Wall clock time and date at job start Tue Mar 31 2020 00:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33637 * 122.74769 * 2 1 4 4 S 1.76200 * 107.92285 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28264 * 0.27600 * 4 3 2 6 6 C 1.50704 * 124.91898 * 179.84355 * 5 4 3 7 7 C 1.53002 * 109.46838 * 269.99555 * 6 5 4 8 8 N 1.46893 * 109.46968 * 179.97438 * 7 6 5 9 9 C 1.46901 * 111.00159 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.47414 * 180.02562 * 9 8 7 11 11 H 1.09003 * 109.47192 * 305.00149 * 10 9 8 12 12 C 1.47196 * 109.47310 * 65.00115 * 10 9 8 13 13 N 8.70453 * 120.75667 * 193.51441 * 2 1 3 14 14 C 1.53006 * 109.47228 * 185.00018 * 10 9 8 15 15 C 1.50694 * 109.46982 * 175.00098 * 14 10 9 16 16 H 1.08005 * 120.00323 * 359.97438 * 15 14 10 17 17 C 1.37882 * 120.00031 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99828 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 120.00144 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47099 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47066 * 119.99666 * 19 17 15 22 22 H 1.48499 * 109.46873 * 239.99321 * 19 17 15 23 23 N 1.29023 * 110.16660 * 359.83660 * 5 4 3 24 24 H 1.09002 * 109.47152 * 269.70807 * 1 2 3 25 25 H 1.09001 * 109.46980 * 149.70907 * 1 2 3 26 26 H 1.09004 * 109.47113 * 29.70888 * 1 2 3 27 27 H 1.07996 * 126.04156 * 0.03271 * 3 2 1 28 28 H 1.08998 * 109.47268 * 29.99228 * 6 5 4 29 29 H 1.08998 * 109.47561 * 149.99857 * 6 5 4 30 30 H 1.09000 * 109.47428 * 300.00004 * 7 6 5 31 31 H 1.09004 * 109.47230 * 59.99848 * 7 6 5 32 32 H 1.00899 * 111.00006 * 56.04861 * 8 7 6 33 33 H 1.08998 * 109.47275 * 300.00238 * 9 8 7 34 34 H 1.09002 * 109.47213 * 60.00297 * 9 8 7 35 35 H 1.08998 * 109.46647 * 295.00265 * 14 10 9 36 36 H 1.09004 * 109.46555 * 54.99782 * 14 10 9 37 37 H 0.96995 * 120.00022 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5074 -1.4589 8 7 5.7686 -3.6233 -1.4657 9 6 6.1097 -4.0160 -2.8395 10 6 7.1039 -5.1785 -2.8057 11 1 7.9699 -4.8987 -2.2059 12 6 6.4572 -6.3601 -2.2122 13 7 5.9585 -7.2731 -1.7480 14 6 7.5546 -5.5058 -4.2307 15 6 8.6242 -6.5665 -4.1882 16 1 8.9502 -6.9670 -3.2395 17 6 9.1874 -7.0251 -5.3602 18 7 8.7908 -6.5372 -6.5153 19 14 10.5136 -8.3395 -5.3074 20 1 10.7791 -8.7184 -3.8963 21 1 10.0577 -9.5334 -6.0636 22 1 11.7588 -7.8111 -5.9203 23 7 2.2199 -1.1083 -0.0064 24 1 -0.3633 -0.0052 1.0277 25 1 -0.3633 -0.8874 -0.5184 26 1 -0.3633 0.8926 -0.5093 27 1 1.8392 2.1308 0.0005 28 1 5.3966 -1.8274 0.5002 29 1 4.0439 -2.9843 0.4958 30 1 3.9003 -2.8071 -1.9733 31 1 5.2530 -1.6502 -1.9690 32 1 5.4108 -4.4087 -0.9430 33 1 5.2059 -4.3265 -3.3637 34 1 6.5582 -3.1690 -3.3588 35 1 6.7038 -5.8705 -4.8061 36 1 7.9529 -4.6068 -4.7012 37 1 9.1867 -6.8600 -7.3398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591724869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:31 Heat of formation + Delta-G solvation = 28.625436 kcal Electronic energy + Delta-G solvation = -17931.588460 eV Core-core repulsion = 15027.112460 eV Total energy + Delta-G solvation = -2904.476001 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.85139 -38.96320 -36.99032 -35.59286 -34.40148 -32.98527 -30.82895 -28.55570 -28.12208 -25.43926 -23.78322 -23.59467 -22.54871 -20.66758 -18.65468 -18.45285 -18.23864 -17.01603 -16.71879 -16.42078 -15.86824 -15.53973 -15.33678 -14.80357 -14.52308 -14.37445 -14.19854 -13.88079 -13.70542 -13.59921 -13.43721 -13.24417 -13.07558 -12.85899 -12.60332 -12.45629 -12.30848 -12.20795 -12.18119 -11.90265 -11.39783 -11.14687 -10.60956 -10.55136 -10.35553 -9.62490 -9.47275 -8.19203 -6.27162 -0.26110 0.44367 0.81635 1.39693 1.42734 1.53155 1.78401 1.92726 1.94913 2.41939 2.90127 3.15998 3.24873 3.36349 3.98943 4.04691 4.16287 4.23061 4.28645 4.38964 4.43735 4.61357 4.70566 4.75503 4.79786 4.83954 4.94719 4.97867 5.01805 5.08456 5.36842 5.48489 5.63061 5.80073 5.92039 6.21119 6.27475 6.75502 6.81258 6.88265 7.41486 8.91994 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036612 B = 0.002603 C = 0.002553 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 764.587440 B =10753.258058 C =10965.201134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.041 3.959 3 C -0.265 4.265 4 S 0.154 5.846 5 C 0.040 3.960 6 C -0.039 4.039 7 C 0.071 3.929 8 N -0.686 5.686 9 C 0.078 3.922 10 C 0.020 3.980 11 H 0.128 0.872 12 C 0.250 3.750 13 N -0.506 5.506 14 C 0.037 3.963 15 C -0.537 4.537 16 H 0.055 0.945 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.949 3.051 20 H -0.269 1.269 21 H -0.286 1.286 22 H -0.273 1.273 23 N -0.506 5.506 24 H 0.082 0.918 25 H 0.065 0.935 26 H 0.095 0.905 27 H 0.203 0.797 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.024 0.976 31 H 0.088 0.912 32 H 0.337 0.663 33 H 0.031 0.969 34 H 0.109 0.891 35 H -0.001 1.001 36 H 0.038 0.962 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.755 19.966 13.014 26.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.091 4.091 3 C -0.404 4.404 4 S 0.410 5.590 5 C -0.238 4.238 6 C -0.080 4.080 7 C -0.059 4.059 8 N -0.316 5.316 9 C -0.053 4.053 10 C -0.002 4.002 11 H 0.145 0.855 12 C -0.066 4.066 13 N -0.183 5.183 14 C -0.002 4.002 15 C -0.575 4.575 16 H 0.073 0.927 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.198 1.198 23 N -0.222 5.222 24 H 0.101 0.899 25 H 0.084 0.916 26 H 0.114 0.886 27 H 0.220 0.780 28 H 0.130 0.870 29 H 0.105 0.895 30 H 0.043 0.957 31 H 0.106 0.894 32 H 0.155 0.845 33 H 0.049 0.951 34 H 0.127 0.873 35 H 0.018 0.982 36 H 0.057 0.943 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -11.192 19.024 13.620 25.936 hybrid contribution -0.915 -1.219 -0.841 1.741 sum -12.107 17.804 12.779 25.037 Atomic orbital electron populations 1.20432 0.85699 1.03926 1.03591 1.20768 0.99551 0.86594 1.02170 1.27212 0.95203 1.04848 1.13142 1.83915 1.07037 1.01198 1.66894 1.27082 0.93840 0.99668 1.03181 1.20214 0.96089 0.93669 0.98027 1.21859 0.93653 0.94984 0.95427 1.60540 1.45729 1.11363 1.13992 1.21945 0.96802 0.96895 0.89621 1.19242 0.97678 0.85151 0.98100 0.85475 1.29823 0.91581 0.94257 0.90901 1.81174 1.12428 1.11864 1.12867 1.19002 0.95055 0.96933 0.89186 1.21592 1.21159 1.22136 0.92645 0.92699 1.25725 0.99103 0.98678 0.95388 1.70037 1.44054 1.44330 0.98009 0.85633 0.79532 0.79116 0.78229 1.19338 1.21218 1.19785 1.66163 1.05510 1.33229 1.17278 0.89890 0.91614 0.88593 0.78006 0.87006 0.89498 0.95744 0.89380 0.84522 0.95110 0.87264 0.98231 0.94347 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.31 71.24 0.73 -0.28 16 2 C 0.04 0.77 6.74 41.52 0.28 1.05 16 3 C -0.27 -3.92 11.13 66.78 0.74 -3.18 16 4 S 0.15 2.39 23.18 -56.49 -1.31 1.08 16 5 C 0.04 0.81 6.64 88.52 0.59 1.40 16 6 C -0.04 -0.73 6.06 29.85 0.18 -0.54 16 7 C 0.07 1.48 5.67 86.31 0.49 1.97 16 8 N -0.69 -16.42 6.50 -513.89 -3.34 -19.76 16 9 C 0.08 2.15 5.12 86.30 0.44 2.59 16 10 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 11 H 0.13 4.14 8.14 -2.39 -0.02 4.12 16 12 C 0.25 9.92 12.99 89.40 1.16 11.08 16 13 N -0.51 -21.85 18.56 20.04 0.37 -21.48 16 14 C 0.04 1.69 4.42 29.85 0.13 1.83 16 15 C -0.54 -28.34 8.60 25.60 0.22 -28.12 16 16 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 17 C 0.01 0.54 5.46 84.66 0.46 1.00 16 18 N -0.92 -53.07 13.29 21.45 0.28 -52.79 16 19 Si 0.95 43.44 29.54 68.60 2.03 45.46 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 N -0.51 -11.93 10.53 -179.40 -1.89 -13.82 16 24 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.10 0.79 8.12 -2.38 -0.02 0.77 16 27 H 0.20 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.02 0.57 8.14 -2.39 -0.02 0.56 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.34 8.53 7.81 -89.69 -0.70 7.83 16 33 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 35 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 36 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.26 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -65.20 337.91 1.92 -63.28 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: 0.37 Total: 8.55 kcal Atomic # 6 Polarization: -15.93 SS G_CDS: 5.40 Total: -10.53 kcal Atomic # 7 Polarization: -103.27 SS G_CDS: -4.57 Total: -107.84 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Atomic # 16 Polarization: 2.39 SS G_CDS: -1.31 Total: 1.08 kcal Total: -65.20 1.92 -63.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591724869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.909 kcal (2) G-P(sol) polarization free energy of solvation -65.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.283 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds