2.8263 2.2337 5.2285 22 17 3.5123 3.3188 6.3970 23 6 1.4836 2.3221 4.9065 24 6 0.9378 1.4571 3.9768 25 1 -0.3633 0.3463 -0.9676 26 1 -0.3633 -1.0110 0.1839 27 1 -0.3634 0.6648 0.7837 28 1 1.7151 -1.7614 -1.2263 29 1 1.6394 -0.2349 -2.1386 30 1 4.0515 -2.0352 -4.1460 31 1 0.6526 -2.2630 0.6439 32 1 2.3445 -2.8139 1.0052 33 1 0.3752 -2.3892 3.0785 34 1 2.1552 -2.1329 3.3614 35 1 3.6938 -0.3352 3.2206 36 1 4.6700 1.2103 4.8701 37 1 0.8622 3.0668 5.3815 38 1 -0.1102 1.5264 3.7251 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591015744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:28:04 Heat of formation + Delta-G solvation = 37.803052 kcal Electronic energy + Delta-G solvation = -19509.170828 eV Core-core repulsion = 16570.756341 eV Total energy + Delta-G solvation = -2938.414487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.86501 -39.70963 -37.36857 -35.71766 -33.85874 -32.05060 -31.75989 -29.48074 -28.11476 -26.50774 -24.97438 -23.77503 -22.82736 -21.66326 -19.57510 -18.42062 -18.17330 -17.40517 -16.60166 -16.51367 -16.10180 -15.59930 -15.25785 -14.71586 -14.37212 -14.29132 -14.20678 -13.97704 -13.47379 -13.29626 -13.20624 -12.89873 -12.68168 -12.45706 -12.40383 -12.23542 -12.16687 -11.94098 -11.71237 -11.59132 -11.36337 -11.17959 -10.90669 -10.51079 -9.91779 -9.53312 -9.34574 -8.13954 -6.19212 0.20707 0.42063 1.19091 1.39208 1.39358 1.50726 2.44108 2.66172 3.18980 3.34869 3.64503 3.88960 3.94170 4.03428 4.11903 4.21964 4.34714 4.41275 4.45963 4.50780 4.59354 4.70199 4.79830 4.90867 4.95257 5.02737 5.08442 5.11228 5.18949 5.30106 5.33265 5.40061 5.46411 5.61418 5.75308 5.80216 5.88370 5.93344 6.29901 6.50739 6.95696 7.47608 8.97945 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.018162 B = 0.004652 C = 0.004022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.302553 B = 6017.195419 C = 6959.659747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.058 3.942 3 H 0.055 0.945 4 C 0.037 3.963 5 C -0.506 4.506 6 H 0.056 0.944 7 C -0.001 4.001 8 N -0.938 5.938 9 Si 0.953 3.047 10 H -0.276 1.276 11 H -0.285 1.285 12 H -0.270 1.270 13 N -0.460 5.460 14 C -0.001 4.001 15 C -0.119 4.119 16 C 0.045 3.955 17 H 0.112 0.888 18 C -0.064 4.064 19 C -0.090 4.090 20 C -0.122 4.122 21 C -0.047 4.047 22 Cl -0.076 7.076 23 C -0.114 4.114 24 C -0.103 4.103 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.078 0.922 28 H -0.002 1.002 29 H -0.008 1.008 30 H 0.259 0.741 31 H 0.072 0.928 32 H 0.059 0.941 33 H 0.100 0.900 34 H 0.089 0.911 35 H 0.124 0.876 36 H 0.136 0.864 37 H 0.151 0.849 38 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.170 5.034 18.787 20.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.051 4.051 3 H 0.073 0.927 4 C -0.001 4.001 5 C -0.544 4.544 6 H 0.074 0.926 7 C -0.197 4.197 8 N -0.580 5.580 9 Si 0.779 3.221 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.194 1.194 13 N -0.182 5.182 14 C -0.130 4.130 15 C -0.157 4.157 16 C -0.063 4.063 17 H 0.130 0.870 18 C -0.065 4.065 19 C -0.109 4.109 20 C -0.141 4.141 21 C -0.074 4.074 22 Cl -0.047 7.047 23 C -0.132 4.132 24 C -0.121 4.121 25 H 0.073 0.927 26 H 0.084 0.916 27 H 0.097 0.903 28 H 0.016 0.984 29 H 0.010 0.990 30 H 0.068 0.932 31 H 0.090 0.910 32 H 0.078 0.922 33 H 0.118 0.882 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.154 0.846 37 H 0.169 0.831 38 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -6.350 5.241 18.707 20.439 hybrid contribution 0.531 -0.121 -0.873 1.029 sum -5.819 5.121 17.833 19.445 Atomic orbital electron populations 1.22460 0.96163 1.02418 1.02350 1.21989 0.93088 0.97888 0.92111 0.92718 1.19033 0.95157 0.94227 0.91641 1.21504 0.93131 1.37389 1.02400 0.92612 1.25812 1.02738 0.95624 0.95554 1.70077 1.36983 1.42559 1.08332 0.85621 0.80851 0.78589 0.77006 1.20129 1.21055 1.19422 1.69144 1.42870 1.03684 1.02461 1.23603 0.99664 0.92758 0.96930 1.23193 1.03340 0.93950 0.95199 1.22769 0.97522 0.94675 0.91373 0.87046 1.19873 0.93922 0.96319 0.96405 1.21044 0.95374 0.98769 0.95715 1.21180 1.00534 0.95144 0.97241 1.21045 0.94591 0.95450 0.96313 1.98352 1.85209 1.63508 1.57673 1.21225 0.93020 1.00379 0.98626 1.21252 1.01046 0.93923 0.95882 0.92702 0.91575 0.90329 0.98401 0.98979 0.93180 0.90965 0.92237 0.88203 0.89228 0.85794 0.84581 0.83084 0.82912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.37 7.76 71.98 0.56 -4.81 16 2 C 0.06 2.32 2.80 44.91 0.13 2.44 16 3 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 4 C 0.04 1.88 4.26 29.85 0.13 2.01 16 5 C -0.51 -28.84 8.80 25.60 0.23 -28.61 16 6 H 0.06 3.19 7.68 -2.91 -0.02 3.17 16 7 C 0.00 -0.05 5.46 84.66 0.46 0.41 16 8 N -0.94 -57.40 13.29 21.45 0.28 -57.11 16 9 Si 0.95 45.76 29.54 68.60 2.03 47.79 16 10 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 13 N -0.46 -16.46 5.42 -881.34 -4.78 -21.23 16 14 C 0.00 -0.02 6.20 83.57 0.52 0.49 16 15 C -0.12 -2.88 7.90 30.94 0.24 -2.63 16 16 C 0.05 1.19 3.01 41.44 0.12 1.31 16 17 H 0.11 2.55 4.84 -2.38 -0.01 2.54 16 18 C -0.06 -1.64 5.39 -19.87 -0.11 -1.75 16 19 C -0.09 -2.48 8.87 22.27 0.20 -2.28 16 20 C -0.12 -3.04 9.83 22.29 0.22 -2.82 16 21 C -0.05 -1.08 6.32 22.32 0.14 -0.94 16 22 Cl -0.08 -1.59 28.96 -2.72 -0.08 -1.66 16 23 C -0.11 -2.30 9.83 22.29 0.22 -2.08 16 24 C -0.10 -2.12 9.71 22.27 0.22 -1.90 16 25 H 0.05 1.73 8.11 -2.38 -0.02 1.71 16 26 H 0.07 1.88 5.76 -2.39 -0.01 1.87 16 27 H 0.08 1.92 6.50 -2.39 -0.02 1.90 16 28 H 0.00 -0.12 6.91 -2.39 -0.02 -0.14 16 29 H -0.01 -0.46 8.14 -2.39 -0.02 -0.48 16 30 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 31 H 0.07 2.30 5.55 -2.39 -0.01 2.29 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.10 1.83 8.14 -2.39 -0.02 1.82 16 34 H 0.09 2.17 7.64 -2.39 -0.02 2.15 16 35 H 0.12 3.74 7.82 -2.91 -0.02 3.72 16 36 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.28 16 38 H 0.15 2.31 8.05 -2.91 -0.02 2.29 16 Total: -1.00 -64.91 320.51 1.78 -63.13 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 1.05 Total: 10.24 kcal Atomic # 6 Polarization: -44.43 SS G_CDS: 3.27 Total: -41.15 kcal Atomic # 7 Polarization: -73.85 SS G_CDS: -4.49 Total: -78.34 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 17 Polarization: -1.59 SS G_CDS: -0.08 Total: -1.66 kcal Total: -64.91 1.78 -63.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591015744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.934 kcal (2) G-P(sol) polarization free energy of solvation -64.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds