Wall clock time and date at job start Tue Mar 31 2020 01:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52468 * 1 3 3 H 1.10429 * 107.98709 * 2 1 4 4 C 1.52666 * 111.27952 * 241.57215 * 2 1 3 5 5 N 1.45330 * 111.61908 * 314.84721 * 4 2 1 6 6 C 1.46906 * 111.01228 * 156.87371 * 5 4 2 7 7 C 1.50696 * 109.47097 * 64.32981 * 6 5 4 8 8 H 1.08001 * 119.99983 * 0.02562 * 7 6 5 9 9 C 1.37883 * 120.00314 * 179.97438 * 7 6 5 10 10 N 1.31512 * 119.99352 * 0.02562 * 9 7 6 11 11 Si 1.86793 * 120.00183 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47237 * 90.00197 * 11 9 7 13 13 H 1.48503 * 109.46832 * 209.99888 * 11 9 7 14 14 H 1.48494 * 109.47256 * 330.00010 * 11 9 7 15 15 C 1.45499 * 115.90979 * 284.57699 * 5 4 2 16 16 C 1.52961 * 110.48087 * 76.66569 * 15 5 4 17 17 C 1.51371 * 109.09068 * 278.49458 * 16 15 5 18 18 C 1.39142 * 116.83466 * 242.59545 * 17 16 15 19 19 C 1.37938 * 120.34389 * 179.89933 * 18 17 16 20 20 C 1.38369 * 119.70445 * 0.07631 * 19 18 17 21 21 Cl 1.73593 * 119.98457 * 180.02562 * 20 19 18 22 22 C 1.38040 * 119.78903 * 0.03855 * 20 19 18 23 23 C 1.36604 * 123.10425 * 62.65027 * 17 16 15 24 24 H 1.09001 * 109.46940 * 294.88416 * 1 2 3 25 25 H 1.09001 * 109.47261 * 174.88057 * 1 2 3 26 26 H 1.09005 * 109.46774 * 54.88035 * 1 2 3 27 27 H 1.09198 * 109.27660 * 75.42894 * 4 2 1 28 28 H 1.09194 * 109.29155 * 194.15743 * 4 2 1 29 29 H 1.09011 * 109.47046 * 184.32819 * 6 5 4 30 30 H 1.08998 * 109.47785 * 304.32596 * 6 5 4 31 31 H 0.97001 * 119.99732 * 179.97438 * 10 9 7 32 32 H 1.08976 * 109.17166 * 316.37451 * 15 5 4 33 33 H 1.08963 * 109.16880 * 197.01946 * 15 5 4 34 34 H 1.09780 * 108.82344 * 159.97696 * 16 15 5 35 35 H 1.08470 * 110.73723 * 41.06133 * 16 15 5 36 36 H 1.08073 * 119.34427 * 359.92710 * 18 17 16 37 37 H 1.07988 * 120.29212 * 180.10478 * 19 18 17 38 38 H 1.08072 * 120.33991 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5247 0.0000 0.0000 3 1 1.8657 1.0503 0.0000 4 6 2.0787 -0.6772 -1.2510 5 7 1.3852 -1.9217 -1.5379 6 6 1.5089 -2.2785 -2.9576 7 6 2.9551 -2.5487 -3.2835 8 1 3.7072 -2.4643 -2.5130 9 6 3.3182 -2.9048 -4.5651 10 7 2.4023 -3.0080 -5.5032 11 14 5.1108 -3.2404 -4.9689 12 1 5.4061 -4.6795 -4.7518 13 1 5.3725 -2.8900 -6.3881 14 1 5.9789 -2.4186 -4.0880 15 6 1.7277 -3.0512 -0.6870 16 6 1.0530 -2.9160 0.6791 17 6 1.8718 -1.9831 1.5455 18 6 2.4208 -2.5224 2.7047 19 6 3.1815 -1.7374 3.5461 20 6 3.3967 -0.4067 3.2341 21 17 4.3533 0.5877 4.2874 22 6 2.8484 0.1255 2.0844 23 6 2.0815 -0.6692 1.2361 24 1 -0.3633 0.4324 0.9323 25 1 -0.3634 -1.0236 -0.0917 26 1 -0.3633 0.5912 -0.8406 27 1 1.9679 -0.0046 -2.1041 28 1 3.1409 -0.8863 -1.1077 29 1 0.9176 -3.1716 -3.1606 30 1 1.1456 -1.4549 -3.5723 31 1 2.6577 -3.2581 -6.4050 32 1 2.8089 -3.0842 -0.5541 33 1 1.3964 -3.9726 -1.1649 34 1 1.0201 -3.9038 1.1571 35 1 0.0355 -2.5561 0.5710 36 1 2.2458 -3.5628 2.9393 37 1 3.6086 -2.1573 4.4447 38 1 3.0111 1.1636 1.8318 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593065836.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:23 Heat of formation + Delta-G solvation = -4.324409 kcal Electronic energy + Delta-G solvation = -19869.494797 eV Core-core repulsion = 16929.253527 eV Total energy + Delta-G solvation = -2940.241270 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.21793 -38.71851 -37.36345 -35.38520 -34.60851 -33.46241 -31.04532 -29.62080 -28.46959 -26.45181 -25.08869 -23.86176 -23.46033 -21.23736 -20.39990 -18.63609 -17.47789 -17.24737 -16.58988 -16.24001 -16.05191 -15.64947 -15.38950 -14.70948 -14.49032 -14.44345 -14.21846 -13.66381 -13.49340 -13.31729 -13.14204 -12.88231 -12.71864 -12.62111 -12.44007 -12.19047 -12.07957 -11.95476 -11.82924 -11.74188 -11.64207 -11.29519 -11.16994 -10.60008 -9.77896 -9.43981 -8.88254 -8.12765 -6.34760 0.23216 0.34705 1.16512 1.34292 1.35633 1.45357 2.36105 2.66279 3.09418 3.33481 3.63330 3.80199 3.95543 4.12504 4.21516 4.35848 4.43370 4.47997 4.53585 4.64005 4.72233 4.81149 4.86025 4.95177 5.05762 5.09215 5.19240 5.24337 5.28335 5.30191 5.35779 5.36315 5.41594 5.68303 5.74850 5.76217 5.93178 6.09479 6.30598 6.78152 6.87895 7.37411 8.86297 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020515 B = 0.004813 C = 0.004447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.526211 B = 5815.600113 C = 6294.345166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.043 4.043 3 H 0.084 0.916 4 C 0.097 3.903 5 N -0.550 5.550 6 C 0.208 3.792 7 C -0.555 4.555 8 H 0.047 0.953 9 C 0.016 3.984 10 N -0.923 5.923 11 Si 0.951 3.049 12 H -0.273 1.273 13 H -0.279 1.279 14 H -0.274 1.274 15 C 0.089 3.911 16 C -0.074 4.074 17 C -0.075 4.075 18 C -0.108 4.108 19 C -0.118 4.118 20 C -0.047 4.047 21 Cl -0.075 7.075 22 C -0.120 4.120 23 C -0.064 4.064 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.004 0.996 29 H 0.008 0.992 30 H 0.005 0.995 31 H 0.265 0.735 32 H 0.008 0.992 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.074 3.946 18.517 18.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.062 4.062 3 H 0.102 0.898 4 C -0.032 4.032 5 N -0.274 5.274 6 C 0.082 3.918 7 C -0.594 4.594 8 H 0.065 0.935 9 C -0.184 4.184 10 N -0.563 5.563 11 Si 0.776 3.224 12 H -0.199 1.199 13 H -0.205 1.205 14 H -0.198 1.198 15 C -0.040 4.040 16 C -0.111 4.111 17 C -0.075 4.075 18 C -0.126 4.126 19 C -0.136 4.136 20 C -0.074 4.074 21 Cl -0.046 7.046 22 C -0.138 4.138 23 C -0.064 4.064 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.022 0.978 29 H 0.027 0.973 30 H 0.024 0.976 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.172 0.828 37 H 0.168 0.832 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.452 4.093 18.528 19.031 hybrid contribution 2.040 -0.215 -0.927 2.251 sum 0.588 3.878 17.602 18.033 Atomic orbital electron populations 1.21502 0.92662 1.03134 1.01018 1.20372 0.97501 0.98247 0.90069 0.89800 1.21343 0.93988 0.91358 0.96504 1.59737 1.59260 1.03572 1.04785 1.19427 0.93762 0.94649 0.83950 1.22001 0.95227 1.47029 0.95190 0.93512 1.25727 1.01244 0.95045 0.96355 1.70042 1.34824 1.48660 1.02764 0.85671 0.80599 0.78637 0.77477 1.19858 1.20482 1.19846 1.21436 0.96476 0.93223 0.92827 1.20962 0.98881 0.98603 0.92634 1.19914 0.98206 0.93668 0.95707 1.21602 0.96806 1.00954 0.93237 1.21194 0.99588 0.91636 1.01230 1.20913 0.99473 0.92920 0.94060 1.98349 1.70739 1.69929 1.65572 1.21407 0.98125 1.00890 0.93417 1.19662 0.97341 0.93480 0.95956 0.92226 0.91465 0.92663 0.92664 0.97794 0.97340 0.97640 0.92588 0.97388 0.92139 0.88858 0.88965 0.82788 0.83175 0.84460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.89 71.81 0.64 -2.72 16 2 C -0.04 -1.26 2.57 -11.67 -0.03 -1.29 16 3 H 0.08 2.19 7.63 -1.62 -0.01 2.17 16 4 C 0.10 3.70 4.27 86.49 0.37 4.07 16 5 N -0.55 -22.52 3.24 -908.94 -2.95 -25.46 16 6 C 0.21 10.71 4.88 85.55 0.42 11.12 16 7 C -0.56 -30.67 8.04 25.60 0.21 -30.46 16 8 H 0.05 2.61 6.62 -2.91 -0.02 2.59 16 9 C 0.02 0.89 5.46 84.66 0.46 1.36 16 10 N -0.92 -54.40 13.29 21.45 0.28 -54.12 16 11 Si 0.95 44.09 29.54 68.60 2.03 46.12 16 12 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 13 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 14 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 15 C 0.09 3.28 4.72 86.55 0.41 3.69 16 16 C -0.07 -2.00 5.27 30.05 0.16 -1.85 16 17 C -0.07 -2.01 5.09 -19.82 -0.10 -2.11 16 18 C -0.11 -2.41 9.57 22.42 0.21 -2.20 16 19 C -0.12 -2.55 9.84 22.23 0.22 -2.33 16 20 C -0.05 -1.13 6.31 22.25 0.14 -0.99 16 21 Cl -0.07 -1.61 28.96 -2.72 -0.08 -1.69 16 22 C -0.12 -3.07 9.35 22.47 0.21 -2.86 16 23 C -0.06 -1.80 4.68 -19.85 -0.09 -1.89 16 24 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 25 H 0.07 1.93 4.79 -2.39 -0.01 1.92 16 26 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 27 H 0.05 2.25 7.70 -2.28 -0.02 2.24 16 28 H 0.00 0.16 7.19 -2.28 -0.02 0.15 16 29 H 0.01 0.47 7.88 -2.38 -0.02 0.45 16 30 H 0.01 0.30 7.92 -2.39 -0.02 0.29 16 31 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 32 H 0.01 0.32 7.27 -2.40 -0.02 0.31 16 33 H 0.06 2.35 7.65 -2.41 -0.02 2.33 16 34 H 0.09 2.03 7.66 -1.97 -0.02 2.01 16 35 H 0.09 2.47 5.90 -2.67 -0.02 2.45 16 36 H 0.15 2.59 7.72 -2.87 -0.02 2.57 16 37 H 0.15 2.52 8.06 -2.92 -0.02 2.49 16 38 H 0.14 3.17 7.67 -2.87 -0.02 3.14 16 Total: -1.00 -60.64 311.53 3.57 -57.07 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: 1.06 Total: 6.54 kcal Atomic # 6 Polarization: -31.68 SS G_CDS: 3.22 Total: -28.46 kcal Atomic # 7 Polarization: -76.92 SS G_CDS: -2.66 Total: -79.58 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -60.64 3.57 -57.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593065836.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.747 kcal (2) G-P(sol) polarization free energy of solvation -60.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds