Wall clock time and date at job start Tue Mar 31 2020 00:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 N 1.46893 * 109.46968 * 179.97438 * 7 6 5 9 9 C 1.46901 * 111.00159 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47414 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47192 * 305.00149 * 10 9 8 12 12 C 1.47196 * 109.47310 * 65.00115 * 10 9 8 13 13 N 8.70453 * 120.75667 * 193.51441 * 2 1 3 14 14 C 1.53006 * 109.47228 * 185.00018 * 10 9 8 15 15 C 1.50694 * 109.46982 * 175.00098 * 14 10 9 16 16 H 1.08005 * 120.00323 * 359.97438 * 15 14 10 17 17 C 1.37882 * 120.00031 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99828 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00144 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47066 * 119.99666 * 19 17 15 22 22 H 1.48499 * 109.46873 * 239.99321 * 19 17 15 23 23 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 24 24 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 27 27 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 28 28 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 29 29 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 30 30 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 31 31 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 32 32 H 1.00899 * 111.00006 * 56.04861 * 8 7 6 33 33 H 1.08998 * 109.47275 * 300.00238 * 9 8 7 34 34 H 1.09002 * 109.47213 * 60.00297 * 9 8 7 35 35 H 1.08998 * 109.46647 * 295.00265 * 14 10 9 36 36 H 1.09004 * 109.46555 * 54.99782 * 14 10 9 37 37 H 0.96995 * 120.00022 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 7 5.7686 -3.6233 -1.4657 9 6 6.1097 -4.0160 -2.8395 10 6 7.1039 -5.1785 -2.8057 11 1 7.9699 -4.8987 -2.2059 12 6 6.4572 -6.3601 -2.2122 13 7 5.9585 -7.2731 -1.7480 14 6 7.5546 -5.5058 -4.2307 15 6 8.6242 -6.5665 -4.1882 16 1 8.9502 -6.9670 -3.2395 17 6 9.1874 -7.0251 -5.3602 18 7 8.7908 -6.5372 -6.5153 19 14 10.5136 -8.3395 -5.3074 20 1 10.7791 -8.7184 -3.8963 21 1 10.0577 -9.5334 -6.0636 22 1 11.7588 -7.8111 -5.9203 23 7 2.2199 -1.1083 -0.0064 24 1 -0.3633 -0.0052 1.0277 25 1 -0.3633 -0.8874 -0.5184 26 1 -0.3633 0.8926 -0.5093 27 1 1.8392 2.1308 0.0005 28 1 5.3966 -1.8274 0.5002 29 1 4.0439 -2.9843 0.4958 30 1 3.9003 -2.8071 -1.9733 31 1 5.2530 -1.6502 -1.9690 32 1 5.4108 -4.4087 -0.9430 33 1 5.2059 -4.3265 -3.3637 34 1 6.5582 -3.1690 -3.3588 35 1 6.7038 -5.8705 -4.8061 36 1 7.9529 -4.6068 -4.7012 37 1 9.1867 -6.8600 -7.3398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591724869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:31 Heat of formation + Delta-G solvation = 48.078144 kcal Electronic energy + Delta-G solvation = -17930.744928 eV Core-core repulsion = 15027.112460 eV Total energy + Delta-G solvation = -2903.632468 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.13393 -37.61486 -35.70597 -33.95228 -33.06119 -31.63480 -29.79864 -27.87182 -26.55528 -24.26762 -22.53382 -22.09251 -21.51353 -19.95964 -17.86909 -16.74101 -16.60986 -15.87063 -15.75864 -15.11350 -14.76654 -14.45303 -14.27284 -13.64467 -13.28400 -13.25200 -12.93201 -12.76954 -12.66155 -12.44213 -12.23442 -11.99166 -11.61560 -11.56112 -11.34301 -11.19796 -11.02616 -10.73991 -10.52769 -10.27267 -9.87773 -9.66213 -9.55393 -9.22956 -8.93899 -8.46775 -8.41359 -6.10110 -4.13141 0.44017 1.11797 1.50339 2.50925 3.28431 3.36681 3.41285 3.53952 3.59407 3.70734 4.24872 4.41866 4.75820 4.77587 4.86677 4.87029 4.95855 5.04911 5.26268 5.28068 5.35520 5.39780 5.49124 5.57237 5.69070 5.79061 5.80782 5.99878 6.12458 6.33167 6.52824 6.99842 7.35189 7.43195 7.51319 7.52422 7.85243 8.22535 8.39201 8.91751 9.52436 11.00866 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036612 B = 0.002603 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.587440 B =10753.258058 C =10965.201134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.067 3.933 3 C -0.271 4.271 4 S 0.125 5.875 5 C 0.063 3.937 6 C -0.045 4.045 7 C 0.066 3.934 8 N -0.691 5.691 9 C 0.068 3.932 10 C 0.008 3.992 11 H 0.112 0.888 12 C 0.240 3.760 13 N -0.476 5.476 14 C 0.032 3.968 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.282 1.282 23 N -0.474 5.474 24 H 0.075 0.925 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.175 0.825 28 H 0.098 0.902 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.078 0.922 32 H 0.340 0.660 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.024 0.976 36 H 0.040 0.960 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.059 18.442 12.188 25.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.065 4.065 3 C -0.410 4.410 4 S 0.380 5.620 5 C -0.216 4.216 6 C -0.087 4.087 7 C -0.065 4.065 8 N -0.322 5.322 9 C -0.062 4.062 10 C -0.014 4.014 11 H 0.130 0.870 12 C -0.077 4.077 13 N -0.153 5.153 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.208 1.208 23 N -0.188 5.188 24 H 0.093 0.907 25 H 0.095 0.905 26 H 0.093 0.907 27 H 0.192 0.808 28 H 0.116 0.884 29 H 0.112 0.888 30 H 0.055 0.945 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.055 0.945 34 H 0.111 0.889 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.497 17.492 12.780 24.525 hybrid contribution -0.792 -0.810 -0.598 1.281 sum -12.289 16.682 12.182 24.036 Atomic orbital electron populations 1.20366 0.87171 1.03401 1.02925 1.20336 0.98310 0.86551 1.01273 1.26815 0.95378 1.03918 1.14907 1.84075 1.07058 1.03013 1.67822 1.27011 0.93931 0.98409 1.02242 1.20291 0.95614 0.93791 0.98957 1.21875 0.94633 0.95527 0.94455 1.60556 1.45084 1.11125 1.15417 1.22090 0.97885 0.97876 0.88374 1.19332 0.96268 0.84737 1.01104 0.87010 1.29452 0.92294 0.94382 0.91532 1.81172 1.11235 1.11029 1.11885 1.19175 0.96885 0.98069 0.86570 1.21185 1.20674 1.21620 0.92884 0.92416 1.24962 0.96971 0.96637 0.95472 1.69946 1.42709 1.42917 0.97475 0.86531 0.81630 0.81641 0.78259 1.19666 1.21008 1.20820 1.66152 1.04610 1.31629 1.16459 0.90671 0.90506 0.90745 0.80750 0.88385 0.88804 0.94506 0.90383 0.84221 0.94534 0.88898 0.95727 0.94161 0.92844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.31 36.01 0.37 -0.20 16 2 C 0.07 0.68 6.74 -84.22 -0.57 0.11 16 3 C -0.27 -2.30 11.13 29.12 0.32 -1.97 16 4 S 0.12 1.09 23.18 -107.50 -2.49 -1.41 16 5 C 0.06 0.67 6.64 -13.46 -0.09 0.58 16 6 C -0.05 -0.44 6.06 -27.88 -0.17 -0.61 16 7 C 0.07 0.73 5.67 -3.83 -0.02 0.71 16 8 N -0.69 -8.77 6.50 -113.78 -0.74 -9.51 16 9 C 0.07 0.98 5.12 -3.82 -0.02 0.96 16 10 C 0.01 0.14 2.42 -93.41 -0.23 -0.09 16 11 H 0.11 1.93 8.14 -51.93 -0.42 1.50 16 12 C 0.24 4.82 12.99 -20.66 -0.27 4.55 16 13 N -0.48 -10.35 18.56 42.28 0.78 -9.56 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -13.94 8.60 -34.44 -0.30 -14.23 16 16 H 0.06 1.53 7.59 -52.48 -0.40 1.13 16 17 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 19 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 N -0.47 -5.70 10.53 -8.06 -0.08 -5.78 16 24 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.38 8.12 -51.93 -0.42 -0.04 16 27 H 0.18 1.00 8.06 -52.49 -0.42 0.58 16 28 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.34 4.47 7.81 -39.29 -0.31 4.17 16 33 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 35 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.26 7.10 8.31 -40.82 -0.34 6.77 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -30.78 337.91 -8.24 -39.02 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.33 Total: -1.35 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.18 Total: -8.00 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 0.70 Total: -49.63 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 1.09 SS G_CDS: -2.49 Total: -1.41 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.78 -8.24 -39.02 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591724869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.099 kcal (2) G-P(sol) polarization free energy of solvation -30.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds