Wall clock time and date at job start Tue Mar 31 2020 01:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52468 * 1 3 3 H 1.10429 * 107.98709 * 2 1 4 4 C 1.52666 * 111.27952 * 241.57215 * 2 1 3 5 5 N 1.45330 * 111.61908 * 314.84721 * 4 2 1 6 6 C 1.46906 * 111.01228 * 156.87371 * 5 4 2 7 7 C 1.50696 * 109.47097 * 64.32981 * 6 5 4 8 8 H 1.08001 * 119.99983 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00314 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99352 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00183 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47237 * 90.00197 * 11 9 7 13 13 H 1.48503 * 109.46832 * 209.99888 * 11 9 7 14 14 H 1.48494 * 109.47256 * 330.00010 * 11 9 7 15 15 C 1.45499 * 115.90979 * 284.57699 * 5 4 2 16 16 C 1.52961 * 110.48087 * 76.66569 * 15 5 4 17 17 C 1.51371 * 109.09068 * 278.49458 * 16 15 5 18 18 C 1.39142 * 116.83466 * 242.59545 * 17 16 15 19 19 C 1.37938 * 120.34389 * 179.89933 * 18 17 16 20 20 C 1.38369 * 119.70445 * 0.07631 * 19 18 17 21 21 Cl 1.73593 * 119.98457 * 180.02562 * 20 19 18 22 22 C 1.38040 * 119.78903 * 0.03855 * 20 19 18 23 23 C 1.36604 * 123.10425 * 62.65027 * 17 16 15 24 24 H 1.09001 * 109.46940 * 294.88416 * 1 2 3 25 25 H 1.09001 * 109.47261 * 174.88057 * 1 2 3 26 26 H 1.09005 * 109.46774 * 54.88035 * 1 2 3 27 27 H 1.09198 * 109.27660 * 75.42894 * 4 2 1 28 28 H 1.09194 * 109.29155 * 194.15743 * 4 2 1 29 29 H 1.09011 * 109.47046 * 184.32819 * 6 5 4 30 30 H 1.08998 * 109.47785 * 304.32596 * 6 5 4 31 31 H 0.97001 * 119.99732 * 179.97438 * 10 9 7 32 32 H 1.08976 * 109.17166 * 316.37451 * 15 5 4 33 33 H 1.08963 * 109.16880 * 197.01946 * 15 5 4 34 34 H 1.09780 * 108.82344 * 159.97696 * 16 15 5 35 35 H 1.08470 * 110.73723 * 41.06133 * 16 15 5 36 36 H 1.08073 * 119.34427 * 359.92710 * 18 17 16 37 37 H 1.07988 * 120.29212 * 180.10478 * 19 18 17 38 38 H 1.08072 * 120.33991 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5247 0.0000 0.0000 3 1 1.8657 1.0503 0.0000 4 6 2.0787 -0.6772 -1.2510 5 7 1.3852 -1.9217 -1.5379 6 6 1.5089 -2.2785 -2.9576 7 6 2.9551 -2.5487 -3.2835 8 1 3.7072 -2.4643 -2.5130 9 6 3.3182 -2.9048 -4.5651 10 7 2.4023 -3.0080 -5.5032 11 14 5.1108 -3.2404 -4.9689 12 1 5.4061 -4.6795 -4.7518 13 1 5.3725 -2.8900 -6.3881 14 1 5.9789 -2.4186 -4.0880 15 6 1.7277 -3.0512 -0.6870 16 6 1.0530 -2.9160 0.6791 17 6 1.8718 -1.9831 1.5455 18 6 2.4208 -2.5224 2.7047 19 6 3.1815 -1.7374 3.5461 20 6 3.3967 -0.4067 3.2341 21 17 4.3533 0.5877 4.2874 22 6 2.8484 0.1255 2.0844 23 6 2.0815 -0.6692 1.2361 24 1 -0.3633 0.4324 0.9323 25 1 -0.3634 -1.0236 -0.0917 26 1 -0.3633 0.5912 -0.8406 27 1 1.9679 -0.0046 -2.1041 28 1 3.1409 -0.8863 -1.1077 29 1 0.9176 -3.1716 -3.1606 30 1 1.1456 -1.4549 -3.5723 31 1 2.6577 -3.2581 -6.4050 32 1 2.8089 -3.0842 -0.5541 33 1 1.3964 -3.9726 -1.1649 34 1 1.0201 -3.9038 1.1571 35 1 0.0355 -2.5561 0.5710 36 1 2.2458 -3.5628 2.9393 37 1 3.6086 -2.1573 4.4447 38 1 3.0111 1.1636 1.8318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593065836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:25 Heat of formation + Delta-G solvation = 9.196879 kcal Electronic energy + Delta-G solvation = -19868.908470 eV Core-core repulsion = 16929.253527 eV Total energy + Delta-G solvation = -2939.654943 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.06954 -37.37053 -36.28201 -33.93743 -33.04060 -31.87552 -29.95867 -28.23395 -26.78659 -24.81653 -23.78780 -22.58488 -21.99922 -19.90837 -19.07375 -16.82514 -16.12933 -15.96742 -15.19387 -14.77530 -14.54011 -14.20687 -13.93807 -13.56331 -13.43910 -13.06425 -12.60102 -12.43261 -12.17477 -11.84428 -11.61049 -11.36963 -11.34846 -11.03527 -11.00056 -10.82020 -10.76466 -10.55593 -10.38299 -10.18408 -9.95270 -9.81716 -9.56249 -8.75334 -8.44906 -8.35345 -7.11168 -6.03857 -4.13947 1.26662 1.36289 2.14506 3.25673 3.32983 3.36287 3.70124 4.39153 4.74179 4.83996 4.90577 4.98230 5.25444 5.27644 5.29736 5.44197 5.60529 5.73747 5.77226 5.88531 5.94126 5.97137 6.05652 6.18692 6.25076 6.30224 6.38432 6.46933 6.60223 6.66718 6.71184 6.82723 6.86876 6.98838 7.32171 7.50992 7.87795 8.07724 8.28147 8.44194 8.97155 9.53788 11.00064 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.004813 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.526211 B = 5815.600113 C = 6294.345166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 H 0.068 0.932 4 C 0.091 3.909 5 N -0.560 5.560 6 C 0.196 3.804 7 C -0.549 4.549 8 H 0.054 0.946 9 C 0.066 3.934 10 N -0.891 5.891 11 Si 0.887 3.113 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.275 1.275 15 C 0.086 3.914 16 C -0.085 4.085 17 C -0.058 4.058 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.041 4.041 21 Cl -0.084 7.084 22 C -0.112 4.112 23 C -0.048 4.048 24 H 0.039 0.961 25 H 0.077 0.923 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 4.046 16.386 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.070 4.070 3 H 0.086 0.914 4 C -0.038 4.038 5 N -0.284 5.284 6 C 0.071 3.929 7 C -0.588 4.588 8 H 0.072 0.928 9 C -0.137 4.137 10 N -0.529 5.529 11 Si 0.715 3.285 12 H -0.206 1.206 13 H -0.211 1.211 14 H -0.200 1.200 15 C -0.042 4.042 16 C -0.122 4.122 17 C -0.058 4.058 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.067 4.067 21 Cl -0.056 7.056 22 C -0.131 4.131 23 C -0.048 4.048 24 H 0.058 0.942 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.085 4.188 16.374 17.030 hybrid contribution 2.222 -0.267 -0.316 2.261 sum 0.137 3.921 16.059 16.531 Atomic orbital electron populations 1.21551 0.93650 1.03620 1.00033 1.20485 0.96772 0.97926 0.91781 0.91373 1.21358 0.95280 0.92159 0.94991 1.59733 1.59074 1.02521 1.07059 1.19754 0.95249 0.96697 0.81204 1.21799 0.94412 1.47397 0.95224 0.92805 1.24949 0.97140 0.95184 0.96412 1.69936 1.32852 1.47794 1.02358 0.86680 0.85633 0.78607 0.77625 1.20649 1.21123 1.20029 1.21405 0.97403 0.94487 0.90945 1.21093 0.99200 0.96750 0.95197 1.19829 0.97459 0.93751 0.94794 1.21332 0.97706 0.99723 0.94135 1.20884 1.00269 0.92021 1.00652 1.20753 0.99576 0.92302 0.94084 1.98345 1.71076 1.70119 1.66037 1.21305 0.98205 1.00416 0.93176 1.19664 0.96376 0.92915 0.95883 0.94224 0.90448 0.92494 0.90962 0.95306 0.95166 0.95175 0.92817 0.95211 0.90898 0.91656 0.89381 0.85319 0.85471 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.89 36.89 0.33 -1.50 16 2 C -0.05 -0.76 2.57 -91.97 -0.24 -0.99 16 3 H 0.07 0.92 7.63 -51.11 -0.39 0.53 16 4 C 0.09 1.70 4.27 -4.84 -0.02 1.67 16 5 N -0.56 -11.13 3.24 -238.65 -0.77 -11.90 16 6 C 0.20 4.81 4.88 -4.97 -0.02 4.79 16 7 C -0.55 -14.73 8.04 -34.44 -0.28 -15.01 16 8 H 0.05 1.46 6.62 -52.49 -0.35 1.11 16 9 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 10 N -0.89 -25.72 13.29 55.43 0.74 -24.99 16 11 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 13 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 C 0.09 1.58 4.72 -4.60 -0.02 1.56 16 16 C -0.08 -1.22 5.27 -27.57 -0.15 -1.37 16 17 C -0.06 -0.84 5.09 -104.55 -0.53 -1.37 16 18 C -0.11 -1.40 9.57 -39.36 -0.38 -1.78 16 19 C -0.12 -1.48 9.84 -39.64 -0.39 -1.87 16 20 C -0.04 -0.54 6.31 -39.61 -0.25 -0.79 16 21 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 16 22 C -0.11 -1.54 9.35 -39.27 -0.37 -1.91 16 23 C -0.05 -0.71 4.68 -104.59 -0.49 -1.20 16 24 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.08 1.15 4.79 -51.93 -0.25 0.90 16 26 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.07 1.41 7.70 -51.82 -0.40 1.01 16 28 H 0.03 0.60 7.19 -51.82 -0.37 0.22 16 29 H 0.03 0.79 7.88 -51.92 -0.41 0.39 16 30 H 0.03 0.80 7.92 -51.93 -0.41 0.38 16 31 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 32 H 0.03 0.60 7.27 -51.94 -0.38 0.22 16 33 H 0.07 1.38 7.65 -51.95 -0.40 0.99 16 34 H 0.06 0.80 7.66 -51.49 -0.39 0.40 16 35 H 0.09 1.25 5.90 -52.23 -0.31 0.94 16 36 H 0.13 1.34 7.72 -52.45 -0.41 0.94 16 37 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 38 H 0.13 1.59 7.67 -52.45 -0.40 1.19 16 LS Contribution 311.53 15.07 4.69 4.69 Total: -1.00 -27.91 311.53 -10.03 -37.94 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -5.27 Total: -1.48 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.90 Total: -18.03 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: -0.04 Total: -36.89 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.91 -10.03 -37.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593065836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.134 kcal (2) G-P(sol) polarization free energy of solvation -27.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds