Wall clock time and date at job start Tue Mar 31 2020 01:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52472 * 1 3 3 H 1.10424 * 108.00584 * 2 1 4 4 C 1.52692 * 111.27591 * 118.43485 * 2 1 3 5 5 N 1.45297 * 111.61540 * 45.03288 * 4 2 1 6 6 C 1.46908 * 111.02950 * 203.30773 * 5 4 2 7 7 C 1.50693 * 109.47391 * 295.64367 * 6 5 4 8 8 H 1.08004 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00325 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99535 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00268 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46749 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.46856 * 120.00130 * 11 9 7 14 14 H 1.48491 * 109.47121 * 240.00094 * 11 9 7 15 15 C 1.45507 * 115.91871 * 75.57787 * 5 4 2 16 16 C 1.52964 * 110.47590 * 283.43852 * 15 5 4 17 17 C 1.51368 * 109.12465 * 81.36548 * 16 15 5 18 18 C 1.39143 * 116.82072 * 117.07709 * 17 16 15 19 19 C 1.37945 * 120.34262 * 179.97438 * 18 17 16 20 20 C 1.38351 * 119.70478 * 359.91392 * 19 18 17 21 21 Cl 1.73594 * 119.98648 * 180.11464 * 20 19 18 22 22 C 1.38038 * 119.79165 * 0.09394 * 20 19 18 23 23 C 1.36606 * 123.12165 * 297.10257 * 17 16 15 24 24 H 1.08998 * 109.46875 * 185.12577 * 1 2 3 25 25 H 1.08994 * 109.47003 * 305.12342 * 1 2 3 26 26 H 1.08998 * 109.46873 * 65.13166 * 1 2 3 27 27 H 1.09210 * 109.27899 * 284.45160 * 4 2 1 28 28 H 1.09189 * 109.30654 * 165.71283 * 4 2 1 29 29 H 1.09004 * 109.47022 * 55.64416 * 6 5 4 30 30 H 1.09002 * 109.46967 * 175.63942 * 6 5 4 31 31 H 0.97001 * 119.99990 * 179.97438 * 10 9 7 32 32 H 1.08988 * 109.16512 * 43.74890 * 15 5 4 33 33 H 1.08969 * 109.16035 * 163.10404 * 15 5 4 34 34 H 1.09775 * 108.81826 * 199.89869 * 16 15 5 35 35 H 1.08483 * 110.73679 * 318.81688 * 16 15 5 36 36 H 1.08066 * 119.34121 * 359.92890 * 18 17 16 37 37 H 1.07984 * 120.28771 * 179.97438 * 19 18 17 38 38 H 1.08071 * 120.34266 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5247 0.0000 0.0000 3 1 1.8661 1.0502 0.0000 4 6 2.0788 -0.6775 1.2512 5 7 1.3835 -1.9203 1.5393 6 6 1.5038 -2.2746 2.9599 7 6 2.9489 -2.5466 3.2892 8 1 3.7027 -2.4650 2.5200 9 6 3.3090 -2.8998 4.5724 10 7 2.3911 -2.9998 5.5090 11 14 5.1003 -3.2377 4.9804 12 1 5.9280 -3.0587 3.7605 13 1 5.5558 -2.2915 6.0303 14 1 5.2412 -4.6308 5.4748 15 6 1.7257 -3.0520 0.6911 16 6 1.0551 -2.9173 -0.6771 17 6 1.8761 -1.9851 -1.5421 18 6 2.4338 -2.5273 -2.6958 19 6 3.1949 -1.7426 -3.5371 20 6 3.4018 -0.4094 -3.2307 21 17 4.3559 0.5854 -4.2858 22 6 2.8471 0.1250 -2.0852 23 6 2.0813 -0.6696 -1.2360 24 1 -0.3633 -1.0236 0.0918 25 1 -0.3633 0.5912 0.8405 26 1 -0.3633 0.4322 -0.9324 27 1 1.9699 -0.0041 2.1041 28 1 3.1403 -0.8888 1.1073 29 1 1.1408 -1.4491 3.5723 30 1 0.9107 -3.1662 3.1635 31 1 2.6443 -3.2486 6.4117 32 1 2.8073 -3.0880 0.5617 33 1 1.3903 -3.9718 1.1695 34 1 1.0231 -3.9052 -1.1546 35 1 0.0374 -2.5567 -0.5722 36 1 2.2654 -3.5697 -2.9260 37 1 3.6277 -2.1645 -4.4320 38 1 3.0033 1.1652 -1.8370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593065837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:27 Heat of formation + Delta-G solvation = 9.149953 kcal Electronic energy + Delta-G solvation = -19869.053540 eV Core-core repulsion = 16929.396561 eV Total energy + Delta-G solvation = -2939.656978 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.06931 -37.37091 -36.28194 -33.93765 -33.04080 -31.87574 -29.95704 -28.23470 -26.78875 -24.81720 -23.78719 -22.58624 -22.00051 -19.90909 -19.07305 -16.82595 -16.13075 -15.96823 -15.19282 -14.77638 -14.53848 -14.20827 -13.93690 -13.56273 -13.43800 -13.06385 -12.60530 -12.43209 -12.17454 -11.84702 -11.61289 -11.36898 -11.34631 -11.03409 -11.01373 -10.82148 -10.74951 -10.55731 -10.39063 -10.18608 -9.95340 -9.80710 -9.55482 -8.75308 -8.45331 -8.35326 -7.11100 -6.04059 -4.14120 1.26702 1.36324 2.14513 3.24645 3.33286 3.37130 3.70152 4.39071 4.74208 4.84088 4.90566 4.98266 5.25308 5.27650 5.29737 5.44260 5.60573 5.73737 5.77222 5.88606 5.94101 5.97172 6.05681 6.18663 6.25111 6.30220 6.38442 6.46939 6.60149 6.66687 6.71161 6.82785 6.86900 6.98853 7.32098 7.51127 7.87718 8.07653 8.28107 8.44228 8.97264 9.53714 10.99841 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.004811 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.305384 B = 5818.594988 C = 6295.578995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.050 4.050 3 H 0.068 0.932 4 C 0.091 3.909 5 N -0.560 5.560 6 C 0.196 3.804 7 C -0.548 4.548 8 H 0.054 0.946 9 C 0.065 3.935 10 N -0.891 5.891 11 Si 0.886 3.114 12 H -0.275 1.275 13 H -0.283 1.283 14 H -0.283 1.283 15 C 0.086 3.914 16 C -0.085 4.085 17 C -0.058 4.058 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.041 4.041 21 Cl -0.085 7.085 22 C -0.112 4.112 23 C -0.048 4.048 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.039 0.961 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.030 0.970 30 H 0.030 0.970 31 H 0.262 0.738 32 H 0.030 0.970 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.088 0.912 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.671 4.023 -16.405 16.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.070 4.070 3 H 0.086 0.914 4 C -0.038 4.038 5 N -0.284 5.284 6 C 0.071 3.929 7 C -0.588 4.588 8 H 0.073 0.927 9 C -0.137 4.137 10 N -0.529 5.529 11 Si 0.714 3.286 12 H -0.199 1.199 13 H -0.209 1.209 14 H -0.209 1.209 15 C -0.042 4.042 16 C -0.122 4.122 17 C -0.058 4.058 18 C -0.129 4.129 19 C -0.138 4.138 20 C -0.067 4.067 21 Cl -0.056 7.056 22 C -0.131 4.131 23 C -0.048 4.048 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.090 0.910 28 H 0.047 0.953 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.071 0.929 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.045 4.162 -16.399 17.042 hybrid contribution 2.215 -0.260 0.334 2.255 sum 0.169 3.902 -16.066 16.534 Atomic orbital electron populations 1.21548 0.93651 1.03622 1.00029 1.20490 0.96780 0.97922 0.91770 0.91370 1.21357 0.95258 0.92178 0.94989 1.59714 1.59040 1.02542 1.07111 1.19758 0.95280 0.96716 0.81174 1.21837 0.94439 1.47320 0.95168 0.92745 1.24953 0.97133 0.95191 0.96433 1.69947 1.32722 1.47948 1.02322 0.86627 0.85587 0.77966 0.78388 1.19925 1.20939 1.20937 1.21409 0.97435 0.94451 0.90938 1.21093 0.99184 0.96759 0.95204 1.19830 0.97442 0.93733 0.94825 1.21335 0.97660 0.99724 0.94179 1.20881 1.00287 0.92000 1.00658 1.20747 0.99590 0.92258 0.94115 1.98345 1.71225 1.70095 1.65917 1.21302 0.98166 1.00413 0.93224 1.19663 0.96394 0.92915 0.95871 0.90450 0.92495 0.94226 0.90958 0.95312 0.95178 0.95156 0.92874 0.95200 0.90897 0.91655 0.89389 0.85319 0.85472 0.85324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.83 8.89 36.89 0.33 -1.50 16 2 C -0.05 -0.76 2.57 -91.96 -0.24 -0.99 16 3 H 0.07 0.92 7.63 -51.11 -0.39 0.53 16 4 C 0.09 1.70 4.27 -4.85 -0.02 1.67 16 5 N -0.56 -11.13 3.23 -238.64 -0.77 -11.90 16 6 C 0.20 4.81 4.88 -4.97 -0.02 4.78 16 7 C -0.55 -14.71 8.04 -34.44 -0.28 -14.99 16 8 H 0.05 1.48 6.62 -52.48 -0.35 1.13 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -25.71 13.29 55.43 0.74 -24.98 16 11 Si 0.89 21.30 29.54 -169.99 -5.02 16.28 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 14 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 15 C 0.09 1.58 4.72 -4.59 -0.02 1.56 16 16 C -0.08 -1.22 5.27 -27.57 -0.15 -1.37 16 17 C -0.06 -0.84 5.09 -104.55 -0.53 -1.37 16 18 C -0.11 -1.41 9.57 -39.35 -0.38 -1.78 16 19 C -0.12 -1.48 9.84 -39.65 -0.39 -1.87 16 20 C -0.04 -0.54 6.31 -39.61 -0.25 -0.79 16 21 Cl -0.08 -1.01 28.96 -51.86 -1.50 -2.51 16 22 C -0.11 -1.54 9.35 -39.28 -0.37 -1.91 16 23 C -0.05 -0.71 4.68 -104.59 -0.49 -1.20 16 24 H 0.08 1.15 4.79 -51.93 -0.25 0.90 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 1.41 7.70 -51.81 -0.40 1.01 16 28 H 0.03 0.59 7.19 -51.82 -0.37 0.22 16 29 H 0.03 0.79 7.92 -51.93 -0.41 0.38 16 30 H 0.03 0.80 7.88 -51.93 -0.41 0.39 16 31 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 32 H 0.03 0.60 7.27 -51.94 -0.38 0.23 16 33 H 0.07 1.38 7.65 -51.95 -0.40 0.98 16 34 H 0.06 0.80 7.66 -51.49 -0.39 0.40 16 35 H 0.09 1.25 5.90 -52.22 -0.31 0.94 16 36 H 0.13 1.34 7.72 -52.45 -0.41 0.94 16 37 H 0.13 1.31 8.06 -52.50 -0.42 0.89 16 38 H 0.13 1.59 7.67 -52.45 -0.40 1.19 16 LS Contribution 311.54 15.07 4.69 4.69 Total: -1.00 -27.94 311.54 -10.03 -37.97 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -5.27 Total: -1.52 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -2.90 Total: -18.03 kcal Atomic # 7 Polarization: -36.84 SS G_CDS: -0.04 Total: -36.88 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.51 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -27.94 -10.03 -37.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593065837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.115 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds