Wall clock time and date at job start Tue Mar 31 2020 00:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.33643 * 122.74867 * 2 1 4 4 S 1.76195 * 107.92356 * 180.02562 * 3 2 1 5 5 C 1.70979 * 90.28260 * 0.02562 * 4 3 2 6 6 C 1.50705 * 124.91250 * 179.97438 * 5 4 3 7 7 C 1.52995 * 109.47244 * 270.02273 * 6 5 4 8 8 N 1.46906 * 109.46978 * 180.02562 * 7 6 5 9 9 C 1.46901 * 110.99793 * 180.02562 * 8 7 6 10 10 C 1.53000 * 109.46769 * 180.02562 * 9 8 7 11 11 H 1.08990 * 109.47170 * 54.99770 * 10 9 8 12 12 C 1.47196 * 109.47160 * 294.99517 * 10 9 8 13 13 N 9.14356 * 149.02163 * 201.35350 * 2 1 3 14 14 C 1.53002 * 109.46776 * 174.99873 * 10 9 8 15 15 C 1.50701 * 109.46807 * 184.99822 * 14 10 9 16 16 H 1.07998 * 120.00496 * 359.97438 * 15 14 10 17 17 C 1.37879 * 119.99849 * 180.02562 * 15 14 10 18 18 N 1.31514 * 119.99832 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00049 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46764 * 359.97438 * 19 17 15 21 21 H 1.48504 * 109.47029 * 119.99717 * 19 17 15 22 22 H 1.48494 * 109.47080 * 239.99687 * 19 17 15 23 23 N 1.29021 * 110.16642 * 0.23983 * 5 4 3 24 24 H 1.08997 * 109.47579 * 89.96876 * 1 2 3 25 25 H 1.09002 * 109.46981 * 209.97221 * 1 2 3 26 26 H 1.09002 * 109.47147 * 329.97059 * 1 2 3 27 27 H 1.07994 * 126.03514 * 0.04459 * 3 2 1 28 28 H 1.09005 * 109.46616 * 150.02829 * 6 5 4 29 29 H 1.09002 * 109.47100 * 30.02967 * 6 5 4 30 30 H 1.08995 * 109.46859 * 60.00696 * 7 6 5 31 31 H 1.09002 * 109.47639 * 300.00364 * 7 6 5 32 32 H 1.00898 * 110.99995 * 303.95410 * 8 7 6 33 33 H 1.09002 * 109.47401 * 59.99808 * 9 8 7 34 34 H 1.09001 * 109.46874 * 299.99821 * 9 8 7 35 35 H 1.08993 * 109.47416 * 304.99509 * 14 10 9 36 36 H 1.09001 * 109.46966 * 65.00241 * 14 10 9 37 37 H 0.97010 * 119.99808 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2299 1.1240 0.0000 4 16 3.9332 0.6732 -0.0007 5 6 3.5039 -0.9818 -0.0018 6 6 4.4836 -2.1270 -0.0033 7 6 4.8145 -2.5131 -1.4463 8 7 5.7690 -3.6298 -1.4478 9 6 6.1111 -4.0281 -2.8198 10 6 7.1044 -5.1912 -2.7804 11 1 6.6898 -6.0029 -2.1828 12 6 8.3691 -4.7363 -2.1802 13 7 9.3463 -4.3832 -1.7137 14 6 7.3650 -5.6875 -4.2041 15 6 8.2459 -6.9093 -4.1566 16 1 8.5863 -7.2932 -3.2063 17 6 8.6183 -7.5365 -5.3267 18 7 8.2052 -7.0682 -6.4841 19 14 9.7109 -9.0506 -5.2679 20 1 10.0370 -9.3711 -3.8551 21 1 8.9993 -10.1987 -5.8850 22 1 10.9653 -8.7852 -6.0171 23 7 2.2199 -1.1083 -0.0066 24 1 -0.3634 0.0006 -1.0276 25 1 -0.3633 -0.8903 0.5134 26 1 -0.3633 0.8897 0.5143 27 1 1.8391 2.1307 0.0007 28 1 4.0435 -2.9822 0.5097 29 1 5.3962 -1.8252 0.5106 30 1 5.2545 -1.6580 -1.9593 31 1 3.9019 -2.8150 -1.9602 32 1 6.5980 -3.3976 -0.9216 33 1 6.5606 -3.1834 -3.3419 34 1 5.2075 -4.3399 -3.3436 35 1 6.4176 -5.9410 -4.6796 36 1 7.8610 -4.9040 -4.7769 37 1 8.4669 -7.5098 -7.3073 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591724871.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:34 Heat of formation + Delta-G solvation = 29.170310 kcal Electronic energy + Delta-G solvation = -17927.379363 eV Core-core repulsion = 15022.926990 eV Total energy + Delta-G solvation = -2904.452373 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.85319 -38.96772 -36.99272 -35.59228 -34.40357 -32.98709 -30.82350 -28.55280 -28.12316 -25.44233 -23.79358 -23.59696 -22.55633 -20.66391 -18.67353 -18.44749 -18.24063 -17.01344 -16.71497 -16.40773 -15.97262 -15.44818 -15.32285 -14.82178 -14.52886 -14.35622 -14.17851 -13.92326 -13.79582 -13.49465 -13.41610 -13.25037 -13.07368 -12.86063 -12.60487 -12.46124 -12.30998 -12.22205 -12.17404 -11.90216 -11.40044 -11.14847 -10.61294 -10.55351 -10.37967 -9.63287 -9.45868 -8.19398 -6.27416 -0.27317 0.42087 0.79896 1.39602 1.42540 1.53022 1.78682 1.93020 1.95278 2.41757 2.88972 3.15818 3.24765 3.37820 3.98139 4.01470 4.16653 4.23067 4.28960 4.38526 4.42597 4.54988 4.69675 4.78644 4.84104 4.89971 4.92999 4.99233 5.05799 5.06497 5.37865 5.48204 5.62807 5.79840 5.92377 6.20904 6.31535 6.75650 6.80367 6.88060 7.41260 8.91767 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.036095 B = 0.002625 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.539115 B =10662.167394 C =11049.169190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.044 3.956 3 C -0.263 4.263 4 S 0.132 5.868 5 C 0.045 3.955 6 C -0.039 4.039 7 C 0.072 3.928 8 N -0.688 5.688 9 C 0.078 3.922 10 C 0.020 3.980 11 H 0.125 0.875 12 C 0.251 3.749 13 N -0.503 5.503 14 C 0.037 3.963 15 C -0.537 4.537 16 H 0.055 0.945 17 C 0.010 3.990 18 N -0.924 5.924 19 Si 0.949 3.051 20 H -0.269 1.269 21 H -0.273 1.273 22 H -0.285 1.285 23 N -0.498 5.498 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.096 0.904 27 H 0.202 0.798 28 H 0.101 0.899 29 H 0.098 0.902 30 H 0.036 0.964 31 H 0.076 0.924 32 H 0.340 0.660 33 H 0.036 0.964 34 H 0.103 0.897 35 H 0.036 0.964 36 H 0.001 0.999 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.301 16.971 12.952 26.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.088 4.088 3 C -0.402 4.402 4 S 0.388 5.612 5 C -0.233 4.233 6 C -0.080 4.080 7 C -0.058 4.058 8 N -0.319 5.319 9 C -0.052 4.052 10 C -0.002 4.002 11 H 0.142 0.858 12 C -0.065 4.065 13 N -0.181 5.181 14 C -0.002 4.002 15 C -0.576 4.576 16 H 0.073 0.927 17 C -0.189 4.189 18 N -0.564 5.564 19 Si 0.775 3.225 20 H -0.193 1.193 21 H -0.199 1.199 22 H -0.211 1.211 23 N -0.213 5.213 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.114 0.886 27 H 0.219 0.781 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.157 0.843 33 H 0.054 0.946 34 H 0.122 0.878 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.579 17.027 13.554 25.652 hybrid contribution 0.146 -0.312 -0.859 0.926 sum -13.434 16.715 12.695 24.920 Atomic orbital electron populations 1.20440 0.85445 1.04110 1.03628 1.20813 0.99646 0.86484 1.01842 1.27178 0.94747 1.04930 1.13359 1.83992 1.07773 1.02049 1.67429 1.27084 0.93985 0.99144 1.03110 1.20204 0.95887 0.93844 0.98065 1.21837 0.96722 0.91846 0.95435 1.60486 1.18031 1.39409 1.14008 1.21925 0.98443 0.95166 0.89657 1.19213 0.84223 0.98781 0.97981 0.85773 1.29748 0.94658 0.91139 0.90946 1.81167 1.12069 1.11989 1.12837 1.18999 0.97233 0.94716 0.89234 1.21593 1.30887 1.12451 0.92621 0.92699 1.25727 0.97505 1.00293 0.95374 1.70043 1.46568 1.41830 0.97986 0.85631 0.78657 0.79970 0.78242 1.19332 1.19858 1.21131 1.66160 1.05248 1.32968 1.16971 0.90032 0.91170 0.88559 0.78057 0.88075 0.88333 0.94593 0.90545 0.84263 0.94584 0.87838 0.94578 0.98038 0.92729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.96 10.31 71.24 0.73 -0.22 16 2 C 0.04 0.81 6.74 41.52 0.28 1.09 16 3 C -0.26 -3.95 11.13 66.78 0.74 -3.21 16 4 S 0.13 2.16 23.18 -56.49 -1.31 0.85 16 5 C 0.04 0.91 6.64 88.52 0.59 1.50 16 6 C -0.04 -0.72 6.06 29.85 0.18 -0.54 16 7 C 0.07 1.50 5.67 86.30 0.49 1.99 16 8 N -0.69 -16.50 6.50 -513.88 -3.34 -19.84 16 9 C 0.08 2.17 5.12 86.30 0.44 2.62 16 10 C 0.02 0.70 2.42 -12.60 -0.03 0.67 16 11 H 0.12 4.13 8.14 -2.39 -0.02 4.11 16 12 C 0.25 9.77 12.99 89.41 1.16 10.93 16 13 N -0.50 -21.20 18.56 20.04 0.37 -20.83 16 14 C 0.04 1.70 4.42 29.85 0.13 1.83 16 15 C -0.54 -28.41 8.60 25.60 0.22 -28.19 16 16 H 0.05 2.87 7.59 -2.91 -0.02 2.85 16 17 C 0.01 0.54 5.46 84.66 0.46 1.00 16 18 N -0.92 -53.15 13.29 21.45 0.28 -52.87 16 19 Si 0.95 43.50 29.54 68.60 2.03 45.52 16 20 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 23 N -0.50 -11.45 10.53 -179.40 -1.89 -13.33 16 24 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 25 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.10 0.72 8.12 -2.39 -0.02 0.70 16 27 H 0.20 1.73 8.06 -2.91 -0.02 1.71 16 28 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 29 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.34 8.14 7.81 -89.70 -0.70 7.44 16 33 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.10 2.70 8.14 -2.39 -0.02 2.68 16 35 H 0.04 1.68 8.14 -2.39 -0.02 1.66 16 36 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 37 H 0.26 14.37 8.31 -92.70 -0.77 13.60 16 Total: -1.00 -64.51 337.91 1.92 -62.59 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.37 Total: 8.44 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 5.40 Total: -10.54 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -4.57 Total: -106.87 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Atomic # 16 Polarization: 2.16 SS G_CDS: -1.31 Total: 0.85 kcal Total: -64.51 1.92 -62.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591724871.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.761 kcal (2) G-P(sol) polarization free energy of solvation -64.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds