Wall clock time and date at job start Tue Mar 31 2020 00:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33643 * 122.74867 * 2 1 4 4 S 1.76195 * 107.92356 * 180.02562 * 3 2 1 5 5 C 1.70979 * 90.28260 * 0.02562 * 4 3 2 6 6 C 1.50705 * 124.91250 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47244 * 270.02273 * 6 5 4 8 8 N 1.46906 * 109.46978 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 7 11 11 H 1.08990 * 109.47170 * 54.99770 * 10 9 8 12 12 C 1.47196 * 109.47160 * 294.99517 * 10 9 8 13 13 N 9.14356 * 149.02163 * 201.35350 * 2 1 3 14 14 C 1.53002 * 109.46776 * 174.99873 * 10 9 8 15 15 C 1.50701 * 109.46807 * 184.99822 * 14 10 9 16 16 H 1.07998 * 120.00496 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99849 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46764 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47029 * 119.99717 * 19 17 15 22 22 H 1.48494 * 109.47080 * 239.99687 * 19 17 15 23 23 N 1.29021 * 110.16642 * 0.23983 * 5 4 3 24 24 H 1.08997 * 109.47579 * 89.96876 * 1 2 3 25 25 H 1.09002 * 109.46981 * 209.97221 * 1 2 3 26 26 H 1.09002 * 109.47147 * 329.97059 * 1 2 3 27 27 H 1.07994 * 126.03514 * 0.04459 * 3 2 1 28 28 H 1.09005 * 109.46616 * 150.02829 * 6 5 4 29 29 H 1.09002 * 109.47100 * 30.02967 * 6 5 4 30 30 H 1.08995 * 109.46859 * 60.00696 * 7 6 5 31 31 H 1.09002 * 109.47639 * 300.00364 * 7 6 5 32 32 H 1.00898 * 110.99995 * 303.95410 * 8 7 6 33 33 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 34 34 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 35 35 H 1.08993 * 109.47416 * 304.99509 * 14 10 9 36 36 H 1.09001 * 109.46966 * 65.00241 * 14 10 9 37 37 H 0.97010 * 119.99808 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 -0.0007 5 6 3.5039 -0.9818 -0.0018 6 6 4.4836 -2.1270 -0.0033 7 6 4.8145 -2.5131 -1.4463 8 7 5.7690 -3.6298 -1.4478 9 6 6.1111 -4.0281 -2.8198 10 6 7.1044 -5.1912 -2.7804 11 1 6.6898 -6.0029 -2.1828 12 6 8.3691 -4.7363 -2.1802 13 7 9.3463 -4.3832 -1.7137 14 6 7.3650 -5.6875 -4.2041 15 6 8.2459 -6.9093 -4.1566 16 1 8.5863 -7.2932 -3.2063 17 6 8.6183 -7.5365 -5.3267 18 7 8.2052 -7.0682 -6.4841 19 14 9.7109 -9.0506 -5.2679 20 1 10.0370 -9.3711 -3.8551 21 1 8.9993 -10.1987 -5.8850 22 1 10.9653 -8.7852 -6.0171 23 7 2.2199 -1.1083 -0.0066 24 1 -0.3634 0.0006 -1.0276 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 1.8391 2.1307 0.0007 28 1 4.0435 -2.9822 0.5097 29 1 5.3962 -1.8252 0.5106 30 1 5.2545 -1.6580 -1.9593 31 1 3.9019 -2.8150 -1.9602 32 1 6.5980 -3.3976 -0.9216 33 1 6.5606 -3.1834 -3.3419 34 1 5.2075 -4.3399 -3.3436 35 1 6.4176 -5.9410 -4.6796 36 1 7.8610 -4.9040 -4.7769 37 1 8.4669 -7.5098 -7.3073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591724871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:34 Heat of formation + Delta-G solvation = 48.415225 kcal Electronic energy + Delta-G solvation = -17926.544841 eV Core-core repulsion = 15022.926990 eV Total energy + Delta-G solvation = -2903.617851 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.13547 -37.62579 -35.71783 -33.95949 -33.06366 -31.63751 -29.79761 -27.87305 -26.55523 -24.27350 -22.54061 -22.09756 -21.52021 -19.95448 -17.88095 -16.75084 -16.59939 -15.94339 -15.63053 -15.23607 -14.75315 -14.43483 -14.25670 -13.59162 -13.41729 -13.16955 -12.99772 -12.73261 -12.67161 -12.45454 -12.22259 -11.99516 -11.61839 -11.57044 -11.34000 -11.20129 -11.03058 -10.74413 -10.52852 -10.27416 -9.87520 -9.67356 -9.55743 -9.22870 -8.94532 -8.46773 -8.41486 -6.10077 -4.13125 0.43412 1.10697 1.49236 2.51101 3.28522 3.36726 3.41338 3.52538 3.57939 3.69625 4.25491 4.42005 4.74151 4.76968 4.85340 4.86560 4.96642 5.00970 5.27724 5.28117 5.33065 5.37140 5.49357 5.60420 5.67998 5.81461 5.84254 5.98299 6.13349 6.32963 6.52856 6.99675 7.35252 7.43442 7.51064 7.52166 7.85214 8.22472 8.37746 8.91742 9.52474 11.00859 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036095 B = 0.002625 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.539115 B =10662.167394 C =11049.169190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.068 3.932 3 C -0.270 4.270 4 S 0.115 5.885 5 C 0.065 3.935 6 C -0.045 4.045 7 C 0.067 3.933 8 N -0.690 5.690 9 C 0.068 3.932 10 C 0.007 3.993 11 H 0.112 0.888 12 C 0.241 3.759 13 N -0.477 5.477 14 C 0.032 3.968 15 C -0.526 4.526 16 H 0.058 0.942 17 C 0.062 3.938 18 N -0.892 5.892 19 Si 0.892 3.108 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.284 1.284 23 N -0.469 5.469 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.175 0.825 28 H 0.107 0.893 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.082 0.918 32 H 0.338 0.662 33 H 0.036 0.964 34 H 0.093 0.907 35 H 0.040 0.960 36 H 0.024 0.976 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.693 16.253 12.106 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.064 4.064 3 C -0.409 4.409 4 S 0.370 5.630 5 C -0.214 4.214 6 C -0.087 4.087 7 C -0.064 4.064 8 N -0.321 5.321 9 C -0.062 4.062 10 C -0.015 4.015 11 H 0.130 0.870 12 C -0.076 4.076 13 N -0.154 5.154 14 C -0.007 4.007 15 C -0.564 4.564 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.530 5.530 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.208 1.208 22 H -0.210 1.210 23 N -0.184 5.184 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.092 0.908 27 H 0.192 0.808 28 H 0.125 0.875 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.101 0.899 32 H 0.156 0.844 33 H 0.054 0.946 34 H 0.111 0.889 35 H 0.059 0.941 36 H 0.043 0.957 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.964 16.309 12.693 24.396 hybrid contribution -0.019 -0.154 -0.609 0.629 sum -12.983 16.154 12.084 23.990 Atomic orbital electron populations 1.20367 0.87084 1.03327 1.03071 1.20358 0.98348 0.86515 1.01162 1.26795 0.95150 1.03948 1.14971 1.84097 1.07424 1.03414 1.68072 1.27017 0.94026 0.98115 1.02239 1.20287 0.95414 0.93978 0.98973 1.21885 0.97604 0.92454 0.94481 1.60540 1.17826 1.38357 1.15345 1.22092 0.99144 0.96568 0.88387 1.19336 0.84106 0.97007 1.01033 0.86982 1.29456 0.94702 0.91905 0.91511 1.81164 1.11408 1.10875 1.11971 1.19175 0.98441 0.96500 0.86583 1.21184 1.30835 1.11490 0.92861 0.92414 1.24962 0.96080 0.97535 0.95461 1.69951 1.45203 1.40441 0.97446 0.86531 0.80405 0.82866 0.78262 1.19665 1.20805 1.21018 1.66143 1.04496 1.31488 1.16284 0.90532 0.90460 0.90815 0.80757 0.87479 0.89671 0.95027 0.89909 0.84390 0.94556 0.88867 0.94143 0.95734 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.31 36.01 0.37 -0.18 16 2 C 0.07 0.68 6.74 -84.22 -0.57 0.11 16 3 C -0.27 -2.30 11.13 29.12 0.32 -1.97 16 4 S 0.11 1.03 23.18 -107.50 -2.49 -1.47 16 5 C 0.06 0.69 6.64 -13.46 -0.09 0.60 16 6 C -0.05 -0.44 6.06 -27.88 -0.17 -0.61 16 7 C 0.07 0.73 5.67 -3.82 -0.02 0.71 16 8 N -0.69 -8.76 6.50 -113.78 -0.74 -9.50 16 9 C 0.07 0.99 5.12 -3.82 -0.02 0.97 16 10 C 0.01 0.13 2.42 -93.41 -0.23 -0.10 16 11 H 0.11 1.95 8.14 -51.93 -0.42 1.53 16 12 C 0.24 4.78 12.99 -20.66 -0.27 4.51 16 13 N -0.48 -10.22 18.56 42.27 0.78 -9.43 16 14 C 0.03 0.73 4.42 -27.88 -0.12 0.60 16 15 C -0.53 -13.95 8.60 -34.44 -0.30 -14.24 16 16 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 17 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 18 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 19 Si 0.89 21.31 29.54 -169.99 -5.02 16.29 16 20 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 23 N -0.47 -5.56 10.53 -8.06 -0.08 -5.64 16 24 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.07 0.36 8.12 -51.93 -0.42 -0.06 16 27 H 0.18 1.01 8.06 -52.49 -0.42 0.59 16 28 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.34 4.32 7.81 -39.29 -0.31 4.01 16 33 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.09 1.29 8.14 -51.93 -0.42 0.86 16 35 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 337.91 15.07 5.09 5.09 Total: -1.00 -30.64 337.91 -8.24 -38.88 By element: Atomic # 1 Polarization: 3.90 SS G_CDS: -5.34 Total: -1.43 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: -1.18 Total: -8.00 kcal Atomic # 7 Polarization: -50.06 SS G_CDS: 0.70 Total: -49.36 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: 1.03 SS G_CDS: -2.49 Total: -1.47 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.64 -8.24 -38.88 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591724871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.295 kcal (2) G-P(sol) polarization free energy of solvation -30.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.880 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds