Wall clock time and date at job start Tue Mar 31 2020 01:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52472 * 1 3 3 H 1.10424 * 108.00584 * 2 1 4 4 C 1.52692 * 111.27591 * 118.43485 * 2 1 3 5 5 N 1.45297 * 111.61540 * 45.03288 * 4 2 1 6 6 C 1.46908 * 111.02950 * 203.30773 * 5 4 2 7 7 C 1.50693 * 109.47391 * 295.64367 * 6 5 4 8 8 H 1.08004 * 120.00056 * 359.97438 * 7 6 5 9 9 C 1.37881 * 120.00325 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99535 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00268 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.46749 * 0.02562 * 11 9 7 13 13 H 1.48493 * 109.46856 * 120.00130 * 11 9 7 14 14 H 1.48491 * 109.47121 * 240.00094 * 11 9 7 15 15 C 1.45507 * 115.91871 * 75.57787 * 5 4 2 16 16 C 1.52964 * 110.47590 * 283.43852 * 15 5 4 17 17 C 1.51368 * 109.12465 * 81.36548 * 16 15 5 18 18 C 1.39143 * 116.82072 * 117.07709 * 17 16 15 19 19 C 1.37945 * 120.34262 * 179.97438 * 18 17 16 20 20 C 1.38351 * 119.70478 * 359.91392 * 19 18 17 21 21 Cl 1.73594 * 119.98648 * 180.11464 * 20 19 18 22 22 C 1.38038 * 119.79165 * 0.09394 * 20 19 18 23 23 C 1.36606 * 123.12165 * 297.10257 * 17 16 15 24 24 H 1.08998 * 109.46875 * 185.12577 * 1 2 3 25 25 H 1.08994 * 109.47003 * 305.12342 * 1 2 3 26 26 H 1.08998 * 109.46873 * 65.13166 * 1 2 3 27 27 H 1.09210 * 109.27899 * 284.45160 * 4 2 1 28 28 H 1.09189 * 109.30654 * 165.71283 * 4 2 1 29 29 H 1.09004 * 109.47022 * 55.64416 * 6 5 4 30 30 H 1.09002 * 109.46967 * 175.63942 * 6 5 4 31 31 H 0.97001 * 119.99990 * 179.97438 * 10 9 7 32 32 H 1.08988 * 109.16512 * 43.74890 * 15 5 4 33 33 H 1.08969 * 109.16035 * 163.10404 * 15 5 4 34 34 H 1.09775 * 108.81826 * 199.89869 * 16 15 5 35 35 H 1.08483 * 110.73679 * 318.81688 * 16 15 5 36 36 H 1.08066 * 119.34121 * 359.92890 * 18 17 16 37 37 H 1.07984 * 120.28771 * 179.97438 * 19 18 17 38 38 H 1.08071 * 120.34266 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5247 0.0000 0.0000 3 1 1.8661 1.0502 0.0000 4 6 2.0788 -0.6775 1.2512 5 7 1.3835 -1.9203 1.5393 6 6 1.5038 -2.2746 2.9599 7 6 2.9489 -2.5466 3.2892 8 1 3.7027 -2.4650 2.5200 9 6 3.3090 -2.8998 4.5724 10 7 2.3911 -2.9998 5.5090 11 14 5.1003 -3.2377 4.9804 12 1 5.9280 -3.0587 3.7605 13 1 5.5558 -2.2915 6.0303 14 1 5.2412 -4.6308 5.4748 15 6 1.7257 -3.0520 0.6911 16 6 1.0551 -2.9173 -0.6771 17 6 1.8761 -1.9851 -1.5421 18 6 2.4338 -2.5273 -2.6958 19 6 3.1949 -1.7426 -3.5371 20 6 3.4018 -0.4094 -3.2307 21 17 4.3559 0.5854 -4.2858 22 6 2.8471 0.1250 -2.0852 23 6 2.0813 -0.6696 -1.2360 24 1 -0.3633 -1.0236 0.0918 25 1 -0.3633 0.5912 0.8405 26 1 -0.3633 0.4322 -0.9324 27 1 1.9699 -0.0041 2.1041 28 1 3.1403 -0.8888 1.1073 29 1 1.1408 -1.4491 3.5723 30 1 0.9107 -3.1662 3.1635 31 1 2.6443 -3.2486 6.4117 32 1 2.8073 -3.0880 0.5617 33 1 1.3903 -3.9718 1.1695 34 1 1.0231 -3.9052 -1.1546 35 1 0.0374 -2.5567 -0.5722 36 1 2.2654 -3.5697 -2.9260 37 1 3.6277 -2.1645 -4.4320 38 1 3.0033 1.1652 -1.8370 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593065837.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:27 Heat of formation + Delta-G solvation = -4.390543 kcal Electronic energy + Delta-G solvation = -19869.640700 eV Core-core repulsion = 16929.396561 eV Total energy + Delta-G solvation = -2940.244138 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.21791 -38.71924 -37.36354 -35.38520 -34.60921 -33.46233 -31.04418 -29.62218 -28.47175 -26.45232 -25.08849 -23.86409 -23.46105 -21.23801 -20.39944 -18.63889 -17.47892 -17.24848 -16.58968 -16.23885 -16.05153 -15.65102 -15.38855 -14.71099 -14.49188 -14.44474 -14.22079 -13.66504 -13.48963 -13.31838 -13.14616 -12.87916 -12.72176 -12.62795 -12.44125 -12.19166 -12.08187 -11.95469 -11.82889 -11.73117 -11.63698 -11.29371 -11.17058 -10.60384 -9.77916 -9.44050 -8.88241 -8.12901 -6.34909 0.23195 0.34664 1.16478 1.33277 1.35643 1.46244 2.35991 2.66230 3.09232 3.33488 3.63347 3.80200 3.95549 4.12523 4.21470 4.35865 4.43462 4.47934 4.53553 4.63962 4.72249 4.81112 4.86041 4.95144 5.05684 5.09220 5.19244 5.24363 5.28302 5.30190 5.35897 5.36292 5.41613 5.68356 5.74857 5.76234 5.93146 6.09399 6.30679 6.78220 6.88001 7.37350 8.86259 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.020533 B = 0.004811 C = 0.004446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.305384 B = 5818.594988 C = 6295.578995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.043 4.043 3 H 0.084 0.916 4 C 0.097 3.903 5 N -0.550 5.550 6 C 0.208 3.792 7 C -0.554 4.554 8 H 0.047 0.953 9 C 0.016 3.984 10 N -0.923 5.923 11 Si 0.951 3.049 12 H -0.273 1.273 13 H -0.278 1.278 14 H -0.276 1.276 15 C 0.089 3.911 16 C -0.074 4.074 17 C -0.075 4.075 18 C -0.108 4.108 19 C -0.118 4.118 20 C -0.047 4.047 21 Cl -0.075 7.075 22 C -0.120 4.120 23 C -0.064 4.064 24 H 0.066 0.934 25 H 0.054 0.946 26 H 0.059 0.941 27 H 0.055 0.945 28 H 0.004 0.996 29 H 0.006 0.994 30 H 0.009 0.991 31 H 0.265 0.735 32 H 0.007 0.993 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.154 0.846 37 H 0.150 0.850 38 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.039 3.943 -18.505 18.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.062 4.062 3 H 0.102 0.898 4 C -0.032 4.032 5 N -0.274 5.274 6 C 0.082 3.918 7 C -0.594 4.594 8 H 0.065 0.935 9 C -0.184 4.184 10 N -0.563 5.563 11 Si 0.777 3.223 12 H -0.198 1.198 13 H -0.203 1.203 14 H -0.202 1.202 15 C -0.039 4.039 16 C -0.111 4.111 17 C -0.075 4.075 18 C -0.126 4.126 19 C -0.137 4.137 20 C -0.074 4.074 21 Cl -0.046 7.046 22 C -0.138 4.138 23 C -0.064 4.064 24 H 0.085 0.915 25 H 0.073 0.927 26 H 0.078 0.922 27 H 0.074 0.926 28 H 0.022 0.978 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.074 0.926 32 H 0.026 0.974 33 H 0.079 0.921 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.172 0.828 37 H 0.168 0.832 38 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -1.416 4.088 -18.521 19.020 hybrid contribution 2.035 -0.215 0.936 2.250 sum 0.619 3.873 -17.585 18.018 Atomic orbital electron populations 1.21499 0.92667 1.03131 1.01014 1.20378 0.97504 0.98249 0.90056 0.89783 1.21344 0.93970 0.91374 0.96504 1.59719 1.59228 1.03595 1.04829 1.19430 0.93781 0.94669 0.83924 1.22028 0.95237 1.46973 0.95122 0.93523 1.25729 1.01224 0.95055 0.96381 1.70050 1.34700 1.48798 1.02754 0.85615 0.80565 0.78072 0.78073 1.19801 1.20317 1.20163 1.21439 0.96467 0.93200 0.92841 1.20962 0.98878 0.98611 0.92629 1.19916 0.98193 0.93659 0.95737 1.21605 0.96763 1.00958 0.93290 1.21190 0.99618 0.91628 1.01222 1.20908 0.99485 0.92875 0.94095 1.98349 1.70886 1.69900 1.65450 1.21406 0.98077 1.00894 0.93453 1.19663 0.97354 0.93473 0.95949 0.91474 0.92667 0.92224 0.92646 0.97794 0.97633 0.97324 0.92593 0.97419 0.92122 0.88860 0.88966 0.82802 0.83182 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 8.89 71.81 0.64 -2.72 16 2 C -0.04 -1.26 2.57 -11.66 -0.03 -1.29 16 3 H 0.08 2.19 7.63 -1.62 -0.01 2.17 16 4 C 0.10 3.70 4.27 86.50 0.37 4.07 16 5 N -0.55 -22.52 3.23 -908.91 -2.94 -25.46 16 6 C 0.21 10.69 4.88 85.55 0.42 11.11 16 7 C -0.55 -30.63 8.04 25.60 0.21 -30.42 16 8 H 0.05 2.61 6.62 -2.91 -0.02 2.59 16 9 C 0.02 0.88 5.46 84.66 0.46 1.34 16 10 N -0.92 -54.36 13.29 21.45 0.28 -54.08 16 11 Si 0.95 44.12 29.54 68.60 2.03 46.14 16 12 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 13 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 C 0.09 3.29 4.72 86.55 0.41 3.70 16 16 C -0.07 -2.01 5.27 30.05 0.16 -1.85 16 17 C -0.07 -2.01 5.09 -19.82 -0.10 -2.12 16 18 C -0.11 -2.42 9.57 22.42 0.21 -2.21 16 19 C -0.12 -2.56 9.84 22.23 0.22 -2.34 16 20 C -0.05 -1.13 6.31 22.25 0.14 -0.99 16 21 Cl -0.07 -1.61 28.96 -2.72 -0.08 -1.69 16 22 C -0.12 -3.07 9.35 22.47 0.21 -2.86 16 23 C -0.06 -1.80 4.68 -19.85 -0.09 -1.89 16 24 H 0.07 1.93 4.79 -2.39 -0.01 1.92 16 25 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 27 H 0.05 2.26 7.70 -2.28 -0.02 2.24 16 28 H 0.00 0.16 7.19 -2.29 -0.02 0.15 16 29 H 0.01 0.31 7.92 -2.38 -0.02 0.29 16 30 H 0.01 0.48 7.88 -2.39 -0.02 0.46 16 31 H 0.27 14.69 8.31 -92.71 -0.77 13.91 16 32 H 0.01 0.31 7.27 -2.39 -0.02 0.29 16 33 H 0.06 2.35 7.65 -2.40 -0.02 2.33 16 34 H 0.09 2.03 7.66 -1.97 -0.02 2.02 16 35 H 0.09 2.47 5.90 -2.66 -0.02 2.45 16 36 H 0.15 2.60 7.72 -2.88 -0.02 2.58 16 37 H 0.15 2.52 8.06 -2.92 -0.02 2.50 16 38 H 0.14 3.16 7.67 -2.87 -0.02 3.14 16 Total: -1.00 -60.69 311.54 3.58 -57.11 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: 1.06 Total: 6.43 kcal Atomic # 6 Polarization: -31.67 SS G_CDS: 3.22 Total: -28.45 kcal Atomic # 7 Polarization: -76.89 SS G_CDS: -2.65 Total: -79.54 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 17 Polarization: -1.61 SS G_CDS: -0.08 Total: -1.69 kcal Total: -60.69 3.58 -57.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593065837.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.721 kcal (2) G-P(sol) polarization free energy of solvation -60.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds